{
"AOIs": [ 
{
"name": "NZ_ATZH010000681.4.AOI_01",
"filename": "/data/pg-molgen/USERS/Vicky/Genomes_Bacteroidales/Bacteriodaceae/Bacteroides_pyogenes/GCF_000428105.1_ASM42810v1_genomic.fna",
"color": "gray",
"yline": 10,
"xstart": 5,
"points": [ {"x":0,"y":10}, {"x":800,"y":10} ]
}
],
"Genes": [
{
"name": "orf00003",
"orfname": "orf00003",
"gene_start": 138,
"gene_end": 302,
"gene_strand": "+",
"real_start": 139,
"real_end": 303 ,
"real_strand": "+",
"name": "orf00003",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     6.62451068955134,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"LKRAERDVYRQKIIKKFHNITIYKRSLGTHLPGNIPLDQVPQEERNISIHLLVG",
"dna":"TTGAAGAGAGCGGAACGGGACGTTTACCGGCAAAAAATAATTAAGAAATTTCATAACATAACTATTTATAAACGAAGCTTGGGGACTCATTTACCCGGAAACATCCCCTTGGACCAAGTGCCGCAAGAAGAAAGAAACATTTCTATTCATCTACTCGTTGGT",
"points": [{"x":4.1553748870822,"y":0},{"x":4.1553748870822,"y":2},{"x":8.69364649202048,"y":2},{"x":9.09364649202048,"y":1},{"x":8.69364649202048,"y":0}]}
,{
"name": "sORF_5",
"orfname": "sORF_5",
"gene_start": 327,
"gene_end": 506,
"gene_strand": "-",
"real_start": 328,
"real_end": 507 ,
"real_strand": "-",
"name": "sORF_5",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     12.5414031918097,
"motifs":    "RBS=CATGAGCTTGTCGTTGAG<br>",
"function":  "",
"annotation":"",
"protein":"LGEYSFDTFSEAFINPGGCSPIFLIQPIGNLQGNIRSIEELLLCTCALRYPLPPSIMQSx",
"dna":"TTGGGAGAATATAGTTTCGATACGTTTTCTGAAGCGTTTATAAACCCGGGAGGGTGTTCGCCAATTTTTCTGATTCAGCCGATAGGGAACCTCCAAGGTAATATTCGCAGCATCGAAGAGCTTTTGTTGTGCACATGTGCACTGAGATATCCCTTGCCTCCAAGCATCATGCAGTCATGA",
"points": [{"x":9.84643179765131,"y":1},{"x":10.2464317976513,"y":2},{"x":15.2363745859681,"y":2},{"x":15.2363745859681,"y":0},{"x":10.2464317976513,"y":0}]}
,{
"name": "sORF_1",
"orfname": "sORF_1",
"gene_start": 337,
"gene_end": 432,
"gene_strand": "+",
"real_start": 338,
"real_end": 433 ,
"real_strand": "+",
"name": "sORF_1",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     11.5778380006022,
"motifs":    "RBS=TTTATATATCATGACTGC<br>",
"function":  "",
"annotation":"",
"protein":"MMLGGKGYLSAHVHNKSSSMLRILPWRFPIGx",
"dna":"ATGATGCTTGGAGGCAAGGGATATCTCAGTGCACATGTGCACAACAAAAGCTCTTCGATGCTGCGAATATTACCTTGGAGGTTCCCTATCGGCTGA",
"points": [{"x":10.1475459199036,"y":0},{"x":10.1475459199036,"y":2},{"x":12.6081300813008,"y":2},{"x":13.0081300813008,"y":1},{"x":12.6081300813008,"y":0}]}
,{
"name": "sORF_2",
"orfname": "sORF_2",
"gene_start": 411,
"gene_end": 662,
"gene_strand": "+",
"real_start": 412,
"real_end": 663 ,
"real_strand": "+",
"name": "sORF_2",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     16.1547726588377,
"motifs":    "RBS=CGAATATTACC<br>",
"function":  "",
"annotation":"",
"protein":"LEVPYRLNQKNWRTPSRVYKRFRKRIETIFSQLNDKLMMIRNYAKQSCGLFTRMAGKIAAMTFMQYVNFSNHRPIRQIKYALIx",
"dna":"TTGGAGGTTCCCTATCGGCTGAATCAGAAAAATTGGCGAACACCCTCCCGGGTTTATAAACGCTTCAGAAAACGTATCGAAACTATATTCTCCCAACTCAACGACAAGCTCATGATGATACGCAACTATGCGAAGCAGTCATGCGGGCTTTTTACCCGAATGGCAGGTAAAATCGCAGCTATGACATTCATGCAATATGTCAATTTCAGTAATCATCGTCCTATCCGACAGATAAAATATGCGCTAATTTAA",
"points": [{"x":12.3757904245709,"y":0},{"x":12.3757904245709,"y":2},{"x":19.5337548931045,"y":2},{"x":19.9337548931045,"y":1},{"x":19.5337548931045,"y":0}]}
,{
"name": "sORF_3",
"orfname": "sORF_3",
"gene_start": 522,
"gene_end": 662,
"gene_strand": "+",
"real_start": 523,
"real_end": 663 ,
"real_strand": "+",
"name": "sORF_3",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     17.8259560373382,
"motifs":    "RBS=CAACTCAACGACAAGCTC<br>",
"function":  "",
"annotation":"",
"protein":"MMIRNYAKQSCGLFTRMAGKIAAMTFMQYVNFSNHRPIRQIKYALIx",
"dna":"ATGATGATACGCAACTATGCGAAGCAGTCATGCGGGCTTTTTACCCGAATGGCAGGTAAAATCGCAGCTATGACATTCATGCAATATGTCAATTTCAGTAATCATCGTCCTATCCGACAGATAAAATATGCGCTAATTTAA",
"points": [{"x":15.7181571815718,"y":0},{"x":15.7181571815718,"y":2},{"x":19.5337548931045,"y":2},{"x":19.9337548931045,"y":1},{"x":19.5337548931045,"y":0}]}
,{
"name": "orf00007",
"orfname": "orf00007",
"gene_start": 715,
"gene_end": 1140,
"gene_strand": "-",
"real_start": 716,
"real_end": 1141 ,
"real_strand": "-",
"name": "orf00007",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     27.9283348389039,
"motifs":    "",
"function":  "",
"annotation":"",
"protein":"MKTNLFLMLITLLVSSLGLSSCDNNKEIADGDWPPMKWETKTKMKEEKSGIFKIQTLKEGGTYLFTCTNYHPSISNVFCNASLVNSSKKNFYEGEWGSVSMNNNVLKVILHPNSNSHGITLHIRLMAGDSACRFVFERTER",
"dna":"ATGAAGACTAATTTATTTTTGATGCTAATCACGCTTCTTGTATCAAGCTTGGGACTGTCTTCTTGTGATAATAATAAAGAAATTGCTGATGGAGATTGGCCTCCAATGAAGTGGGAAACGAAAACTAAGATGAAAGAAGAAAAATCTGGGATATTTAAAATTCAAACTCTCAAAGAAGGAGGAACTTATCTATTTACTTGCACAAATTACCATCCGTCCATATCTAATGTTTTTTGCAATGCTTCTCTTGTAAATTCTTCAAAAAAGAATTTCTATGAAGGCGAATGGGGCTCTGTGTCTATGAATAATAATGTTTTAAAGGTTATATTACATCCTAATTCCAATTCTCACGGTATAACTCTGCACATACGACTTATGGCAGGAGATTCGGCTTGTAGATTTGTTTTTGAACGAACGGAAAGA",
"points": [{"x":21.5296597410419,"y":1},{"x":21.9296597410419,"y":2},{"x":34.327009936766,"y":2},{"x":34.327009936766,"y":0},{"x":21.9296597410419,"y":0}]}
,{
"name": "sORF_4",
"orfname": "sORF_4",
"gene_start": 1309,
"gene_end": 1404,
"gene_strand": "-",
"real_start": 1310,
"real_end": 1405 ,
"real_strand": "-",
"name": "sORF_4",
"color":     "#d5dce8",
"yline":     10,
"angle":     -60,
"xtext":     40.8461306835291,
"motifs":    "RBS=TACAAAATTTTACTTCTC<br>",
"function":  "",
"annotation":"",
"protein":"MILFYVMFRCCKLSKKNGLTKCFFDFGFLMFx",
"dna":"ATGATACTTTTTTATGTTATGTTTAGATGCTGTAAATTAAGTAAAAAAAATGGTTTGACAAAATGTTTTTTTGATTTTGGCTTTTTGATGTTTTAG",
"points": [{"x":39.4158386028305,"y":1},{"x":39.8158386028305,"y":2},{"x":42.2764227642276,"y":2},{"x":42.2764227642276,"y":0},{"x":39.8158386028305,"y":0}]}
,{
"name": "104.3;BSAP-4",
"orfname": "orf00008",
"gene_start": 1403,
"gene_end": 2872,
"gene_strand": "+",
"real_start": 1404,
"real_end": 2873 ,
"real_strand": "+",
"name": "104.3;BSAP-4",
"color":     "#70c947",
"yline":     10,
"angle":     -60,
"xtext":     64.3631436314363,
"motifs":    "",
"function":  "104.3;BSAP-4",
"annotation":"Evalue=1.87e-71 match=38.012%;",
"protein":"MRSKILYFLPFCLLFSCSEESIKEKGINPPPPLTPQKQTVTISTRSAGDGRNDLLGYGYNCLYALADNYKGATNLVIDIDRYINGVGIDPKTKNDVKVPKGKIEVSLAHGDFSQYELYGFSLNDFYKKRSGGLTINSGKYIPWGKIEFTREFDNEISEKATNSFYRVDACINTKRLFFNTFNKKRLKYFLTEDFLFALDNYSAAKIIDDYGTHVLTDIFVGGKMSILATAIEEDKTKNDLVTLTGNILEIIKGNTTEKIKVTNNIKDLSLKIIQHGGAVPIRTQLIKTDEGEIDTKFVSWPEWASSVDIQHSTLIKSDLSHLIPIWEFIEDESKKEEVIQEIRKRSLANSRKNPVQIIKFESFDKKNNRENAIQYTLTPKEVTMGERITITISSHFDSTVRERGKQYPDDYFSINRILKTENCKIISQEVEHTPNNSTRRGSKKLPEKIDIIYQLEVTDYYTPIIYFEQKSFIYSTGRGPKLEDLIFKN",
"dna":"ATGAGAAGTAAAATTTTGTATTTTTTGCCGTTTTGTCTATTATTTTCTTGTAGTGAAGAATCAATAAAAGAAAAAGGGATAAATCCTCCACCACCATTAACCCCTCAAAAACAAACAGTAACTATATCAACAAGATCCGCAGGAGATGGCAGAAATGATTTATTAGGGTATGGTTATAATTGTCTATATGCATTAGCCGATAACTATAAAGGAGCAACAAACCTTGTTATCGACATTGATAGATATATAAATGGAGTTGGAATAGATCCGAAAACAAAGAATGACGTTAAAGTTCCAAAAGGAAAAATTGAAGTTTCATTAGCACATGGTGACTTTTCCCAATATGAATTATATGGTTTTTCTTTAAATGACTTTTACAAGAAAAGAAGTGGAGGATTAACGATAAATTCAGGAAAATATATACCTTGGGGAAAAATTGAGTTTACGAGGGAATTTGATAACGAAATTTCGGAAAAAGCCACAAACTCTTTTTACAGAGTAGATGCATGTATTAATACTAAACGGCTATTTTTTAATACCTTCAATAAAAAAAGACTAAAATATTTTCTAACAGAAGATTTTCTTTTTGCACTTGACAACTATTCCGCCGCTAAAATTATTGACGATTATGGAACACATGTATTGACTGATATTTTTGTGGGAGGAAAAATGTCGATTCTTGCAACAGCAATTGAGGAAGACAAGACAAAAAATGATTTAGTAACACTAACTGGAAATATCCTTGAAATAATCAAAGGAAATACCACAGAAAAAATAAAAGTTACAAATAATATCAAAGATTTATCCTTAAAAATAATTCAACATGGAGGAGCAGTACCTATTCGAACGCAGTTAATAAAAACTGATGAAGGAGAAATAGATACAAAATTTGTTAGTTGGCCAGAATGGGCTTCCAGTGTGGATATACAGCATTCGACACTTATAAAAAGCGATTTATCACATCTGATTCCTATCTGGGAATTTATTGAAGATGAATCTAAAAAAGAGGAAGTTATTCAAGAAATAAGGAAAAGAAGTCTTGCTAATAGCAGAAAAAATCCTGTTCAAATAATAAAATTTGAATCTTTCGATAAAAAAAACAACCGGGAAAATGCAATACAATACACATTAACACCCAAAGAGGTTACTATGGGAGAGAGAATAACTATAACCATTTCTTCTCATTTTGATTCAACTGTTAGAGAAAGAGGGAAACAATATCCTGATGACTATTTTTCAATAAATAGAATCTTAAAAACGGAAAATTGTAAAATAATATCTCAAGAGGTCGAACACACTCCTAATAACAGCACAAGAAGGGGCTCAAAAAAACTACCCGAAAAAATAGACATTATATATCAATTGGAAGTTACAGATTATTATACTCCCATCATCTATTTTGAACAAAAAAGTTTTATTTACAGTACAGGAAGAGGGCCCAAATTAGAAGATCTAATTTTTAAAAAC",
"points": [{"x":42.2463113520024,"y":0},{"x":42.2463113520024,"y":2},{"x":86.0799759108702,"y":2},{"x":86.4799759108702,"y":1},{"x":86.0799759108702,"y":0}]}
]}