Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSTW010000251.195.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSTW010000251.195.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSTW010000251.195.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSTW010000251.195.AOI_01 Sequence length = 14628 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 397 376 227 168 147 -0.02 0 - 99 - - 0 - 0001 +2 2 134 418 414 282 3.25 99 - 99 - - - - 0002 -2 562 544 398 162 144 0.17 99 - - - - 99 - +1 571 571 696 123 123 -14.06 0 0 - 99 - - - 0003 +3 444 486 878 432 390 6.19 99 - - 99 - - - 0004 -2 1027 982 842 183 138 -2.57 99 - - - - 99 - 0005 +3 1158 1218 1343 183 123 0.61 37 0 - 37 - - 62 +3 1506 1539 1721 213 180 -3.11 0 - 0 0 - 99 - +2 1403 1658 1834 429 174 -1.50 0 - 0 - - 99 - -1 1968 1929 1801 165 126 -7.28 0 - - - 0 99 - +3 1842 1953 2084 240 129 -2.35 0 - 0 0 - 99 - 0006 -2 2389 2350 1448 939 900 10.50 99 - - - - 99 - 0007 +2 2147 2183 2608 459 423 -0.99 99 - 99 - - - - +3 2283 2520 2654 369 132 0.11 0 - - 0 - 99 - +3 2655 2664 2837 180 171 -4.78 0 - - 0 - 99 - +2 2990 2990 3133 141 141 -2.88 0 - 0 - - 99 - -3 3413 3284 3000 411 282 -7.06 0 - - - - 99 0 +2 3134 3197 3439 303 240 -2.01 0 - 0 - - 99 - -3 3677 3647 3414 261 231 -4.78 0 - - - - 99 0 -1 4230 4182 4060 168 120 -7.68 0 - 0 - 0 99 - 0008 +2 3521 3575 4306 783 729 -1.71 0 - 0 - - 99 - -3 4436 4418 4218 216 198 -7.58 0 - - - - 99 0 0009 -2 4762 4756 2390 2370 2364 10.51 99 - - - - 99 - 0010 +3 4602 4704 4847 243 141 -0.43 99 - 0 99 - - - +3 4848 4881 5012 162 129 -0.42 0 - 0 0 - 99 - -1 5058 5046 4906 150 138 -3.63 0 - 0 - 0 99 - +2 4520 4850 5116 594 264 -2.53 0 - 0 - - 99 - +3 5121 5136 5264 141 126 -4.64 0 - 0 0 - 99 - +2 5117 5177 5305 186 126 2.91 0 - 0 - - 99 - 0011 -2 5458 5446 4769 687 675 13.33 99 - - - - 99 - 0012 +3 5265 5355 5591 324 234 -1.41 99 - - 99 - - - 0013 -3 5756 5648 5499 255 147 2.90 99 - - - - - 99 +2 5615 5660 5827 210 165 -3.03 0 - 0 0 - 99 - +3 5607 5682 5885 276 201 -0.04 0 - - 0 - 99 - +3 6036 6036 6182 144 144 -5.34 0 - - 0 - 99 - -1 6423 6414 6271 150 141 -7.22 0 0 0 0 0 99 0 -3 6452 6371 6162 288 207 -5.96 0 0 - - - 99 0 +3 6189 6192 6485 294 291 -3.18 0 0 - 0 - 99 - +1 6070 6445 6606 534 159 -11.06 0 0 0 - - 99 - -1 6705 6693 6562 141 129 -11.93 0 - 0 - 0 99 - +2 6275 6635 6820 543 183 -0.05 0 - 0 0 - 99 0 +3 6597 6747 6887 288 138 -2.71 0 - - 0 - 99 - 0014 -2 7015 7012 5633 1380 1377 9.28 99 - - - - 99 - -1 7137 7002 6880 255 120 -2.82 5 - - - 5 94 - 0015 -2 7264 7264 7073 189 189 -1.36 88 - - 11 - 88 - +3 7077 7119 7268 189 147 -3.82 4 - - 4 - 95 - 0016 -3 7355 7304 7152 201 150 0.19 99 - - - - - 99 -1 7554 7509 7261 291 246 -2.02 0 99 - - 0 - - -3 7883 7787 7623 258 162 -2.66 0 99 - - - - 0 0017 +1 7231 7237 7887 654 648 8.06 99 99 - - - - - 0018 -1 8064 7905 7639 423 264 -4.76 99 - - - 99 - - -3 8417 8384 8229 186 153 -4.38 0 - - 99 - - 0 +1 8290 8404 8529 237 123 -14.09 0 0 - 99 - - - -2 8635 8599 8477 156 120 0.02 0 - - 99 - 0 0 -3 8645 8636 8424 219 210 -2.61 0 - - 99 - - 0 -3 8777 8771 8646 129 123 -0.57 0 - - 99 - - 0 0019 +3 7902 7908 8978 1074 1068 9.14 99 - - 99 - - - 0020 -3 8981 8981 8850 129 129 -3.27 39 - - - - 60 39 -2 9277 9232 9020 255 210 -0.39 0 - 99 - - 0 - +3 9111 9150 9281 168 129 -5.74 0 - 99 0 - 0 - +3 9564 9564 9701 135 135 -5.93 0 - 99 0 - 0 - -1 9957 9957 9808 147 147 1.04 0 - 99 - 0 0 - 0021 +2 8969 8984 9961 990 975 12.63 99 - 99 - - - - 0022 -2 10090 10006 9734 354 270 2.67 99 - - - - 99 - -2 10276 10216 10091 183 123 -0.77 0 - - 99 - 0 0 -3 10328 10298 10071 255 225 3.10 0 - - 99 - - 0 +1 10114 10120 10335 219 213 -6.52 0 0 - 99 - - - -3 10478 10469 10329 147 138 -3.36 0 - - 99 - - 0 +2 10388 10403 10555 165 150 -3.36 0 - 0 99 - - - -1 10632 10587 10438 192 147 -6.19 0 - - 99 0 - - -2 10798 10636 10505 291 129 -3.34 0 - - 99 0 0 0 0023 +3 9933 9942 11153 1218 1209 9.76 99 - - 99 - - - -3 11165 11132 10494 669 636 0.60 0 - - 99 - - 0 0024 +2 11027 11150 11815 786 663 8.78 99 - 99 - - - - 0025 -2 11839 11833 11615 222 216 1.72 99 - - - - 99 - 0026 +3 11796 11826 12224 426 396 9.89 99 - - 99 - - - -2 12229 12058 11840 387 216 2.01 0 - - 99 - 0 - -3 12233 12221 12051 180 168 -0.93 0 - - 99 - 0 0 0027 +1 12076 12091 12258 180 165 1.06 99 99 - - - - - +3 12297 12360 12527 228 165 -4.08 0 - - 0 - 99 - -3 12587 12554 12423 162 129 -0.82 0 - 0 - - 99 0 +2 12386 12995 13129 741 132 -1.82 0 - 0 - - 99 - 0028 -2 13285 13276 12308 975 966 12.80 99 - - - - 99 - 0029 -3 13364 13346 13206 156 138 -3.83 90 - 9 - - - 90 0030 +2 13130 13163 13405 273 240 -6.00 99 - 99 - - - - +2 13406 13424 13660 252 234 -0.89 0 - 0 - - 99 - +2 14018 14087 14287 267 198 -2.26 0 - 0 - - 99 - +1 14302 14332 14520 216 186 -9.69 0 0 - - - 99 - +3 14454 14454 14603 147 147 -6.95 0 - - 0 - 99 - 0031 -2 14617 14593 13343 1272 1248 11.02 99 - - - - 99 -