{ "AOIs": [ { "name": "NZ_BAIQ010000791.175.AOI_01", "filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Bacteriodaceae/Bacteroides_pyogenes/GCF_000428105.1_ASM42810v1_genomic.fna", "color": "gray", "yline": 10, "xstart": 5, "points": [ {"x":0,"y":10}, {"x":800,"y":10} ] } ], "Genes": [ { "name": "orf00001", "orfname": "orf00001", "gene_start": 224, "gene_end": 391, "gene_strand": "-", "real_start": 3438, "real_end": 3605 , "real_strand": "+", "name": "orf00001", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 8.0308174458083, "motifs": "", "function": "", "annotation":"", "protein":"MLQHRIIKFEKTFYTEFVGKGLPYVVVCGLLVDADYPISAALRWRRPPSLGAVVA", "dna":"ATGCTCCAGCACCGGATCATCAAGTTTGAGAAGACCTTCTATACCGAGTTCGTCGGCAAAGGCCTTCCTTACGTAGTTGTTTGCGGTCTCCTTGTTGATGCCGACTATCCTATCTCGGCTGCCTTGCGGTGGAGACGCCCTCCTTCTTTAGGAGCAGTAGTTGCT", "points": [{"x":5.85009140767824,"y":1},{"x":6.25009140767825,"y":2},{"x":10.2115434839384,"y":2},{"x":10.2115434839384,"y":0},{"x":6.25009140767825,"y":0}]} ,{ "name": "sORF_1", "orfname": "sORF_1", "gene_start": 380, "gene_end": 535, "gene_strand": "+", "real_start": 3294, "real_end": 3449 , "real_strand": "-", "name": "sORF_1", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 11.9482893705928, "motifs": "RBS=CTCAAACTTGATGATCCG
", "function": "", "annotation":"", "protein":"VLEHPETTTASPGSVSTIIRTPKRRRNHPRPSSQTCVQAARNSSLPSTVPTx", "dna":"GTGCTGGAGCATCCCGAGACCACTACAGCCTCACCCGGTTCCGTTTCCACTATAATCAGAACACCGAAGCGAAGAAGGAATCACCCTCGACCATCCTCGCAGACATGCGTACAGGCGGCGAGAAACTCTTCCTTGCCATCGACCGTCCCAACCTGA", "points": [{"x":9.92426220945416,"y":0},{"x":9.92426220945416,"y":2},{"x":13.5723165317315,"y":2},{"x":13.9723165317315,"y":1},{"x":13.5723165317315,"y":0}]} ,{ "name": "sORF_8", "orfname": "sORF_8", "gene_start": 410, "gene_end": 550, "gene_strand": "-", "real_start": 3279, "real_end": 3419 , "real_strand": "+", "name": "sORF_8", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 12.5359101593105, "motifs": "RBS=AGACTATCTCAAAGTCTG
", "function": "", "annotation":"", "protein":"LPAADSGWDGRWQGRVSRRLYACLRGWSRVIPSSLRCSDYSGNGTGx", "dna":"TTGCCGGCAGCGGATTCAGGTTGGGACGGTCGATGGCAAGGAAGAGTTTCTCGCCGCCTGTACGCATGTCTGCGAGGATGGTCGAGGGTGATTCCTTCTTCGCTTCGGTGTTCTGATTATAGTGGAAACGGAACCGGGTGA", "points": [{"x":10.7077565944111,"y":1},{"x":11.1077565944111,"y":2},{"x":14.36406372421,"y":2},{"x":14.36406372421,"y":0},{"x":11.1077565944111,"y":0}]} ,{ "name": "sORF_7", "orfname": "sORF_7", "gene_start": 460, "gene_end": 687, "gene_strand": "-", "real_start": 3142, "real_end": 3369 , "real_strand": "+", "name": "sORF_7", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 14.9778009924262, "motifs": "RBS=ATATCTTTACAA
", "function": "", "annotation":"", "protein":"VSVCRAHGCLGDMAIWHGVVMLVASEVYAAVGGHLEIRIRDYLKVCCRQRIQVGTVDGKEEFLAACTHVCEDGRGx", "dna":"GTGAGCGTGTGCAGGGCACATGGATGTCTTGGAGACATGGCGATATGGCACGGTGTAGTAATGCTGGTCGCGTCCGAGGTATATGCAGCAGTTGGAGGACACCTTGAGATCCGTATAAGAGACTATCTCAAAGTCTGTTGCCGGCAGCGGATTCAGGTTGGGACGGTCGATGGCAAGGAAGAGTTTCTCGCCGCCTGTACGCATGTCTGCGAGGATGGTCGAGGGTGA", "points": [{"x":12.0135805693393,"y":1},{"x":12.4135805693393,"y":2},{"x":17.9420214155132,"y":2},{"x":17.9420214155132,"y":0},{"x":12.4135805693393,"y":0}]} ,{ "name": "sORF_2", "orfname": "sORF_2", "gene_start": 484, "gene_end": 693, "gene_strand": "+", "real_start": 3136, "real_end": 3345 , "real_strand": "-", "name": "sORF_2", "color": "#8fbcb9", "yline": 10, "angle": -60, "xtext": 15.3695481849047, "motifs": "RBS=TCGACCATCCTCGCAGAC
", "function": "Putative transposase y4bL/y4kJ/y4tB OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=NGR_a00180 PE=3 SV=1", "annotation":"Species='-'
match=37.037%|Evalue=3.40e-04
UniRef:sp|P55379|Y4BL_SINFN", "protein":"MRTGGEKLFLAIDRPNLNPLPATDFEIVSYTDLKVSSNCCIYLGRDQHYYTVPYRHVSKTSMCPAHAHLx", "dna":"ATGCGTACAGGCGGCGAGAAACTCTTCCTTGCCATCGACCGTCCCAACCTGAATCCGCTGCCGGCAACAGACTTTGAGATAGTCTCTTATACGGATCTCAAGGTGTCCTCCAACTGCTGCATATACCTCGGACGCGACCAGCATTACTACACCGTGCCATATCGCCATGTCTCCAAGACATCCATGTGCCCTGCACACGCTCACTTGTAA", "points": [{"x":12.6403760773048,"y":0},{"x":12.6403760773048,"y":2},{"x":17.6987202925046,"y":2},{"x":18.0987202925046,"y":1},{"x":17.6987202925046,"y":0}]} ,{ "name": "sORF_3", "orfname": "sORF_3", "gene_start": 586, "gene_end": 693, "gene_strand": "+", "real_start": 3136, "real_end": 3243 , "real_strand": "-", "name": "sORF_3", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 16.7014886393314, "motifs": "RBS=TCTTATACGGATCTCAAG
", "function": "", "annotation":"", "protein":"VSSNCCIYLGRDQHYYTVPYRHVSKTSMCPAHAHLx", "dna":"GTGTCCTCCAACTGCTGCATATACCTCGGACGCGACCAGCATTACTACACCGTGCCATATCGCCATGTCTCCAAGACATCCATGTGCCCTGCACACGCTCACTTGTAA", "points": [{"x":15.3042569861583,"y":0},{"x":15.3042569861583,"y":2},{"x":17.6987202925046,"y":2},{"x":18.0987202925046,"y":1},{"x":17.6987202925046,"y":0}]} ,{ "name": "orf00004", "orfname": "orf00004", "gene_start": 669, "gene_end": 872, "gene_strand": "+", "real_start": 2957, "real_end": 3160 , "real_strand": "-", "name": "orf00004", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 20.1227474536432, "motifs": "", "function": "", "annotation":"", "protein":"VPCTRSLVKIYVDGELVVTHVRDYSKGEYRGLSAGKYIERAEKASKELADVMTHIFYDSNMPAKHII", "dna":"GTGCCCTGCACACGCTCACTTGTAAAGATATATGTGGACGGAGAACTCGTTGTAACGCATGTAAGGGACTATAGCAAAGGCGAGTACAGGGGGTTAAGCGCCGGCAAGTACATAGAGCGTGCGGAGAAGGCATCCAAGGAACTCGCAGACGTGATGACGCATATCTTCTACGACTCCAACATGCCTGCGAAACACATTATT", "points": [{"x":17.471924784539,"y":0},{"x":17.471924784539,"y":2},{"x":22.3735701227475,"y":2},{"x":22.7735701227475,"y":1},{"x":22.3735701227475,"y":0}]} ,{ "name": "104.3;BSAP-4", "orfname": "orf00005", "gene_start": 869, "gene_end": 2338, "gene_strand": "-", "real_start": 1491, "real_end": 2960 , "real_strand": "+", "name": "104.3;BSAP-4", "color": "#70c947", "yline": 10, "angle": -60, "xtext": 41.8777748759467, "motifs": "", "function": "104.3;BSAP-4", "annotation":"Evalue=1.87e-71 match=38.012%;", "protein":"MRSKILYFLPFCLLFSCSEESIKEKGINPPPPLTPQKQTVTISTRSAGDGRNDLLGYGYNCLYALADNYKGATNLVIDIDRYINGVGIDPKTKNDVKVPKGKIEVSLAHGDFSQYELYGFSLNDFYKKRSGGLTINSGKYIPWGKIEFTREFDNEISEKATNSFYRVDACINTKRLFFNTFNKKRLKYFLTEDFLFALDNYSAAKIIDDYGTHVLTDIFVGGKMSILATAIEEDKTKNDLVTLTGNILEIIKGNTTEKIKVTNNIKDLSLKIIQHGGAVPIRTQLIKTDEGEIDTKFVSWPEWASSVDIQHSTLIKSDLSHLIPIWEFIEDESKKEEVIQEIRKRSLANSRKNPVQIIKFESFDKKNNRENAIQYTLTPKEVTMGERITITISSHFDSTVRERGKQYPDDYFSINRILKTENCKIISQEVEHTPNNSTRRGSKKLPEKIDIIYQLEVTDYYTPIIYFEQKSFIYSTGRGPKLEDLIFKN", "dna":"ATGAGAAGTAAAATTTTGTATTTTTTGCCGTTTTGTCTATTATTTTCTTGTAGTGAAGAATCAATAAAAGAAAAAGGGATAAATCCTCCACCACCATTAACCCCTCAAAAACAAACAGTAACTATATCAACAAGATCCGCAGGAGATGGCAGAAATGATTTATTAGGGTATGGTTATAATTGTCTATATGCATTAGCCGATAACTATAAAGGAGCAACAAACCTTGTTATCGACATTGATAGATATATAAATGGAGTTGGAATAGATCCGAAAACAAAGAATGACGTTAAAGTTCCAAAAGGAAAAATTGAAGTTTCATTAGCACATGGTGACTTTTCCCAATATGAATTATATGGTTTTTCTTTAAATGACTTTTACAAGAAAAGAAGTGGAGGATTAACGATAAATTCAGGAAAATATATACCTTGGGGAAAAATTGAGTTTACGAGGGAATTTGATAACGAAATTTCGGAAAAAGCCACAAACTCTTTTTACAGAGTAGATGCATGTATTAATACTAAACGGCTATTTTTTAATACCTTCAATAAAAAAAGACTAAAATATTTTCTAACAGAAGATTTTCTTTTTGCACTTGACAACTATTCCGCCGCTAAAATTATTGACGATTATGGAACACATGTATTGACTGATATTTTTGTGGGAGGAAAAATGTCGATTCTTGCAACAGCAATTGAGGAAGACAAGACAAAAAATGATTTAGTAACACTAACTGGAAATATCCTTGAAATAATCAAAGGAAATACCACAGAAAAAATAAAAGTTACAAATAATATCAAAGATTTATCCTTAAAAATAATTCAACATGGAGGAGCAGTACCTATTCGAACGCAGTTAATAAAAACTGATGAAGGAGAAATAGATACAAAATTTGTTAGTTGGCCAGAATGGGCTTCCAGTGTGGATATACAGCATTCGACACTTATAAAAAGCGATTTATCACATCTGATTCCTATCTGGGAATTTATTGAAGATGAATCTAAAAAAGAGGAAGTTATTCAAGAAATAAGGAAAAGAAGTCTTGCTAATAGCAGAAAAAATCCTGTTCAAATAATAAAATTTGAATCTTTCGATAAAAAAAACAACCGGGAAAATGCAATACAATACACATTAACACCCAAAGAGGTTACTATGGGAGAGAGAATAACTATAACCATTTCTTCTCATTTTGATTCAACTGTTAGAGAAAGAGGGAAACAATATCCTGATGACTATTTTTCAATAAATAGAATCTTAAAAACGGAAAATTGTAAAATAATATCTCAAGAGGTCGAACACACTCCTAATAACAGCACAAGAAGGGGCTCAAAAAAACTACCCGAAAAAATAGACATTATATATCAATTGGAAGTTACAGATTATTATACTCCCATCATCTATTTTGAACAAAAAAGTTTTATTTACAGTACAGGAAGAGGGCCCAAATTAGAAGATCTAATTTTTAAAAAC", "points": [{"x":22.6952206842518,"y":1},{"x":23.0952206842518,"y":2},{"x":61.0603290676417,"y":2},{"x":61.0603290676417,"y":0},{"x":23.0952206842518,"y":0}]} ,{ "name": "sORF_4", "orfname": "sORF_4", "gene_start": 2337, "gene_end": 2432, "gene_strand": "+", "real_start": 1397, "real_end": 1492 , "real_strand": "-", "name": "sORF_4", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 62.2747453643249, "motifs": "RBS=TACAAAATTTTACTTCTC
", "function": "", "annotation":"", "protein":"MILFYVMFRCCKLSKKNGLTKCFFDFGFLMFx", "dna":"ATGATACTTTTTTATGTTATGTTTAGATGCTGTAAATTAAGTAAAAAAAATGGTTTGACAAAATGTTTTTTTGATTTTGGCTTTTTGATGTTTTAG", "points": [{"x":61.0342125881431,"y":0},{"x":61.0342125881431,"y":2},{"x":63.1152781405067,"y":2},{"x":63.5152781405067,"y":1},{"x":63.1152781405067,"y":0}]} ,{ "name": "orf00006", "orfname": "orf00006", "gene_start": 2601, "gene_end": 3026, "gene_strand": "+", "real_start": 803, "real_end": 1228 , "real_strand": "-", "name": "orf00006", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 73.4787150692087, "motifs": "", "function": "", "annotation":"", "protein":"MKTNLFLMLITLLVSSLGLSSCDNNKEIADGDWPPMKWETKTKMKEEKSGIFKIQTLKEGGTYLFTCTNYHPSISNVFCNASLVNSSKKNFYEGEWGSVSMNNNVLKVILHPNSNSHGITLHIRLMAGDSACRFVFERTER", "dna":"ATGAAGACTAATTTATTTTTGATGCTAATCACGCTTCTTGTATCAAGCTTGGGACTGTCTTCTTGTGATAATAATAAAGAAATTGCTGATGGAGATTGGCCTCCAATGAAGTGGGAAACGAAAACTAAGATGAAAGAAGAAAAATCTGGGATATTTAAAATTCAAACTCTCAAAGAAGGAGGAACTTATCTATTTACTTGCACAAATTACCATCCGTCCATATCTAATGTTTTTTGCAATGCTTCTCTTGTAAATTCTTCAAAAAAGAATTTCTATGAAGGCGAATGGGGCTCTGTGTCTATGAATAATAATGTTTTAAAGGTTATATTACATCCTAATTCCAATTCTCACGGTATAACTCTGCACATACGACTTATGGCAGGAGATTCGGCTTGTAGATTTGTTTTTGAACGAACGGAAAGA", "points": [{"x":67.9289631757639,"y":0},{"x":67.9289631757639,"y":2},{"x":78.6284669626534,"y":2},{"x":79.0284669626534,"y":1},{"x":78.6284669626534,"y":0}]} ,{ "name": "orf00008", "orfname": "orf00008", "gene_start": 3079, "gene_end": 3219, "gene_strand": "-", "real_start": 610, "real_end": 750 , "real_strand": "+", "name": "orf00008", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 82.2407939409768, "motifs": "", "function": "", "annotation":"", "protein":"MMIRNYAKQSCGLFTRMAGKIAAMTFMQYVNFSNHRPIRQIKYALI", "dna":"ATGATGATACGCAACTATGCGAAGCAGTCATGCGGGCTTTTTACCCGAATGGCAGGTAAAATCGCAGCTATGACATTCATGCAATATGTCAATTTCAGTAATCATCGTCCTATCCGACAGATAAAATATGCGCTAATT", "points": [{"x":80.4126403760773,"y":1},{"x":80.8126403760773,"y":2},{"x":84.0689475058762,"y":2},{"x":84.0689475058762,"y":0},{"x":80.8126403760773,"y":0}]} ,{ "name": "sORF_5", "orfname": "sORF_5", "gene_start": 3235, "gene_end": 3414, "gene_strand": "+", "real_start": 415, "real_end": 594 , "real_strand": "-", "name": "sORF_5", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 86.8242360929747, "motifs": "RBS=CATGAGCTTGTCGTTGAG
", "function": "", "annotation":"", "protein":"LGEYSFDTFSEAFINPGGCSPIFLIQPIGNLQGNIRSIEELLLCTCALRYPLPPSIMQSx", "dna":"TTGGGAGAATATAGTTTCGATACGTTTTCTGAAGCGTTTATAAACCCGGGAGGGTGTTCGCCAATTTTTCTGATTCAGCCGATAGGGAACCTCCAAGGTAATATTCGCAGCATCGAAGAGCTTTTGTTGTGCACATGTGCACTGAGATATCCCTTGCCTCCAAGCATCATGCAGTCATGA", "points": [{"x":84.4868111778532,"y":0},{"x":84.4868111778532,"y":2},{"x":88.7616610080961,"y":2},{"x":89.1616610080961,"y":1},{"x":88.7616610080961,"y":0}]} ,{ "name": "sORF_6", "orfname": "sORF_6", "gene_start": 3309, "gene_end": 3404, "gene_strand": "-", "real_start": 425, "real_end": 520 , "real_strand": "+", "name": "sORF_6", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 87.6599634369287, "motifs": "RBS=TTTATATATCATGACTGC
", "function": "", "annotation":"", "protein":"MMLGGKGYLSAHVHNKSSSMLRILPWRFPIGx", "dna":"ATGATGCTTGGAGGCAAGGGATATCTCAGTGCACATGTGCACAACAAAAGCTCTTCGATGCTGCGAATATTACCTTGGAGGTTCCCTATCGGCTGA", "points": [{"x":86.4194306607469,"y":1},{"x":86.8194306607469,"y":2},{"x":88.9004962131105,"y":2},{"x":88.9004962131105,"y":0},{"x":86.8194306607469,"y":0}]} ,{ "name": "orf00010", "orfname": "orf00010", "gene_start": 3439, "gene_end": 3603, "gene_strand": "-", "real_start": 226, "real_end": 390 , "real_strand": "+", "name": "orf00010", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 91.9561243144424, "motifs": "", "function": "", "annotation":"", "protein":"LKRAERDVYRQKIIKKFHNITIYKRSLGTHLPGNIPLDQVPQEERNISIHLLVG", "dna":"TTGAAGAGAGCGGAACGGGACGTTTACCGGCAAAAAATAATTAAGAAATTTCATAACATAACTATTTATAAACGAAGCTTGGGGACTCATTTACCCGGAAACATCCCCTTGGACCAAGTGCCGCAAGAAGAAAGAAACATTTCTATTCATCTACTCGTTGGT", "points": [{"x":89.8145729955602,"y":1},{"x":90.2145729955602,"y":2},{"x":94.0976756333246,"y":2},{"x":94.0976756333246,"y":0},{"x":90.2145729955602,"y":0}]} ,{ "name": "orf00013", "orfname": "orf00013", "gene_start": 3655, "gene_end": 3798, "gene_strand": "-", "real_start": 31, "real_end": 174 , "real_strand": "+", "name": "orf00013", "color": "#d5dce8", "yline": 10, "angle": -60, "xtext": 97.3230608513972, "motifs": "", "function": "", "annotation":"", "protein":"LTFWHFRERIFLRITLRLFIYKQLIILHIKRQSTVWSALSLTYSGKK", "dna":"TTGACGTTTTGGCACTTTCGAGAGAGAATATTTTTGCGAATCACTCTTCGTCTATTTATTTATAAACAACTGATAATCTTACATATAAAAAGACAATCAACCGTTTGGTCAGCTCTTTCCCTCACTTATTCGGGCAAAAAG", "points": [{"x":95.4557325672499,"y":1},{"x":95.8557325672499,"y":2},{"x":99.1903891355445,"y":2},{"x":99.1903891355445,"y":0},{"x":95.8557325672499,"y":0}]} ]}