Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_uniformis.result/NZ_DS3622341.2.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_uniformis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_uniformis.result/NZ_DS3622341.2.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_uniformis.result/NZ_DS3622341.2.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_uniformis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_DS3622341.2.AOI_01 Sequence length = 17103 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 2 44 244 240 198 5.45 99 - 99 - - - - 0002 +3 66 138 263 195 123 -5.76 99 - - 99 - - - -1 405 369 241 162 126 -10.48 0 - - - 0 - 99 +1 490 490 639 147 147 -8.44 0 0 - 99 - - - -3 698 629 507 189 120 -4.27 0 0 - 99 - - 0 -2 1039 1039 917 120 120 -1.17 0 - - 99 - 0 0 -3 1280 1277 699 579 576 0.23 0 - - 99 - - 0 -1 1431 1299 1153 276 144 -16.47 0 - - 99 0 - - -2 1639 1549 1415 222 132 -8.42 0 - - 99 - 0 0 -3 1715 1574 1281 432 291 0.81 0 - - 99 - - 0 +1 1813 1831 1971 156 138 -6.66 0 0 - 99 - - - +2 2402 2411 2551 147 138 -11.93 0 - 0 99 - - 0 -3 2627 2162 1959 666 201 0.51 0 - - 99 - - 0 -1 2763 2754 2590 171 162 -11.27 0 - - 99 0 - - 0003 +3 267 297 2936 2667 2637 12.95 99 - - 99 - - - -3 2975 2927 2796 177 129 5.45 0 - - 99 - - 0 -3 3248 3218 3003 243 213 -17.15 0 - 99 - - 0 0 -2 3259 3118 2990 267 126 3.68 0 - 99 - - 0 - +3 3054 3198 3329 273 129 -4.40 0 - 99 0 0 - - -1 3339 3339 3187 150 150 -7.30 0 - 99 - 0 - - -3 3425 3380 3249 174 129 -11.29 0 - 99 - - - 0 0004 +2 2966 2993 3493 525 498 8.53 99 - 99 - - - - 0005 +3 3405 3408 3536 129 126 -5.77 99 - - 99 - - - -2 3964 3955 3770 192 183 -10.64 0 99 0 - 0 0 - +2 3719 3866 4072 351 204 -5.66 0 99 0 - 0 - - 0006 +1 3610 3727 4128 516 399 7.61 99 99 - - 0 - - -1 4137 4113 3640 495 471 1.32 0 99 - - 0 - - 0007 -1 4344 4308 4174 168 132 0.05 99 - - - 99 - - +3 4314 4341 4514 198 171 -13.14 0 - 99 0 - 0 - -1 4647 4590 4453 192 135 -8.17 0 - 99 - 0 0 - -2 4708 4510 4250 456 258 1.31 0 - 99 - - 0 - -1 4896 4887 4759 135 126 0.07 0 0 99 - 0 0 - -2 5071 4945 4709 360 234 4.09 0 - 99 - - 0 - 0008 +2 4226 4238 5077 849 837 9.35 99 - 99 - - - - -1 5334 5298 5143 189 153 -5.46 0 - 99 - 0 - - 0009 +2 5141 5153 5392 249 237 7.29 99 - 99 - - - - 0010 -2 5641 5398 5198 441 198 4.42 99 - - - - 99 - -3 5876 5567 5430 444 135 3.33 0 - - 99 - 0 0 -2 5905 5893 5723 180 168 -1.31 0 - - 99 - 0 - -2 6133 6100 5978 153 120 -0.34 0 - - 99 - 0 0 -2 6436 6358 6230 204 126 -6.21 0 - - 99 - 0 - -3 6446 6416 6276 168 138 -2.04 0 - - 99 - 0 0 0011 +3 5358 5361 6461 1101 1098 12.23 99 - - 99 - - - 0012 -1 6510 6492 6334 174 156 -13.53 99 - - - 99 - - -2 6874 6643 6506 366 135 -6.73 0 - - 99 - 0 - -3 7076 7034 6912 162 120 -0.25 0 - - 99 - - 0 -2 7093 7090 6968 123 120 -1.91 0 - 0 99 - 0 - +2 6926 7190 7321 393 129 -13.45 0 - 0 99 - - 0 -2 7384 7357 7211 171 144 -6.60 0 - - 99 - 0 - -3 7691 7652 7350 339 300 0.79 0 - - 99 - - 0 0013 +3 6462 6495 7775 1311 1278 10.48 99 - - 99 - - - +2 7544 7607 7786 240 177 -11.71 0 0 0 - - 99 - +1 7492 7672 7797 303 123 -11.43 0 0 - - - 99 - -2 8095 7639 7466 627 171 0.71 0 - - 99 - 0 0 0014 -1 8124 8031 7726 396 303 -3.02 90 - - - 90 9 - -1 8406 8322 8182 222 138 0.94 0 - 99 - 0 0 - -3 8420 8357 8211 207 144 -15.21 0 - 99 - 0 0 0 -2 8731 8218 8096 633 120 3.82 0 - 99 - - 0 - 0015 +2 7787 7820 8773 984 951 12.79 99 - 99 - - - - -1 9189 9165 8995 192 168 -5.96 0 - 0 0 0 99 - +2 8855 9131 9349 492 216 -1.29 0 - 0 91 - 8 - 0016 -2 9487 9334 8915 570 417 4.97 99 - 0 - - 99 - 0017 +3 8976 9054 9950 972 894 4.99 99 - - 99 - - - 0018 -3 9995 9896 9315 678 579 5.04 12 - - 87 - - 12 0019 +2 9761 9794 10012 249 216 -10.92 99 - 99 - - - - +1 9913 10099 10278 363 177 1.32 0 0 - - 99 - - +2 10223 10223 10345 120 120 -1.93 0 - 0 0 99 - - +1 10279 10327 10500 219 171 1.21 0 0 - 0 99 - - +3 10119 10275 10511 390 234 -15.04 0 - - 0 99 - - +2 10466 10508 10636 168 126 0.00 0 0 0 - 99 - - -2 10981 10939 10733 246 204 -12.82 0 0 - - 99 0 - +1 10501 10894 11154 651 258 2.53 0 0 - - 99 - - 0020 -1 11157 11145 9988 1167 1155 11.18 99 - - - 99 - - +2 11162 11171 11314 150 141 1.99 0 0 0 - 99 0 - +2 11519 11627 11833 312 204 0.70 0 0 0 - 99 - - -3 11918 11909 11766 150 141 -6.99 0 0 - - 99 - 0 0021 +1 11158 11464 12030 870 564 0.06 0 0 - - 99 - - 0022 -1 12150 12138 11158 990 978 11.60 99 - - - 99 - - +1 12163 12211 12360 195 147 -4.77 0 0 - 1 - - 98 +1 12484 12487 12615 129 126 -12.38 0 0 0 28 - - 71 +1 12616 12631 12753 135 120 -8.18 0 0 - 0 - - 99 +1 12973 12988 13128 153 138 -3.32 0 0 0 0 - - 99 0023 -3 13235 13208 12135 1098 1071 7.99 99 - - - - - 99 0024 +3 12144 12348 13421 1275 1071 0.39 99 - - 99 - - - +1 13225 13252 13491 264 237 -15.74 0 0 99 - - - - 0025 +2 12947 13559 13915 966 354 0.22 0 - 0 - - 99 - 0026 +3 13677 13851 13973 294 120 -5.90 48 - - 48 - 51 - 0027 -2 14026 13906 13259 765 645 6.95 99 - 0 - - 99 - +2 13955 14093 14224 267 129 -3.26 0 0 0 - 99 - - 0028 -1 14331 14304 14077 252 225 1.82 99 0 - - 99 - - 0029 +1 14005 14248 14400 393 150 -6.79 99 99 - - - - - -2 14572 14500 14351 219 147 -6.92 0 - - 99 - 0 - -3 14771 14702 14418 351 282 1.28 0 - - 99 - - 0 0030 +3 14292 14370 14999 705 627 8.89 99 - - 99 - - - 0031 -3 15029 15020 14772 255 246 -3.18 99 - 0 - - - 99 -3 15296 15230 15084 210 144 -11.49 0 99 - - - - 0 -1 15303 15222 15097 204 123 -1.43 0 99 - - 0 - 0 +2 15245 15245 15394 147 147 -9.63 0 99 0 - - - - -1 15504 15501 15304 198 195 3.33 0 99 - - 0 0 - -2 15508 15508 15284 222 222 -15.08 0 99 - - - 0 - +2 15545 15623 15850 303 225 -6.25 0 99 0 0 0 - 0 -3 15947 15758 15600 345 156 -2.76 0 99 0 - 0 - 0 +3 15612 15723 15992 378 267 -6.90 0 99 - 0 0 - - 0032 +1 14992 15145 16134 1140 987 11.80 99 99 - - - - - -1 16140 15861 15505 633 354 -0.53 0 99 - - 0 - - +2 15851 15950 16144 291 192 -11.61 0 - 0 - 99 - - -1 16503 16323 16141 360 180 -2.89 0 - 99 - 0 - - +1 16165 16363 16728 561 363 -12.17 0 0 99 - - 0 - -1 16821 16647 16504 315 141 -5.53 0 0 99 - 0 0 - -2 16846 16519 16262 582 255 1.98 0 0 99 - - 0 - 0033 +2 16145 16166 16852 705 684 14.84 99 - 99 - - - -