Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000041.320.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000041.320.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000041.320.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CYZI010000041.320.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 60 75 206 144 129 0.09 0 0 - 0 99 - - +1 79 148 282 201 132 -0.21 0 0 - - 99 - - +3 519 612 752 231 138 -6.37 0 0 - 0 99 - - -3 914 914 786 126 126 -6.04 0 0 - - 99 - 0 +1 298 307 921 621 612 5.27 0 0 - - 99 - - +3 900 918 1061 159 141 -2.79 0 - - 0 99 - - 0001 +2 968 983 1144 174 159 3.18 99 - 99 - - - - +1 1117 1150 1329 210 177 2.96 0 0 - 0 99 - - +3 1062 1308 1445 381 135 -4.10 0 - - 0 99 - 0 -3 1520 1415 1281 237 132 -7.92 0 - - 0 99 - 0 +1 1354 1432 1593 237 159 2.79 0 0 - - 99 - - 0002 -1 1677 1665 1141 534 522 9.13 99 - - - 99 - - +1 2176 2188 2319 141 129 -9.82 0 0 0 92 - 7 - -2 2443 2341 2126 315 213 0.53 0 - - 99 - 0 - +2 2501 2507 2629 126 120 -10.50 0 - 0 89 - - 10 -3 2717 2702 2271 444 429 1.68 0 - - 99 - - 0 -2 2869 2710 2576 291 132 -1.28 0 - - 99 - 0 0 -3 2903 2888 2718 183 168 1.64 0 - - 99 - - 0 -2 3082 3082 2921 159 159 -7.85 0 - - 99 - 0 - 0003 +3 1737 1770 3086 1347 1314 7.04 99 - - 99 - - - 0004 -1 3324 3252 3001 321 249 0.15 99 - - - 99 - - 0005 +1 3061 3088 3492 429 402 13.13 99 99 - - - - - -2 3553 3442 3308 243 132 -9.89 0 99 - - - 0 - 0006 +2 3485 3485 3622 135 135 6.27 99 - 99 - - - - -2 3718 3718 3593 123 123 -10.26 0 - - 99 - 0 - -2 3913 3904 3773 138 129 -1.84 0 - - 99 - 0 - 0007 +3 3597 3609 4067 468 456 8.82 99 - - 99 - - - 0008 -3 4097 4097 3975 120 120 1.97 99 - - - - - 99 +2 4091 4121 4252 159 129 -5.00 0 - 0 99 - - - 0009 +3 4068 4074 4388 318 312 4.56 99 - - 99 - - - 0010 -2 4435 4408 4175 258 231 3.75 99 - - - - 99 - 0011 +2 4475 4481 4663 186 180 -1.43 99 - 99 - - - - +1 4717 4738 4911 192 171 -2.06 0 0 - - 99 - - -3 4997 4994 4866 129 126 3.67 3 - - - 96 - 3 0012 +1 4912 4924 5073 159 147 2.73 36 36 - - 63 - - 0013 -1 5073 5031 4588 483 441 7.85 99 - - - 99 - - -2 5269 5221 5099 168 120 5.26 1 - 98 - - 1 - 0014 +2 4988 5045 5785 795 738 12.38 99 - 99 - - - - -2 5845 5746 5603 240 141 0.79 0 - 99 - - 0 - 0015 +1 5683 5728 6036 351 306 6.73 99 99 - - - - - 0016 +3 6183 6189 6359 174 168 -1.31 99 - - 99 - - - -1 6669 6552 6388 279 162 -2.62 0 99 - - 0 - - 0017 +1 6304 6310 6714 408 402 4.95 99 99 - - - - - -1 6945 6945 6787 156 156 -1.75 0 - - 99 0 - - 0018 +3 6666 6702 7052 384 348 2.62 99 - - 99 - - - -2 7327 7294 7163 162 129 2.32 0 - 99 - - 0 - +3 7236 7506 7664 426 156 -10.73 0 - 94 0 - 5 - -2 7681 7456 7328 351 126 -2.79 0 - 99 0 - 0 0 -2 7975 7957 7811 162 144 -1.06 0 - 99 - - 0 0 0019 +2 7073 7124 7981 906 855 5.02 99 - 99 - - - - +2 8015 8027 8152 135 123 -7.30 0 - 0 99 - - - -2 8371 8371 8201 168 168 -4.91 0 - - 99 - 0 0 -3 8471 8264 8058 411 204 3.56 0 - - 99 - - 0 -1 8547 8547 8410 135 135 -9.87 0 - - 99 0 - - 0020 -3 8648 8621 8487 159 132 3.25 89 - - 10 - - 89 0021 +3 7860 7962 8687 825 723 4.47 99 - - 99 - - - +1 8875 8998 9198 321 198 4.17 0 0 0 - 99 - - +2 9002 9032 9235 231 201 3.20 0 - 0 - 99 - - 0022 -1 9339 9249 8851 486 396 12.69 99 - - - 99 - - -2 9442 9433 9302 138 129 -4.20 0 - - 0 - 0 99 0023 +3 9267 9276 9452 183 174 3.68 99 - - 99 - - - +3 9534 9570 9758 222 186 -2.92 0 - - 0 - - 99 +2 9710 9731 9853 141 120 -7.93 0 0 0 - - - 99 +1 9655 9658 9864 207 204 -2.92 0 0 - - - - 99 0024 -3 10004 9965 9279 723 684 10.68 99 - - - - - 99 +2 10052 10064 10192 138 126 -1.87 0 0 0 - 99 - - +1 9982 10048 10479 495 429 1.25 0 0 - - 99 - - +2 10469 10472 10594 123 120 1.53 0 - 0 - 99 - - +3 10860 10902 11033 171 129 -4.55 0 - - 0 99 0 - -2 11062 10987 10850 210 135 -1.74 0 - - - 99 0 - 0025 -1 11148 11094 9988 1158 1104 7.87 99 - - - 99 - - +3 11178 11193 11324 144 129 1.89 0 - 0 0 - 99 - 0026 +2 11162 11165 11434 270 267 -0.39 99 - 99 - - - - -1 11478 11463 11296 180 165 -10.01 0 - - - 0 99 - +2 11435 11612 11749 312 135 2.60 0 - 0 0 - 99 - +3 11529 11667 11843 312 174 1.99 0 - - 0 - 99 - 0027 -2 12160 12148 11174 984 972 11.44 99 - - - - 99 - 0028 +2 11855 11870 12172 315 300 1.18 99 - 99 - - - - +2 12173 12182 12340 165 156 -3.93 0 - 0 - 99 - - +2 12494 12497 12652 156 153 -6.72 0 0 0 0 99 - - +1 12352 12541 12711 357 168 -3.24 0 0 - 0 99 - - +2 12671 12689 12820 147 129 -8.98 0 - 0 - 99 - - +1 12739 12835 13104 363 267 -1.92 0 0 - - 99 - - 0029 -1 13230 13224 12145 1083 1077 10.50 99 - - - 99 - - +2 13043 13049 13234 189 183 -1.23 0 - 0 - 99 - - +3 13065 13182 13343 276 159 -12.71 0 99 - 0 - - - 0030 +1 13105 13228 13467 360 237 -1.44 99 99 - - - - - +2 13364 13406 13564 198 156 -0.99 0 - 0 - 99 - - +3 13659 13671 13802 141 129 -9.92 0 0 - 0 99 - - 0031 -1 13899 13878 13237 660 639 10.76 99 - - - 99 - - 0032 +2 13775 13823 14005 228 180 4.06 99 - 99 - - - - 0033 -2 14164 14128 13997 165 129 -5.30 46 - - - 53 46 - -3 14300 14279 14088 210 189 0.70 0 - - 99 - - 0 +1 14233 14332 14487 252 153 -5.69 0 0 - 99 0 - - -2 14599 14551 14408 189 141 -2.59 0 - - 71 - 0 28 +2 14540 14591 14713 171 120 -4.70 0 - 0 99 0 - - -2 14869 14854 14717 150 135 -0.44 0 - - 99 - 0 0 -3 15008 14864 14661 345 201 1.47 0 - - 99 - - 0 -2 15079 15073 14870 207 201 0.65 0 - - 99 - 0 - -2 15292 15244 15101 189 141 4.52 0 - - 99 - 0 0 0034 +3 14016 14028 15374 1356 1344 7.66 99 - - 99 - - - 0035 -3 15470 15398 15009 459 387 -0.47 99 - - - - - 99 0036 +2 15359 15368 15544 183 174 -0.48 99 - 99 - - - - +1 15478 15541 15693 213 150 -2.82 0 0 - - - - 99 0037 -3 15737 15719 15474 261 243 4.98 99 - - - - - 99 0038 +2 15848 15848 15982 132 132 6.71 99 - 99 - - - - +2 15992 15992 16168 174 174 3.79 0 0 0 - 99 - - +1 15967 16039 16212 243 171 0.08 0 0 - - 99 - - +2 16169 16172 16294 123 120 6.90 0 - 0 - 99 - - +1 16573 16597 16746 171 147 -2.23 0 0 - - 99 - - +3 16686 16704 16856 168 150 -6.09 0 - - 0 99 - - +1 16750 16753 16878 126 123 2.07 0 0 0 - 99 - - +2 16715 16811 16933 216 120 1.15 0 - 0 - 99 0 - -3 17057 17033 16875 180 156 -5.77 0 0 - - 99 - 0 +1 16879 16951 17124 243 171 -0.30 0 0 - - 99 - - +2 17024 17039 17224 198 183 2.01 0 - 0 - 99 - - +2 17246 17252 17437 189 183 0.32 0 0 0 - 99 - - +1 17176 17239 17469 291 228 4.81 0 0 - - 99 - - +2 17438 17522 17722 282 198 4.08 0 - 0 - 99 - - +1 17812 17827 17952 138 123 1.60 0 0 0 - 99 - - +2 17822 17822 17965 141 141 -1.03 0 - 0 - 99 - - -3 17981 17969 17835 144 132 -5.73 0 - - - 99 - 0 +2 18077 18155 18301 222 144 1.47 0 - 0 - 99 - - -2 18499 18457 18317 180 138 -4.93 0 - - - 99 0 - -2 18865 18856 18692 171 162 -8.41 0 - - - 99 0 0 +1 18724 18736 18888 162 150 2.31 0 0 - - 99 - 0 -3 18902 18902 18579 321 321 0.08 0 - - - 99 - 0 -2 19150 19141 19016 132 123 -3.75 0 - - - 99 0 - +2 19055 19067 19207 150 138 -1.08 0 - 0 - 99 - - +2 19487 19487 19615 126 126 1.80 0 - 0 - 99 - - -3 19742 19682 19557 183 123 -6.47 0 0 - - 99 - 0 0039 -1 19920 19917 15985 3933 3930 10.95 99 - - - 99 - - +1 20680 20761 20919 237 156 0.80 0 0 - - 99 - - 0040 -1 21141 21123 20053 1086 1068 10.55 99 - - - 99 - -