Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSTF010000371.148.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSTF010000371.148.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSTF010000371.148.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSTF010000371.148.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 1 187 372 369 183 0.16 0 0 - 0 0 - 99 +3 60 93 428 366 333 1.92 0 - - 0 0 - 99 -1 462 459 79 381 378 -5.78 0 - - - 0 - 99 +2 467 596 763 294 165 -1.63 0 - 0 - - 99 0 -3 905 758 579 324 177 -9.73 0 - 0 - - 99 0 +3 936 1035 1160 222 123 0.98 0 - - 0 - 99 0 +1 1345 1390 1518 171 126 -10.27 0 0 0 - - 99 0 -3 1532 1463 1263 267 198 -7.12 0 - - - - 99 0 0001 -2 1996 1894 404 1590 1488 11.23 99 - - - - 99 - 0002 +2 1394 1577 2068 672 489 1.64 99 - 99 - - - - +1 1939 1945 2121 180 174 2.72 0 0 - - 99 - - -3 2513 2495 2337 174 156 -8.56 0 - 0 - 99 - 0 +2 2069 2435 2590 519 153 -4.97 0 0 0 - 99 - - +3 2493 2499 2633 138 132 -11.42 0 0 - 0 99 - - 0003 -1 2835 2799 1909 924 888 12.41 99 - - - 99 - - 0004 +1 2410 2518 2865 453 345 3.40 99 99 - - - - - +2 2858 2870 2998 138 126 -5.01 0 - 0 - - 99 - +3 2898 3045 3203 303 156 -2.75 0 - - 0 - 99 - -1 3399 3375 3223 174 150 0.97 0 - - - 0 99 - +1 3436 3586 3729 291 141 -9.12 0 0 - - - 99 - -1 3786 3786 3661 123 123 -3.97 0 - 0 - 0 99 - +2 3926 3935 4198 270 261 1.42 0 - 0 - - 99 - 0005 -2 4213 4057 2828 1383 1227 11.21 99 - - - - 99 - -1 4323 4272 4144 177 126 -0.69 0 - - 99 0 - - -3 4550 4379 4188 360 189 1.69 0 - - 99 - - 0 +2 4529 4595 4810 279 213 -1.52 0 - 0 99 - - - -3 4853 4823 4701 150 120 2.86 0 - - 99 - - 0 -3 5078 5027 4854 222 171 -5.69 0 - - 99 - - 0 -1 5085 5082 4894 189 186 -10.14 0 - - 99 0 - 0 0006 +3 4134 4152 5150 1014 996 8.82 99 - - 99 - - - 0007 +1 5119 5125 5274 153 147 5.81 99 99 - - 0 - - -1 5403 5256 5122 279 132 0.25 0 99 - - 0 - - +1 5275 5401 5526 249 123 -3.31 0 0 - - - - 99 +1 5647 5665 5787 138 120 4.49 0 0 - - 0 - 99 -2 5974 5953 5825 147 126 -8.48 0 - - 0 0 0 99 +3 5760 5850 5978 216 126 1.85 0 - - 0 0 0 99 -1 5985 5637 5404 579 231 -5.81 0 - - - 0 - 99 -1 6228 6213 6064 162 147 -11.27 0 - - - 0 - 99 +1 6124 6127 6270 144 141 0.45 0 0 - 0 - 0 99 -2 6280 6262 6116 162 144 -13.27 0 - - 0 - 0 99 0008 -3 6578 6530 5166 1410 1362 8.94 99 - - - - - 99 0009 +3 6285 6312 6590 303 276 -1.69 99 - - 99 - - - 0010 +1 6430 6499 6627 195 126 0.01 99 99 - - - - - +3 6666 6729 7115 447 384 4.83 0 - - 0 - - 99 +3 7116 7140 7292 174 150 0.14 0 0 - 0 - - 99 -2 7393 7372 7232 159 138 -3.57 0 0 - - - 0 99 +1 6787 6886 7476 687 588 1.69 0 0 - - - - 99 -1 7698 7623 7498 198 123 -14.52 0 - 0 - 0 - 99 +2 7364 7493 7705 339 210 -4.67 0 - 0 - - - 99 +3 7542 7644 8162 618 516 3.68 0 - - 0 - - 99 +1 7873 7936 8205 330 267 0.81 0 0 - - - - 99 +2 8081 8147 8269 186 120 -6.18 0 - 0 - - - 99 -2 8410 8410 8243 165 165 -7.18 0 - - - - 0 99 +1 8368 8374 8511 141 135 -4.81 0 0 - 1 - - 98 +1 8512 8512 8661 147 147 -2.97 0 0 - 0 - - 99 +1 8662 8665 8832 168 165 -1.05 0 0 - 0 - - 99 -2 8914 8881 8669 243 210 -2.14 0 - - 0 - 0 99 +3 8358 8802 8981 621 177 4.69 0 - - 0 - - 99 +2 8966 8978 9103 135 123 -11.31 0 - 0 - - - 99 0011 -3 9290 9269 6651 2637 2616 8.60 99 - - - - - 99 0012 +2 9323 9338 9484 159 144 0.29 99 - 99 - 0 0 - 0013 -1 9603 9402 9253 348 147 -2.52 99 - - - 99 - - +2 9485 9503 9652 165 147 -2.90 0 99 0 - - - 0 -3 9683 9617 9495 186 120 0.33 0 99 0 0 - - 0 +2 9767 9815 9940 171 123 -8.98 0 99 0 - - 0 - -3 9980 9965 9834 144 129 2.52 0 99 - - - 0 0 -2 10045 9928 9791 252 135 -7.88 0 99 0 - - 0 - -1 10239 10116 9925 312 189 -1.15 0 99 - - 0 - - 0014 +1 9382 9403 10368 984 963 10.88 99 99 - - - - - -3 10718 10703 10572 144 129 0.75 0 99 - 0 - 0 0 0015 +1 10369 10390 10731 360 339 8.43 99 99 - - - - - 0016 -1 10812 10785 10621 189 162 -4.91 99 - - - 99 - - +2 10748 10889 11101 351 210 -3.30 0 - 0 - - 99 - +3 11007 11037 11201 192 162 -2.82 0 - - 0 - 99 - +2 11102 11138 11344 240 204 -5.29 0 - 0 - - 99 0 -3 11348 11318 11103 243 213 -9.67 0 - 0 - - 99 0 +3 11202 11214 11366 162 150 0.91 0 - - 0 - 99 - 0017 -2 11458 11443 10796 660 645 10.55 99 - - - - 99 - 0018 -1 11682 11604 11383 297 219 -1.50 99 - - - 99 - - +3 11763 11763 11912 147 147 1.77 0 - - 0 - - 99 +1 12091 12097 12225 132 126 1.48 0 0 - 0 - - 99 -2 12484 12388 12248 234 138 -6.47 0 - - 0 - 0 99 +3 12045 12087 12500 453 411 4.69 0 - - 0 - - 99 0019 -3 12530 12518 11478 1050 1038 12.25 99 - 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99 - - - - +1 18313 18358 18483 168 123 -11.49 0 0 0 - - 99 - +2 18329 18365 18487 156 120 1.22 0 - 0 - - 99 - +3 18543 18582 18716 171 132 1.05 0 - - 0 - 99 - +2 18647 18752 18880 231 126 -7.97 0 - 0 - - 99 0 +2 18881 18896 19150 267 252 -0.19 0 - 0 - - 99 - +3 19344 19350 19493 147 141 -7.03 0 - 0 0 - 99 - -3 19526 19502 19377 147 123 -7.21 0 - 0 - - 99 0 +2 19151 19169 19711 558 540 1.98 0 - 0 - - 99 - +3 19569 19599 19748 177 147 -5.06 0 - - 0 - 99 - -1 19863 19839 19687 174 150 -13.48 0 - - - 0 99 - +2 19931 19949 20098 165 147 -2.66 0 - 0 - - 99 - 0032 -2 20101 20080 18176 1923 1902 10.69 99 - - - - 99 - 0033 -1 20250 20250 20077 171 171 -2.98 99 - - - 99 - -