Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000021.304.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000021.304.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/NZ_CYZI010000021.304.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_vulgatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CYZI010000021.304.AOI_01 Sequence length = 20165 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 481 481 359 120 120 2.54 0 99 - - - 0 - +2 791 812 940 147 126 7.30 0 99 0 - - - - +2 1139 1166 1330 189 162 10.72 0 99 0 - - - - 0001 +1 1 7 1635 1632 1626 16.73 99 99 - - - - - 0002 -2 1783 1771 1640 141 129 6.15 99 - - - - 99 - 0003 +2 1691 1703 1876 183 171 6.20 99 - 99 - - - - -3 2243 2240 2100 141 138 4.72 0 99 - - - - 0 -3 2936 2771 2409 525 360 7.35 0 99 - - - - 0 -1 3204 3186 3061 141 123 4.79 0 99 - - 0 - - -3 3461 3440 3303 156 135 9.84 0 99 - - - - 0 -2 3934 3934 3800 132 132 3.18 0 99 - - - 0 - 0004 +1 1978 1984 4173 2193 2187 13.42 99 99 - - - - - 0005 +3 4164 4176 4631 465 453 16.33 99 - - 99 - - - 0006 -2 4750 4711 4409 339 300 8.63 99 - - - - 99 - -1 5397 5358 5230 165 126 4.37 0 - 99 - 0 - - +3 5892 5901 6023 129 120 5.10 8 - 91 8 - - - 0007 +2 4628 4649 6097 1467 1446 15.08 99 - 99 - - - - 0008 -1 6297 6189 5980 315 207 13.89 99 - - - 99 - - -2 6526 6442 6263 261 177 3.40 0 - 99 - - 0 - -2 6880 6865 6686 192 177 0.95 0 - 99 - - 0 0 -2 7060 7003 6881 177 120 3.07 0 - 99 - - 0 - -2 7351 7282 7151 198 129 1.29 0 - 99 - - 0 - +3 7212 7227 7400 186 171 -0.94 0 - 99 0 - - - -3 7409 7379 7251 156 126 -0.89 1 - 96 2 - - 1 0009 +2 6140 6146 8434 2292 2286 9.67 99 - 99 - - - - 0010 +2 8510 8519 9130 618 609 16.43 99 - 99 - - - - -3 9659 9659 9513 144 144 10.08 0 99 - - - - 0 0011 +1 9265 9301 9966 699 663 15.96 99 99 - - - - - 0012 +3 9993 9999 10172 177 171 -0.35 98 - - 98 1 - - -3 10223 10202 10056 165 144 -4.75 4 - - - 95 - 4 0013 -2 10372 10339 10217 153 120 16.40 45 - - 54 - 45 - 0014 +3 10221 10275 10796 573 519 18.27 99 - - 99 - - - -1 11007 10992 10813 192 177 6.32 0 - 99 - 0 - - -3 11969 11930 11790 177 138 11.91 0 - 99 - - - 0 -2 12496 12484 12344 150 138 4.91 0 - 99 - - 0 - -1 12672 12660 12406 264 252 8.98 0 - 99 - 0 - - -2 12724 12712 12575 147 135 5.47 0 - 99 - - 0 - -3 12791 12743 12609 180 132 2.53 0 - 99 - - - 0 0015 +2 10790 10796 12919 2127 2121 15.01 99 - 99 - - - - 0016 -3 13790 13784 13182 606 600 16.83 99 - - - - - 99 -1 14109 14094 13864 243 228 7.35 0 - 99 - 0 - - 0017 +2 13829 13913 15214 1383 1299 12.63 99 - 99 - - - - -1 15219 15192 15025 192 165 11.32 0 - 99 - 0 - - 0018 +2 15215 15227 15364 147 135 15.85 99 - 99 - - - - 0019 -3 15437 15428 15279 156 147 13.91 99 - - - - - 99 0020 +2 15515 15533 15685 168 150 5.65 99 - 99 - - - - 0021 -2 16210 16192 15575 633 615 15.48 99 - - - - 99 - 0022 +3 16206 16254 16430 222 174 -1.51 84 - - 84 15 - - -1 16437 16413 16246 189 165 -0.67 10 - - 89 10 - - 0023 +1 16339 16369 16509 168 138 8.35 99 99 - - - - - 0024 +1 16576 16639 16785 207 144 3.67 99 99 - - - - - +3 16728 16743 16868 138 123 1.58 4 - - 4 - - 95 -1 16905 16899 16774 129 123 -3.76 3 - - - 3 - 96 +1 17092 17122 17250 156 126 -3.53 0 0 - - - - 99 +1 17251 17251 17430 177 177 -3.62 0 0 - - 0 - 99 -2 17491 17443 17312 177 129 -5.24 0 - - - 0 0 99 0025 -3 17663 17657 16650 1011 1005 5.20 99 - - - - - 99 0026 +3 17508 17595 17759 249 162 2.96 24 - - 24 - 75 - 0027 -2 17830 17701 17504 324 195 3.93 74 - - 25 - 74 - 0028 -3 17906 17867 17679 225 186 0.44 99 - - - - - 99 -2 18115 18115 17978 135 135 -12.01 0 - - 7 0 0 92 0029 -1 18213 18174 17929 282 243 -7.82 99 - - - 99 - - -2 18373 18280 18116 255 162 -17.34 0 - - 0 - 0 99 -1 18420 18411 18277 141 132 -13.33 0 - - 0 0 - 99 +3 17982 18306 18587 603 279 -8.78 0 - - 0 - - 99 0030 -3 18638 18119 17967 669 150 0.96 99 - - - 0 - 99 0031 +1 18385 18424 18648 261 222 -1.98 99 99 - - - - - 0032 -2 18808 18796 18602 204 192 1.27 99 - - - - 99 - 0033 -3 19013 18980 18846 165 132 1.91 99 - - - - - 99 +1 18964 19042 19200 234 156 -7.52 0 0 - 99 - - 0 -1 19293 19290 19156 135 132 -14.18 0 - 0 99 0 0 0 -2 19324 19264 19121 201 141 -12.31 0 - - 99 - 0 0 -3 19358 19139 19014 342 123 -6.12 0 0 - 99 - - 0 -2 19555 19447 19325 228 120 -10.96 0 - - 99 - 0 - 0034 +3 18867 18885 19640 771 753 2.17 99 - - 99 - - - 0035 +2 19583 19589 19882 297 291 2.18 99 - 99 - - - 0 0036 -3 19913 19757 19359 552 396 -6.77 99 - - - - - 99 -2 19948 19843 19637 309 204 -7.38 0 - 99 - - 0 0 -2 20164 20083 19949 213 132 -10.29 0 - 99 - - 0 -