Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_sartorii.result/NZ_QXWL010000421.234.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_sartorii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_sartorii.result/NZ_QXWL010000421.234.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_sartorii.result/NZ_QXWL010000421.234.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_sartorii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QXWL010000421.234.AOI_01 Sequence length = 21143 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 352 364 642 288 276 -8.25 0 0 - - - 99 - +3 582 582 743 159 159 0.64 0 - - 0 - 99 - +3 747 780 920 171 138 -4.68 0 - - 0 - 99 - -1 1023 975 850 171 123 -6.50 0 - - - 0 99 - +1 988 1177 1299 309 120 -14.48 0 0 0 - - 99 - +2 857 920 1474 615 552 0.24 0 - 0 - - 99 - 0001 -2 1588 1522 275 1311 1245 5.44 99 - - - - 99 - -2 1852 1813 1679 171 132 -11.50 0 - - 0 - 0 99 +1 1882 1906 2070 186 162 -3.59 0 0 0 0 - - 99 -1 2283 2205 2083 198 120 -10.05 0 - - 0 0 - 99 +1 2272 2275 2499 225 222 -1.52 0 0 - 0 - - 99 0002 +3 1425 1458 2525 1098 1065 -2.03 0 - - 0 - - 99 -2 2659 2632 2507 150 123 -12.68 0 - - - - 0 99 +2 2951 3002 3127 174 123 -8.16 0 - 0 0 - - 99 +3 2526 2904 3194 666 288 -2.65 0 - - 0 - - 99 +1 3151 3154 3300 147 144 -4.55 0 0 - - - - 99 +3 3195 3207 3473 276 264 -1.94 0 - - 0 - - 99 0003 -3 3494 3446 1629 1863 1815 6.42 99 - - - - - 99 0004 +2 3389 3437 3658 267 219 -5.22 99 - 99 - - - - 0005 -2 3718 3706 3530 186 174 4.05 99 - - - - 99 - -1 3984 3975 3769 213 204 -0.27 0 - 99 - 0 - - -1 4227 4197 4051 174 144 1.58 0 0 99 - 0 0 0 -3 4247 4139 4005 240 132 -13.91 0 - 99 - - 0 0 +1 4012 4123 4263 249 138 -20.09 0 0 99 - - 0 - 0006 -2 4672 4654 3824 846 828 -2.82 0 - 99 - 0 0 - +1 4585 4603 4743 156 138 -11.49 0 0 99 - - - - -2 4915 4885 4673 240 210 -5.08 0 - 99 - - 0 - -1 5142 5100 4957 183 141 -5.20 0 - 99 - 0 0 - 0007 +2 3731 3839 5164 1431 1323 5.62 99 - 99 - - - - -2 5185 5104 4946 237 156 -2.28 0 - 99 - - 0 - 0008 -3 5294 5294 5151 141 141 -0.22 99 - - - - - 99 -1 5664 5601 5449 213 150 -5.55 0 - 99 - 0 - - 0009 +2 5405 5414 5668 261 252 2.72 99 - 99 - - - - 0010 +3 5646 5679 5834 186 153 -2.75 99 - - 99 - - - +3 5853 5901 6044 189 141 3.37 0 - 0 0 - 99 0 +2 6137 6425 6562 423 135 -3.00 0 0 0 - - 99 - -1 6582 6579 6457 123 120 -5.71 0 0 - - 0 99 0 -3 6674 6647 6441 231 204 -12.44 0 - - - - 99 0 +3 6546 6609 6737 189 126 -5.42 0 - 4 0 - 95 - +3 6804 6813 6980 174 165 -2.11 0 - - 0 - 99 - +2 6845 6899 7057 210 156 -3.29 0 - 0 - - 99 - +3 6981 7014 7148 165 132 -5.09 0 - - 0 - 99 - 0011 -2 7165 7117 5771 1392 1344 9.85 99 - - - - 99 - 0012 -2 7369 7345 7166 201 177 1.37 99 - - - - 99 - -1 7485 7473 7342 141 129 -13.89 0 - - 99 0 - 0 -2 7780 7738 7580 198 156 0.44 0 - - 99 - 0 - 0013 +3 7245 7266 7907 660 639 12.11 99 - - 99 - - - 0014 -3 8000 7916 7668 330 246 -4.72 99 - - - - - 99 -1 8079 7962 7801 276 159 -22.21 0 - - - 0 - 99 -2 8158 8143 7910 246 231 -4.72 0 - - 99 - 0 - -2 8650 8647 8492 156 153 -6.04 0 - - 99 0 0 0 0015 -3 8792 8753 8001 789 750 -3.25 0 - - 99 - - 0 -2 8971 8962 8774 195 186 -7.69 0 - - 99 - 0 - 0016 +3 7914 7920 8999 1083 1077 11.13 99 - - 99 - - - -1 9615 9507 9301 312 204 4.34 0 - 99 - 0 0 - -2 9709 9274 9104 603 168 -1.06 0 - 99 - - 0 - +3 9666 9681 9848 180 165 -13.79 0 - 99 0 - - - +1 9787 9796 9948 159 150 -11.68 0 0 99 - - 0 - -1 9966 9951 9820 144 129 -2.73 0 - 99 - 0 0 - 0017 +2 8984 8996 9970 984 972 13.33 99 - 99 - - - - 0018 -2 9982 9979 9710 270 267 0.59 99 - - - - 99 - +2 10082 10157 10303 219 144 -13.70 0 - 0 99 - - - -2 10789 10633 10496 291 135 -3.61 0 - - 99 0 0 - 0019 +3 9996 9999 11156 1158 1155 11.72 99 - - 99 - - - -3 11162 11096 10533 627 561 0.29 0 - - 99 - - 0 -3 11489 11423 11280 207 141 -4.27 0 99 - - - 0 0 -2 11506 11389 11228 276 159 -11.88 0 99 - - - 0 - -1 11691 11688 11533 156 153 -1.06 0 99 - - 0 - - +2 11609 11711 11842 231 129 -3.10 0 99 0 - - - - 0020 +1 11140 11179 11865 723 684 9.72 99 99 - - - - - -2 12073 12031 11909 162 120 0.07 0 - - 99 - 0 - -3 12269 12146 11946 321 198 1.08 0 - - 99 - - 0 0021 +3 11832 11895 12293 459 396 7.78 99 - - 99 - - - 0022 -2 12592 12586 12428 162 156 -5.87 12 - - 87 - 12 - 0023 -1 12663 12606 12481 180 123 -0.53 99 - - - 99 - - 0024 +2 12569 12569 12700 129 129 -7.33 48 51 48 - - - - 0025 +1 12556 12565 12705 147 138 -8.71 99 99 - - - - - +2 12758 12848 13015 255 165 -4.39 0 0 0 - 99 - - -2 13066 13027 12893 171 132 -2.72 0 0 - - 99 0 - -3 13547 13502 13377 168 123 -14.42 0 0 - - 99 - 0 +2 13454 13508 13678 222 168 -2.64 0 0 0 - 99 - - 0026 -1 13785 13731 12793 990 936 11.82 99 - - - 99 - - 0027 +1 12823 13651 13809 984 156 -0.31 99 99 - - - - - -3 13985 13946 13770 213 174 -15.07 0 - 99 - - - 0 +3 14187 14223 14354 165 129 -1.99 0 - 0 0 - 99 - 0028 +2 13679 13781 14611 930 828 -1.60 0 - 0 - - 99 - -3 14675 14639 14490 183 147 -11.08 0 - - - - 99 0 -1 15006 14979 14836 168 141 -16.84 0 - 0 0 0 99 - 0029 -2 15043 15031 13778 1263 1251 11.58 99 - - - - 99 - 0030 +3 14682 14856 15191 507 333 -6.95 99 - - 99 - - - -2 15469 15343 15212 255 129 -13.50 0 0 0 0 99 0 - +2 15089 15314 15550 459 234 0.90 0 0 0 - 99 - - +2 15623 15644 15805 180 159 2.70 0 0 0 - 99 - - 0031 +1 14959 14989 15999 1038 1008 -3.20 0 0 - - 99 - - +2 15887 15890 16138 249 246 1.15 0 - 0 - 99 - - 0032 -1 16215 16203 15064 1149 1137 11.89 99 - - - 99 - - 0033 -2 16504 16459 16223 279 234 -1.58 99 - - - - 99 - -2 16801 16708 16535 264 171 -5.39 0 - - 99 - 0 0 -2 16999 16942 16802 195 138 -3.89 0 - - 99 - 0 0 -3 17078 16805 16389 687 414 2.99 0 - - 99 - - 0 0034 +3 16287 16305 17087 798 780 10.43 99 - - 99 - - - +3 17295 17322 17465 168 141 -5.34 0 - 99 0 - 0 - -1 17688 17550 17383 303 165 -0.19 0 0 99 - 0 0 - +1 17383 17575 17775 390 198 -14.94 0 0 99 - - 0 - -3 17816 17789 17610 204 177 -18.37 0 - 99 - - 0 0 +1 17863 17869 18027 162 156 -10.94 0 0 99 - - 0 - -1 18168 18075 17929 237 144 6.29 0 - 99 - 0 0 - 0035 -2 18343 18259 17261 1080 996 -2.25 0 - 99 - - 0 - -3 18515 18326 18018 495 306 -18.16 0 - 99 - - 0 0 +1 18319 18346 18537 216 189 -13.40 0 0 99 - - - - -1 18600 18501 18376 222 123 2.67 0 0 99 - 0 - 0 -2 18673 18604 18419 252 183 1.25 0 - 99 - 0 0 - -2 18967 18946 18674 291 270 1.44 0 - 99 0 - 0 - +3 18663 18873 18995 330 120 2.44 0 - 99 0 - - - -1 19062 19035 18901 159 132 -3.83 0 - 99 - 0 - - -3 19244 19229 19098 144 129 -13.78 0 - 99 - - - 0 -2 19366 19324 19106 258 216 -2.74 0 - 99 - - 0 - +1 19210 19228 19389 177 159 -8.26 0 0 99 - - - - -1 19425 19422 19282 141 138 -1.87 0 - 99 - 0 - - 0036 +2 17234 17291 19483 2247 2190 11.55 99 - 99 - - - - 0037 -3 19613 19610 19395 216 213 -5.90 99 - - - - - 99 +2 20099 20141 20263 162 120 -8.12 0 - 0 - - - 99 +2 20378 20405 20587 207 180 -8.84 0 - 0 0 - 0 99 +3 20301 20397 20615 312 216 -6.32 0 - - 0 - - 99 -2 20629 20545 20402 225 141 -2.91 0 - 0 0 - 0 99 +1 20986 20986 21141 153 153 -11.54 0 0 - - - - 99 0038 -3 21143 21098 19695 1446 1401 8.56 99 - - - - - 99