Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSJG010000161.674.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSJG010000161.674.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSJG010000161.674.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSJG010000161.674.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 377 266 81 294 183 -2.34 0 - - 99 0 - 0 0001 +3 3 12 407 402 393 4.16 99 - - 99 0 - - +1 469 502 624 153 120 -2.62 0 0 99 - - 0 - -2 850 601 317 531 282 -2.09 0 - 99 - 0 0 - 0002 +2 269 365 928 657 561 6.88 99 - 99 - - - - 0003 +3 753 768 980 225 210 -6.07 99 - - 99 - - - 0004 +2 1184 1220 1360 174 138 -1.82 99 - 99 - - - - +3 1308 1314 1469 159 153 -1.46 0 - - 0 - 99 - +2 1457 1469 1702 243 231 1.19 0 0 0 - - 99 - +1 1351 1492 1806 453 312 -10.26 0 0 - - - 99 - +3 1893 1908 2054 159 144 -0.91 0 0 0 0 - 99 - +1 1912 1927 2070 156 141 -8.81 0 0 0 - - 99 - +3 2118 2190 2339 219 147 -3.16 0 - 0 0 - 99 - -1 2628 2595 2395 231 198 -2.74 0 - 0 - 0 99 - 0005 +2 1745 2129 2749 1002 618 -2.37 0 - 0 - - 99 - +1 2737 2764 2922 183 156 -10.11 0 0 - - - 99 - -1 3120 3009 2782 336 225 -6.97 0 - - - 0 99 - +1 3004 3070 3198 192 126 -8.56 0 0 0 - - 99 - +2 2978 3095 3247 267 150 1.98 0 - 0 - - 99 - +2 3248 3278 3424 174 144 -0.25 0 - 0 0 - 99 - +3 3282 3294 3428 144 132 -1.91 0 - - 0 - 99 - +3 3468 3483 3662 192 177 -0.97 0 - - 0 - 99 - +1 3580 3586 3789 207 201 -6.36 0 0 - - - 99 - -3 4082 4079 3957 123 120 -8.67 0 - 0 - - 99 0 -1 4161 4131 4009 150 120 -9.93 0 - 0 - 0 99 - -3 4289 4286 4083 204 201 -0.56 0 - 0 0 - 99 0 +2 3722 4040 4330 606 288 -3.44 0 - 0 - - 99 - 0006 -2 4360 4357 1244 3114 3111 7.27 99 - - - - 99 - +3 4068 4179 4364 294 183 2.27 0 - - 0 - 99 - +2 4346 4421 4546 198 123 -5.56 0 - 0 - - 99 0 +2 4739 4766 4969 228 201 3.44 0 - 0 - - 99 - +3 4920 4956 5090 168 132 -4.73 0 - - 0 - 99 - +2 5072 5111 5305 231 192 -0.54 0 - 0 - - 99 - 0007 -2 5428 5377 4397 1029 978 7.04 99 - - - - 99 - -2 5866 5824 5687 177 135 0.21 0 - - 0 - 0 99 0008 +3 5544 5610 5897 351 285 -0.89 99 - - 99 - - - +1 5782 5809 5958 174 147 -6.42 0 0 - - - - 99 0009 -3 6176 6131 5664 510 465 10.43 99 - - - - - 99 0010 +1 5962 5977 6183 219 204 -0.83 99 99 0 - - - - 0011 +2 5954 6071 6250 294 177 -3.75 99 - 99 - - - - 0012 -2 6373 6361 6128 243 231 6.96 99 - - - - 99 - 0013 -1 6693 6693 6442 249 249 -4.24 99 - - - 99 - - -3 6920 6812 6627 291 183 -9.75 0 - 99 - - - 0 -2 7129 7027 6860 267 165 -3.13 0 - 99 - - 0 - -2 7741 7723 7487 252 234 -0.81 0 - 99 - - 0 - 0014 +2 6500 6554 7804 1302 1248 11.47 99 - 99 - - - - 0015 +1 7783 7801 7941 156 138 -2.69 68 68 - - - 31 - 0016 -2 8017 7984 7742 273 240 -4.34 99 - - - - 99 - -2 8761 8317 8018 741 297 -1.53 0 - 99 - - 0 - 0017 +2 7862 7871 8839 975 966 11.77 99 - 99 - - - - -1 8850 8787 8620 228 165 -3.74 0 - 99 - 0 - - 0018 -3 9071 9056 8889 180 165 2.18 99 - - - - - 99 +1 8914 8926 9096 180 168 -0.83 0 0 0 - 99 - - +2 8918 9089 9307 387 216 1.44 0 - 0 - 99 - - 0019 -1 9351 9348 8923 426 423 12.53 99 - - - 99 - - 0020 +2 9308 9314 9532 222 216 0.51 99 - 99 - - - - 0021 -2 10120 9997 9332 786 663 8.52 99 - - - - 99 - +1 9982 10015 10290 306 273 1.42 0 0 - - 99 - - +2 10349 10511 10642 291 129 -4.06 0 0 0 - 99 - - +1 10291 10330 10653 360 321 -2.02 0 0 - - 99 - - +3 10536 10560 10709 171 147 -4.76 0 - - 0 99 - - -2 10759 10744 10592 165 150 -2.82 2 - - - 97 2 - +1 10669 10678 10818 147 138 -2.90 0 0 - - 99 - - -3 11033 11009 10812 219 195 -6.83 0 - - - 99 - 0 +2 10871 10931 11056 183 123 -2.09 0 13 0 - 86 - - +1 10819 10849 11076 255 225 3.04 1 1 - - 98 - - 0022 -1 11214 11205 9994 1218 1209 5.36 99 - - - 99 - - +3 11190 11190 11339 147 147 0.95 0 - 0 0 - 99 - -1 11583 11583 11446 135 135 -5.84 0 - 0 - 0 99 - 0023 +2 11057 11141 11806 747 663 1.26 99 - 99 - - - - -1 12036 11997 11866 168 129 -4.48 0 - 2 - 0 97 - +2 11870 11915 12127 255 210 -0.68 0 - 0 - - 99 - 0024 -2 12178 12163 11186 990 975 7.98 99 - - - - 99 - 0025 +1 12166 12166 12297 129 129 -2.22 63 63 36 - - - - +1 12370 12376 12501 129 123 -0.59 0 0 - - 99 - - +2 12512 12548 12670 156 120 -1.57 0 0 0 - 99 - - +1 12502 12523 12723 219 198 -2.84 0 0 - - 99 - - -3 12857 12743 12618 237 123 -14.08 0 - - - 99 - 0 +1 12730 12763 12918 186 153 -4.00 0 0 - - 99 - - 0026 -1 13245 13239 12169 1074 1068 8.80 99 - - - 99 - - 0027 +3 13083 13242 13508 423 264 -4.74 99 - - 99 - - - +1 13264 13360 13524 258 162 -1.80 0 0 - - - - 99 +3 13593 13638 13886 291 246 -1.79 0 - 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