{
"AOIs": [ 
{
"name": "NZ_CDQO010009531.439.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Bacteriodaceae/Bacteroides_thetaiotaomicron/GCF_000011065.1_ASM1106v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "orf00001",
"orfname": "orf00001",
"gene_start": 73,
"gene_end": 627,
"gene_strand": "+",
"real_start": 74,
"real_end": 628 ,
"real_strand": "+",
"name": "orf00001",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     7.07356507679871,
"motifs":    "",
"function":  "Uncharacterized RNA pseudouridine synthase Cpar_0723 OS=Chlorobaculum parvum (strain NCIB 8327) OX=517417 GN=Cpar_0723 PE=3 SV=1",
"annotation":"Species='-'<br>match=44.444%|Evalue=4.29e-46<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|O50310|Y723_CHLP8>sp|O50310|Y723_CHLP8</a>",
"protein":"VIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQDEGTIVGSIARNPKDRMQMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHMKHIGHVLFNDERYGGHEILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPVTGEEMYFTSELPDDMTQLIEKWRGYISNREIE",
"dna":"GTGATTGCCAAGACGCCGGATGCCAAGACCAACCTCGGAATACAATTCTTTAATAAGACGACCAAACGCAGATACCGTGCCCTTGTCTGGGGAAATGTGGAACAGGATGAAGGCACGATTGTAGGCAGTATCGCCCGTAATCCGAAAGACCGGATGCAGATGGCGGTTATGTCCGACCCGTCGATGGGCAAGCACGCGGTCACTCATTATCGGGTGCTTGAACGGCTGGGATATGTCACGCTGGTAGAGTGCATACTCGAAACCGGACGTACTCATCAGATTCGTGTCCACATGAAACATATCGGGCATGTACTTTTCAATGACGAACGCTATGGCGGTCACGAAATTCTGAAAGGTACTCACTTTAGTAAATACAAACAATTTGTAAATAATTGCTTTGACACTTGTCCCCGGCAGGCTCTGCATGCCATGACATTGGGGTTCGTACATCCCGTCACAGGCGAAGAGATGTACTTTACTTCCGAACTTCCGGATGACATGACCCAGCTTATCGAGAAGTGGCGAGGCTATATAAGTAACAGAGAAATAGAA",
"points": [{"x":1.47534357316087,"y":0},{"x":1.47534357316087,"y":2},{"x":12.2717865804365,"y":2},{"x":12.6717865804365,"y":1},{"x":12.2717865804365,"y":0}]}
,{
"name": "orf00003",
"orfname": "orf00003",
"gene_start": 624,
"gene_end": 1598,
"gene_strand": "+",
"real_start": 625,
"real_end": 1599 ,
"real_strand": "+",
"name": "orf00003",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     22.4535165723525,
"motifs":    "",
"function":  "D-alanine--D-alanine ligase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) OX=226186 GN=ddl PE=3 SV=1",
"annotation":"Species='-'<br>match=100.000%|Evalue=0.0<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q8A1F3|DDL_BACTN>sp|Q8A1F3|DDL_BACTN</a>",
"protein":"MKRTIAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMQGTRWEVQLPDGAKAPVDRNDFSFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTCNQYLKAFGVRIAESLLLRQGQSVSDEDVMEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVKAFEEAQEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEVVTHNEFFDYDAKYNGQVDEITPARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTAGEKINLLEVNTTPGMTTTSFIPQQVRAAGLDIKDVMTDIIENKF",
"dna":"ATGAAACGCACAATTGCTATCGTAGCCGGAGGTGACACCTCCGAATTTCATGTATCCCTGCGTAGTGCACAGGGAATATATTCCTTCATAGATAAGGAAAAGTACACACTGTACATTGTCGAGATGCAGGGGACCCGTTGGGAAGTACAATTGCCGGATGGTGCAAAAGCACCGGTAGACCGCAATGATTTCAGCTTTATGCTGGGAACGGAAAAGATCAGGTTTGACTTTGCCTATATTACCATTCACGGTACTCCGGGCGAAGACGGCCGTCTTCAGGGATACTTTGACATGATGCACATACCATACTCTTGTTGCGGGGTGCTGGCTGCGGCGATCACCTATGACAAGTTTACCTGCAACCAATACCTGAAAGCCTTCGGAGTGCGTATTGCAGAATCGTTGCTATTGCGTCAGGGACAATCGGTTTCCGACGAAGATGTTATGGAAAAGATCGGTTTGCCTTGTTTCATCAAGCCGAGTCTGGGCGGTTCGAGCTTCGGCGTAACAAAGGTTAAGACGAAAGAACAAATACAGCCGGCCATTGTTAAGGCCTTTGAAGAAGCCCAGGAAGTGCTCGTAGAAGCATTTATGGAAGGAACGGAGCTGACCTGCGGCTGCTATAAAACCAAAGACAAGACCGTCATCTTCCCGCCTACGGAAGTGGTGACACATAATGAGTTCTTTGATTATGATGCAAAATACAATGGTCAGGTAGACGAGATAACTCCTGCACGCATCTCGGACGAACTGACGAATCGCGTGCAAATGCTGACCTCGGCCATTTATGATATATTGGGCTGTTCCGGTATCATCCGTGTGGATTATATTGTGACTGCCGGCGAAAAGATCAATCTGCTGGAAGTGAATACGACTCCGGGGATGACCACTACAAGCTTTATTCCCCAGCAAGTGCGTGCTGCCGGTCTGGATATAAAGGATGTGATGACTGATATAATAGAAAATAAATTT",
"points": [{"x":12.6111560226354,"y":0},{"x":12.6111560226354,"y":2},{"x":31.8958771220695,"y":2},{"x":32.2958771220695,"y":1},{"x":31.8958771220695,"y":0}]}
,{
"name": "sORF_1",
"orfname": "sORF_1",
"gene_start": 1661,
"gene_end": 1753,
"gene_strand": "+",
"real_start": 1662,
"real_end": 1754 ,
"real_strand": "+",
"name": "sORF_1",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     34.498787388844,
"motifs":    "RBS=ATTAAATATTAAATTTGT<br>",
"function":  "",
"annotation":"",
"protein":"VGIAPPITYYLSLITYYLPLNFIAYGYYRVx",
"dna":"GTGGGCATAGCGCCGCCTATTACCTATTACTTATCACTTATTACCTATTACCTGCCTCTAAACTTCATAGCTTATGGATACTACAGAGTTTGA",
"points": [{"x":33.5691188358933,"y":0},{"x":33.5691188358933,"y":2},{"x":35.0284559417947,"y":2},{"x":35.4284559417947,"y":1},{"x":35.0284559417947,"y":0}]}
,{
"name": "105.3;Nigrescin",
"orfname": "orf00005",
"gene_start": 1734,
"gene_end": 2882,
"gene_strand": "+",
"real_start": 1735,
"real_end": 2883 ,
"real_strand": "+",
"name": "105.3;Nigrescin",
"color":     "#70c947",
"yline":     10,
"angle":     -60,
"xtext":     46.645109135004,
"motifs":    "",
"function":  "105.3;Nigrescin",
"annotation":"Evalue=8.38e-145 match=50.000%;",
"protein":"MDTTEFDEIRPYNDEELPQIFEELIADPAFQKAATDAIPNVPFELLAQKIRACKSKLDFQETFCYGILWKIAADHTDGLTLDHTAVPDKSKAYTYLSNHRDIILDSGFLSILLIDQGMDTVEIAIGDNLLVYPWIKKLVRVNKSFIVQRALTMRQMLESSARMSRYMHYTISEKKQSIWIAQREGRAKDSNDRTQDSVLKMLAMGGEGDLIDRLMEMNIAPLAISYEYDPCDFLKAQEFQLKRDIEGYKKTTQDDLISMQTGLFGYKGKVHFQTAPCINDRLAQLDRSLPKQELFSSISACIDQRIHSNYRIYSGNYVAYDLLKGTSEFAGHYTPEEKLRFVTYIEQQLGKIKIPNKDEDFLRGKLLLMYANPLVNYLAACQ",
"dna":"ATGGATACTACAGAGTTTGATGAGATTCGTCCTTACAATGATGAGGAACTTCCTCAAATCTTTGAGGAGCTGATTGCTGATCCTGCTTTTCAGAAGGCGGCTACTGATGCGATACCGAACGTCCCCTTTGAACTTTTGGCGCAGAAAATACGCGCTTGTAAGAGCAAGCTGGATTTTCAGGAAACATTCTGTTATGGTATTTTATGGAAAATAGCGGCGGACCATACGGATGGGCTGACTCTGGATCATACGGCTGTGCCGGATAAAAGCAAGGCTTATACATATCTCTCCAATCATCGGGATATTATATTGGATTCGGGCTTCCTCTCTATTTTGCTGATTGATCAGGGAATGGATACGGTAGAGATAGCGATTGGTGACAATCTGCTGGTTTATCCGTGGATCAAGAAGCTGGTTCGTGTCAACAAATCATTTATTGTACAACGGGCGCTGACCATGCGGCAGATGCTGGAATCTTCGGCACGGATGTCCCGTTATATGCATTATACCATTAGTGAGAAGAAGCAGTCCATCTGGATTGCCCAGCGTGAAGGGCGTGCCAAAGACTCGAACGACCGTACTCAGGATAGCGTACTGAAGATGCTGGCGATGGGTGGTGAAGGCGACTTGATCGACCGTCTGATGGAGATGAATATCGCTCCTCTTGCCATTTCATACGAATATGATCCCTGTGACTTCCTGAAAGCGCAGGAGTTTCAGTTGAAAAGAGATATAGAAGGATATAAGAAAACCACTCAGGACGATTTAATCAGTATGCAGACCGGTCTTTTCGGATATAAAGGGAAGGTTCATTTTCAGACGGCTCCCTGTATCAATGACAGGTTGGCGCAGCTGGACCGTTCGTTACCGAAGCAGGAACTGTTCTCCAGCATATCTGCCTGCATCGACCAGAGGATTCATAGTAACTATCGGATCTATTCGGGTAATTACGTTGCCTATGATTTGCTGAAGGGTACATCCGAGTTTGCCGGTCATTACACCCCCGAAGAGAAACTGCGATTTGTTACCTATATCGAGCAACAACTGGGCAAAATAAAGATTCCGAATAAAGACGAAGACTTTTTGCGTGGAAAATTGTTATTAATGTATGCCAATCCGTTGGTGAACTATTTAGCTGCTTGCCAA",
"points": [{"x":35.0444624090542,"y":0},{"x":35.0444624090542,"y":2},{"x":57.8457558609539,"y":2},{"x":58.2457558609539,"y":1},{"x":57.8457558609539,"y":0}]}
,{
"name": "orf00006",
"orfname": "orf00006",
"gene_start": 2879,
"gene_end": 3592,
"gene_strand": "+",
"real_start": 2880,
"real_end": 3593 ,
"real_strand": "+",
"name": "orf00006",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     65.3900565885206,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MNKVKLHTLWLLGMLFLMTACGDDDDYYYPSVKLEFVTVKAGADGLIQSLLPDKGELLTVAKDRTGSTISPNSARRVISNYEVNPEDATAVIYSLQSVVAPEPKGADDPAFEGGLKYDPVDVTSIWLGRDYLNMILNVKININSGKQHVFGMIEESVEVEGDETVVTLSLFHDANGDEENYNRRAYISVPLTKYVDEENPHQTIRIKFKYHTTDKNGVVVESSKYCDPGFEYVPGVN",
"dna":"ATGAATAAAGTAAAGTTACATACACTCTGGCTTTTGGGTATGCTTTTCCTGATGACTGCCTGCGGGGATGATGATGATTACTATTATCCTTCTGTGAAGTTGGAATTTGTCACAGTGAAGGCTGGGGCGGATGGTCTGATACAGAGTCTGCTTCCTGACAAGGGAGAGCTGTTGACTGTTGCGAAAGACCGTACCGGATCAACCATTTCTCCGAACTCGGCCAGGCGTGTAATCAGTAACTATGAAGTAAATCCGGAGGATGCTACGGCTGTCATATACTCATTGCAGTCGGTGGTGGCACCGGAGCCAAAGGGGGCTGACGACCCGGCTTTTGAAGGCGGACTGAAGTATGATCCGGTAGACGTGACCAGCATTTGGCTGGGGCGTGACTATTTGAATATGATTCTGAACGTGAAGATCAATATCAATAGTGGCAAACAGCACGTGTTTGGTATGATAGAAGAGAGCGTCGAGGTGGAAGGGGATGAGACAGTCGTTACTTTGTCTCTGTTTCATGATGCGAATGGGGATGAGGAGAACTATAATCGTCGTGCTTACATTTCTGTTCCTCTGACGAAATATGTGGATGAAGAAAATCCTCATCAAACCATAAGGATAAAATTCAAGTATCATACCACAGATAAAAATGGTGTGGTGGTAGAATCAAGCAAATATTGTGATCCGGGATTTGAATATGTTCCGGGCGTGAAC",
"points": [{"x":58.1851253031528,"y":0},{"x":58.1851253031528,"y":2},{"x":72.1949878738884,"y":2},{"x":72.5949878738884,"y":1},{"x":72.1949878738884,"y":0}]}
,{
"name": "orf00007",
"orfname": "orf00007",
"gene_start": 3607,
"gene_end": 3999,
"gene_strand": "+",
"real_start": 3608,
"real_end": 4000 ,
"real_strand": "+",
"name": "orf00007",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     76.8593371059014,
"motifs":    "",
"function":  "Sulfurtransferase Alvin_2599 OS=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) OX=572477 GN=rhd_2599 PE=1 SV=1",
"annotation":"Species='-'<br>match=34.615%|Evalue=5.94e-10<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|D3RPB9|RHODA_ALLVD>sp|D3RPB9|RHODA_ALLVD</a>",
"protein":"MFKMNQLVVGLFLFLSSLFSCQQKGDFKTVNVEDFDSIIQDEEVQRLDVRTLAEYSEGHIAKTININVMDDSFASMADSLLQKNKPVALYCRSGKRSKKAAAILSEKGYKVVELGKGFNAWQAAGKEIEY",
"dna":"ATGTTTAAAATGAATCAATTAGTCGTGGGATTATTTTTATTTCTCTCTTCTCTTTTCTCCTGTCAGCAGAAAGGAGACTTTAAAACGGTGAATGTAGAGGATTTCGATTCTATCATTCAGGATGAAGAAGTGCAGCGTCTGGATGTTCGTACACTGGCTGAATATTCAGAAGGACATATTGCAAAAACGATCAATATAAATGTGATGGATGACTCTTTTGCCTCGATGGCGGATTCATTGTTGCAAAAGAACAAACCGGTTGCGTTGTATTGCCGTAGCGGTAAACGGAGCAAGAAAGCTGCTGCGATCCTTAGTGAAAAAGGATATAAGGTTGTGGAGCTTGGTAAAGGATTCAATGCCTGGCAGGCGGCAGGAAAGGAGATAGAATAC",
"points": [{"x":72.8981406628941,"y":0},{"x":72.8981406628941,"y":2},{"x":80.4205335489087,"y":2},{"x":80.8205335489087,"y":1},{"x":80.4205335489087,"y":0}]}
,{
"name": "orf00010",
"orfname": "orf00010",
"gene_start": 4224,
"gene_end": 4928,
"gene_strand": "-",
"real_start": 4225,
"real_end": 4929 ,
"real_strand": "-",
"name": "orf00010",
"color":     "#8fbcb9",
"yline":     10,
"angle":     -60,
"xtext":     92.4818108326597,
"motifs":    "",
"function":  "N-succinylornithine carbamoyltransferase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) OX=226186 GN=argF' PE=3 SV=1",
"annotation":"Species='-'<br>match=100.000%|Evalue=2.16e-179<br>UniRef:<a href=http://www.uniprot.org/uniprot/sp|Q8A1E9|SOTC_BACTN>sp|Q8A1E9|SOTC_BACTN</a>",
"protein":"MDGDKPEHLLEAIPVMGCYCDIIGVRSFARFEDRDFDYQETILNQFIQYSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYDFVITHPEGYELAPQFVGNAKVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSKDREWTVSDRQMAVTNNAFFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVVLKRLIEGLE",
"dna":"ATGGATGGTGACAAACCGGAACATTTGCTGGAAGCGATTCCTGTGATGGGTTGTTATTGTGACATCATCGGAGTACGTTCCTTTGCCCGTTTCGAAGATCGCGATTTTGATTATCAGGAGACTATTCTGAATCAATTTATCCAATATTCCGGACGTCCTGTCTTCTCGATGGAGGCAGCTACCCGCCACCCATTGCAGAGCTTTGCCGATTTAATCACCATTGAGGAATATAAAAAGACGGCACGTCCCAAAGTCGTAATGACTTGGGCGCCACATCCCCGTCCATTGCCACAGGCTGTTCCCAACTCCTTTGCAGAGTGGATGAATGCCACTGACTATGATTTCGTTATCACTCACCCGGAAGGATATGAGCTGGCGCCTCAATTCGTAGGAAATGCCAAGGTAGAATATGATCAGATGAAGGCTTTCGAAGGAGCAGACTTTATATACGCCAAGAACTGGGCTGCCTATACAGGCGACAATTACGGCCAGATATTAAGCAAAGACCGTGAATGGACAGTCAGCGACCGACAGATGGCAGTAACCAACAATGCTTTCTTTATGCACTGCCTGCCTGTTCGCAGAAATATGATCGTTACGGATGATGTAATCGAAAGTCCCCAGTCTATCGTTATCCCCGAAGCTGCCAACCGTGAAATCTCGGCTACGGTGGTTTTGAAGAGATTGATTGAGGGATTGGAA",
"points": [{"x":85.3678253839935,"y":1},{"x":85.7678253839935,"y":2},{"x":99.5957962813258,"y":2},{"x":99.5957962813258,"y":0},{"x":85.7678253839935,"y":0}]}
]}