Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSJG010000031.715.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSJG010000031.715.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSJG010000031.715.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSJG010000031.715.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 44 196 192 150 -6.78 0 - 0 0 - - 99 +1 136 193 333 195 138 3.86 0 0 - 0 0 - 99 +3 3 126 338 333 210 0.27 0 - - 0 - - 99 +1 334 574 705 369 129 1.97 0 0 0 - 0 - 99 +1 706 724 864 156 138 3.92 0 0 - 0 0 - 99 -1 882 819 463 417 354 -3.87 0 - - - 0 - 99 +1 958 1030 1182 222 150 -4.02 0 0 - - 0 - 99 -1 1200 1167 919 279 246 -8.81 0 - - - 0 - 99 +2 1115 1148 1300 183 150 2.35 0 - 0 - - 99 0 0001 -2 1327 1279 1109 216 168 4.27 99 - - - - 99 0 0002 -3 1334 1331 357 975 972 5.06 99 - - - - - 99 +3 1305 1332 1478 171 144 -7.81 0 - - 0 99 - - +1 1339 1468 1608 267 138 -2.56 0 0 - - 99 0 - -2 1777 1630 1451 324 177 -9.25 0 - - - 99 0 - 0003 +2 1808 1907 2032 222 123 0.59 31 - 31 - 68 0 - +1 2266 2317 2559 291 240 0.32 0 0 - - 99 - - +2 2456 2477 2683 225 204 -4.80 0 - 0 - 99 0 - 0004 -1 2823 2721 1276 1545 1443 6.22 99 - - - 99 - - +1 2560 3076 3201 639 123 -0.66 0 0 - - - - 99 -2 3397 3385 3221 174 162 -0.85 0 - - - - 0 99 +2 3434 3584 3727 291 141 -6.00 0 - 0 - - - 99 -2 3784 3784 3659 123 123 -2.35 0 - - 0 - 0 99 0005 -3 4100 4055 2736 1362 1317 11.05 99 - - - - - 99 0006 +3 3927 3933 4196 267 261 1.05 99 - - 99 - - - -2 4321 4270 4142 177 126 -1.80 0 99 - - 0 0 - 0007 -1 4539 4377 4093 444 282 0.48 99 - - - 99 - - +2 4412 4436 4558 144 120 -4.01 0 99 0 - - - - 0008 +1 4132 4150 4752 618 600 4.40 99 99 - - - - - 0009 -3 4856 4820 4698 156 120 4.85 64 - 0 35 - - 64 +2 4658 4700 4987 327 285 -6.39 0 - 0 99 - - - -3 5075 5024 4857 216 165 -5.79 0 - - 99 - - 0 0010 +3 4635 4677 5147 510 468 5.05 99 - - 99 - - - 0011 +1 5116 5122 5271 153 147 2.43 99 99 - - 0 - - -1 5400 5253 5119 279 132 -1.28 0 99 - - 0 - - +1 5272 5398 5523 249 123 -5.83 0 0 - - - - 99 +3 5454 5478 5609 153 129 -2.28 0 - - 0 0 - 99 -1 5622 5577 5401 219 174 -8.35 0 - - - 0 - 99 +1 5644 5662 5784 138 120 2.92 0 0 - - 0 - 99 -2 5971 5950 5822 147 126 -7.11 0 - - 0 0 0 99 +3 5778 5847 5978 198 129 2.08 0 - - 0 0 - 99 -1 5982 5790 5623 357 165 -4.36 0 - - - 0 - 99 -1 6225 6210 5983 240 225 -11.73 0 - - - 0 - 99 +1 6121 6124 6267 144 141 -2.22 0 0 - - - - 99 -2 6277 6277 6155 120 120 -9.08 0 - - 0 - 0 99 +3 6306 6309 6551 243 240 -2.47 0 - - 0 0 - 99 0012 -3 6575 6527 5160 1413 1365 9.05 99 - - - - - 99 -1 6621 6555 6298 321 255 -5.14 0 - - - 0 - 99 +3 6636 6720 6866 228 144 -11.92 0 1 - 0 98 - - +1 6646 6727 7290 642 561 3.00 0 0 - - 99 - - -3 7391 7370 7230 159 138 -2.51 0 - 0 - 99 - 0 +2 6812 6884 7474 660 588 -0.05 0 - 0 - 99 - - +1 7564 7642 8055 489 411 3.89 0 0 - - 99 - - +2 7871 7934 8203 330 267 -0.41 0 - 0 - 99 - - +3 8079 8112 8267 186 153 -2.57 0 - - 0 99 - - -3 8408 8408 8241 165 165 -4.09 0 - - - 99 - 0 +2 8366 8372 8509 141 135 -3.57 0 0 0 - 99 - - +2 8510 8510 8659 147 147 -2.18 0 0 0 - 99 - - +2 8660 8663 8830 168 165 -2.90 0 0 0 - 99 - - +1 8356 8722 8853 495 129 1.71 3 3 - - 96 - 0 -3 8885 8849 8667 216 180 -1.99 0 0 - - 99 - 0 +3 8964 8976 9101 135 123 -9.54 0 - - 0 99 - - +1 9079 9106 9240 159 132 -0.78 0 0 - - 99 - - 0013 -1 9288 9267 6649 2637 2616 7.75 99 - - - 99 - - 0014 +3 9321 9336 9482 159 144 0.50 99 - - 99 - 0 0 +3 9483 9501 9650 165 147 -5.38 0 - 99 0 0 0 - -1 9681 9681 9493 186 186 -3.92 0 - 99 - 0 0 - 0015 -2 9709 9607 9251 456 354 -2.96 99 - - - - 99 - -2 9922 9883 9710 210 171 2.35 0 - 99 - - 0 - -3 10043 9926 9789 252 135 -7.36 0 - 99 - - 0 0 -2 10237 10114 9923 312 189 1.51 0 - 99 - - 0 - 0016 +2 9380 9401 10366 984 963 10.32 99 - 99 - - - - -2 10618 10615 10460 156 153 -0.21 0 - 99 - - 0 - 0017 +2 10367 10373 10729 360 354 8.20 99 - 99 - - - - 0018 -2 10810 10783 10619 189 162 -2.90 99 - - - - 99 - +3 10749 10947 11108 357 159 -1.21 0 0 - 0 - - 99 +1 10882 11035 11199 315 162 -0.97 0 0 - - - - 99 +2 11105 11117 11263 156 144 -11.49 0 - 0 0 0 - 99 +1 11200 11236 11364 162 126 0.29 0 0 - 0 - - 99 +3 11109 11316 11450 339 132 3.40 0 - - 0 - - 99 0019 -3 11456 11441 10794 660 645 9.97 99 - - - - - 99 +1 11749 11755 11910 159 153 -0.12 0 0 - - 99 - - +2 11894 11954 12088 192 132 1.94 0 - 0 - 99 0 - +2 12089 12095 12223 132 126 0.89 0 0 0 - 99 - - +1 12019 12085 12498 477 411 5.66 0 0 - - 99 - - 0020 -1 12528 12516 11476 1050 1038 12.08 99 - 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99 - - 0 - 0028 -2 15724 15649 15041 681 606 0.28 99 - - - - 99 - 0029 +1 15595 15610 15759 162 147 -4.04 99 99 - - - - - 0030 +3 15624 15675 15944 318 267 1.89 99 - - 99 - - - +1 16057 16096 16230 171 132 4.03 4 4 - - 0 - 95 +3 16161 16266 16394 231 126 -10.39 0 - - 0 0 - 99 -1 16584 16563 16402 180 159 -7.17 0 - - 0 0 - 99 +3 16395 16410 16664 267 252 1.19 0 - - 0 - - 99 +1 16507 16522 16779 270 255 -3.64 0 0 - - - - 99 +1 16825 16864 17007 180 141 -7.15 0 0 - 0 - - 99 -1 17040 17016 16876 162 138 -7.70 0 - - 0 0 - 99 +3 16665 16683 17225 558 540 1.63 0 - - 0 - - 99 +1 17008 17053 17262 252 207 -0.95 0 0 - - - - 99 -2 17377 17353 17201 174 150 -11.88 0 - - - - 0 99 +3 17292 17463 17612 318 147 -0.86 0 - - 0 - - 99 0031 -3 17615 17594 15690 1923 1902 10.27 99 - - - - - 99 0032 -2 17782 17764 17591 189 171 -2.13 99 - - - - 99 - 0033 -3 17873 17786 17616 255 168 -0.13 94 - - - - 5 94 0034 +3 17637 17640 17951 312 309 8.88 99 - - 99 - - - -2 17956 17947 17810 144 135 -1.01 0 - - 99 - 0 - 0035 +2 17939 17948 18292 351 342 8.58 99 - 99 - - - - +1 18298 18331 18564 264 231 -3.63 0 0 99 - - - - -1 18783 18705 18565 216 138 1.22 0 - 99 - 0 - - -2 18931 18922 18689 240 231 -0.29 0 - 99 - - 0 - +1 18853 18952 19131 276 177 -7.90 0 0 99 - - - - 0036 +2 18293 18317 19333 1038 1014 10.24 99 - 99 - - - - +3 19200 19218 19346 144 126 -6.07 0 - - 0 0 99 - 0037 -1 19593 19482 19150 441 330 -1.23 99 - - - 99 - - +3 19701 19818 19967 264 147 -0.46 0 - - 0 - - 99 0038 -3 20252 20231 19320 930 909 10.42 99 - - - - - 99