Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_salyersiae.result/NZ_JH7243071.1.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_salyersiae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_salyersiae.result/NZ_JH7243071.1.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_salyersiae.result/NZ_JH7243071.1.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_salyersiae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JH7243071.1.AOI_01 Sequence length = 21041 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 3 39 212 207 171 2.36 5 - - 5 - - 94 +1 589 664 831 240 165 4.96 0 0 - 0 99 - - +2 761 860 1036 273 174 4.81 0 - 0 - 99 - - 0001 -1 1218 1200 376 840 822 14.26 99 - - - 99 - - 0002 +3 1014 1023 1250 234 225 9.03 99 - - 99 - - - 0003 -1 1704 1662 1459 243 201 12.38 99 - - - 99 - - -3 2105 2102 1950 153 150 13.29 9 - 90 - - - 9 0004 +2 1568 1601 2503 933 900 14.35 99 - 99 - - - - 0005 +3 2415 2445 2687 270 240 10.80 99 - - 99 - - - -1 3021 2967 2797 222 168 4.31 0 99 - - 0 - 0 -1 3210 3204 3049 159 153 2.05 0 99 - - 0 - - +3 3132 3168 3299 165 129 3.92 0 99 - 0 - - - 0006 +1 2680 2698 3507 825 807 14.50 99 99 - - - - - -2 3964 3943 3788 174 153 -2.64 0 - 99 - - 0 - -3 4187 4181 4050 135 129 -1.24 0 - 99 - - - 0 -1 4269 4257 4135 132 120 0.38 0 - 99 - 0 - - -2 4480 4390 4139 339 249 2.00 0 - 99 - - 0 - 0007 +2 3488 3515 4624 1134 1107 11.12 99 - 99 - - - - -2 5254 5176 4916 336 258 8.49 0 - - 99 - 0 - 0008 +3 4620 4626 5837 1215 1209 11.86 99 - - 99 - - - 0009 -3 6008 5954 5787 219 165 3.15 99 - - - - - 99 +1 6034 6037 6168 132 129 0.18 0 0 99 - - - - -1 6327 6309 6181 144 126 5.35 0 - 99 - 0 - - +3 6192 6201 6347 153 144 3.19 0 - 99 0 - - - -2 6520 6514 6383 135 129 2.74 0 - 99 - - 0 - -2 6946 6946 6806 138 138 10.65 0 - 99 - - 0 - 0010 +2 5855 5861 6970 1113 1107 12.09 99 - 99 - - - - -3 7187 7178 7047 138 129 -1.97 0 - - 99 - - 0 -1 7770 7749 7498 270 249 4.29 0 - - 99 0 - - 0011 +3 6966 6981 7985 1017 1002 11.49 99 - - 99 - - - -2 8293 8227 8042 249 183 6.05 0 - 99 - - 0 - -3 8489 8477 8163 324 312 6.21 0 - 99 - - - 0 -3 8858 8855 8667 189 186 2.09 0 - 99 - - - 0 0012 +2 7982 8000 8983 999 981 15.04 99 - 99 - - - - 0013 +3 8844 8850 9011 165 159 5.68 99 - - 99 - - - 0014 -2 9325 9307 9131 192 174 11.18 99 - - - - 99 - 0015 -1 9396 9378 9250 144 126 6.14 99 - 0 - 99 - - 0016 +1 9592 9634 9804 210 168 11.04 99 99 - - - - - -1 10101 10095 9841 258 252 10.78 0 - 99 - 0 - - -1 10755 10671 10435 318 234 7.86 0 - 99 - 0 - - -1 10965 10908 10756 207 150 2.34 0 - 99 - 0 - - -3 11108 11084 10944 162 138 11.07 0 - 99 - - - 0 -3 11303 11303 11118 183 183 3.59 0 - 99 - - - 0 0017 +2 9845 9881 11368 1521 1485 14.06 99 - 99 - - - - 0018 +3 11217 11265 11411 192 144 8.35 99 - - 99 - - - 0019 +1 11449 11470 11625 174 153 6.12 99 99 - - - - - 0020 -3 11714 11678 11514 198 162 9.33 99 - - - - - 99 0021 -3 11942 11903 11775 165 126 5.29 66 33 - - - - 66 +1 11956 11974 12120 162 144 8.46 0 0 - - - 99 - -1 12294 12294 12145 147 147 9.15 0 - - - 0 99 - +1 12232 12283 12462 228 177 3.19 0 0 - - - 99 - +2 12434 12518 12643 207 123 0.97 0 - 0 - - 99 - 0022 -2 12739 12730 11840 897 888 13.65 99 - - - - 99 - -2 13156 13156 13004 150 150 -0.08 0 0 - - 99 0 - +2 13028 13043 13165 135 120 6.36 0 0 0 - 99 - - +1 12832 13024 13194 360 168 7.73 0 0 - - 99 - - -2 13345 13315 13187 156 126 -2.92 0 - - - 99 0 - +1 13318 13342 13593 273 249 -3.04 0 0 - - 99 - - +1 13594 13621 13758 162 135 -8.59 0 0 - - 99 - - 0023 -1 13884 13884 12781 1101 1101 12.94 99 - - - 99 - - 0024 +3 13854 13857 13997 141 138 8.03 99 - - 99 - - - +1 14032 14122 14385 351 261 1.27 0 0 - - 99 - - -3 14393 14363 14193 198 168 1.22 0 0 - - 99 - 0 +2 14543 14555 14806 261 249 0.62 0 - 0 - 99 - - +1 14590 14590 14820 228 228 -3.63 0 0 - - 99 - - 0025 -1 14934 14934 13885 1047 1047 13.95 99 - - - 99 - - +2 14945 15080 15241 294 159 3.46 0 - 0 - - 99 - -1 15861 15765 15643 216 120 -0.07 0 - - - 0 99 - +3 15819 15831 15971 150 138 0.28 0 - - 0 - 99 - -1 16044 16029 15892 150 135 -1.25 0 - - - 0 99 - +2 15917 16133 16372 453 237 -3.02 0 - 0 - - 99 - +2 16373 16481 16855 480 372 4.87 0 - 0 - - 99 - 0026 -2 16954 16948 14987 1965 1959 9.87 99 - - - - 99 - 0027 +3 16806 16863 16991 183 126 7.82 99 - - 99 - - - 0028 -3 17051 17030 16899 150 129 6.97 99 - - - - - 99 0029 +2 16937 16937 17104 165 165 8.76 99 - 99 - - - - +1 17110 17122 17262 150 138 -1.19 0 0 - - 99 - - 0030 -1 17361 17355 16945 414 408 8.06 99 - - - 99 - - -1 17622 17550 17413 207 135 -1.40 0 - - - 0 - 99 -2 17872 17707 17534 336 171 -0.61 0 - - - - 0 99 +3 17658 17973 18203 543 228 0.82 0 - - 0 - - 99 +2 18134 18155 18304 168 147 2.52 0 - 0 - - - 99 0031 -3 18542 18533 17349 1191 1182 9.34 99 - - - - - 99 +1 18760 18781 18954 192 171 4.59 2 2 - - - - 97 -1 19374 19371 19249 123 120 0.00 1 - - 0 1 - 98 +1 19357 19372 19503 144 129 -4.80 0 0 - 0 - - 99 +3 18903 19296 19523 618 225 -2.35 0 - - 0 - - 99 0032 -3 19619 19589 18555 1062 1032 4.73 99 - - - - - 99 -3 19841 19751 19629 210 120 -1.33 0 0 - - 99 - 0 0033 +3 19737 19758 19880 141 120 1.12 79 - - 79 20 - - +1 19774 19903 20034 258 129 -5.36 0 0 - - 99 - - +2 20018 20051 20236 216 183 -5.56 0 0 0 0 99 - - +1 20044 20113 20241 195 126 -2.16 0 0 - 0 99 - - +3 20022 20100 20252 228 150 -4.06 0 - - 0 99 - - +3 20253 20262 20423 168 159 7.99 0 - - 0 99 - - 0034 -1 20472 20436 19543 927 891 4.69 99 - - - 99 - - -3 20735 20717 20565 168 150 -0.13 0 - 99 - - - 0 -2 20857 20845 20714 141 129 1.32 0 - 99 - - 0 - -2 21040 21025 20858 180 165 4.93 0 - 99 0 - 0 -