Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSFI010000151.643.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSFI010000151.643.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSFI010000151.643.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSFI010000151.643.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 179 161 12 165 147 -2.09 0 - - 99 - - 0 +1 247 271 423 174 150 -13.38 0 0 - 99 - - - -2 541 511 362 177 147 -4.06 0 - - 99 - 0 - +2 584 608 733 147 123 -6.84 0 - 0 99 - - 0 -2 766 760 617 147 141 -7.50 0 - - 99 - 0 0 -3 959 941 399 558 540 2.28 0 - - 99 - - 0 -3 1229 1214 960 267 252 0.01 0 - - 99 - - 0 -3 1463 1358 1230 231 126 -8.93 0 - 0 99 - - 0 -2 1567 1528 1394 171 132 1.94 1 - - 98 - 1 - -3 1781 1745 1623 156 120 1.23 0 - - 99 - - 0 -1 1797 1752 1627 168 123 -12.67 0 - - 99 0 - 0 0001 +3 9 30 1934 1923 1902 10.84 99 - - 99 - - - 0002 -3 2024 1976 1782 240 192 -2.21 99 - - - - - 99 0003 -3 2489 2483 2025 462 456 8.32 99 - - 0 - - 99 0004 +3 2016 2034 2585 567 549 1.06 99 - - 99 - - - -1 2589 2580 2449 138 129 -4.04 0 36 - 63 0 - - 0005 +1 2425 2461 2703 276 240 -4.92 99 99 - - - - - +2 2504 2678 2881 375 201 -0.28 0 - 0 - - 99 - +2 2957 3026 3160 201 132 -0.38 0 - 0 0 - 99 - +3 2910 2964 3170 258 204 -2.61 0 - - 0 - 99 - 0006 -2 3181 3151 2486 693 663 10.21 99 - - - - 99 - +1 3178 3193 3432 252 237 -1.93 0 0 0 - 99 - - +2 3161 3284 3694 531 408 4.33 0 - 0 - 99 - - 0007 -1 3855 3843 3157 696 684 12.05 99 - - - 99 - - 0008 +2 3695 3710 3871 174 159 2.32 99 - 99 - - 0 - -3 4127 4124 3978 147 144 4.59 1 0 - - 98 - 1 +1 3973 4000 4131 156 129 5.02 1 1 - - 98 - 0 +1 4216 4285 4479 261 192 0.56 0 0 - - 99 - - +3 4467 4515 4661 192 144 -3.57 0 - - 0 99 - - +1 4534 4723 4914 378 189 -1.16 0 0 0 - 99 - - +2 4604 4808 4987 381 177 0.43 0 - 0 - 99 - - -3 5018 4994 4827 189 165 -2.42 0 - - - 99 - 0 +3 4890 4926 5060 168 132 -2.52 0 0 - 0 99 - - +2 4988 5000 5176 186 174 -1.72 0 0 0 - 99 - - -2 5326 5314 5180 144 132 -3.26 0 0 - - 99 0 - +1 4915 5155 5349 432 192 -0.46 0 0 - - 99 - - 0009 -1 5376 5334 3973 1401 1359 7.07 99 - - - 99 - - 0010 +3 5502 5505 5630 126 123 0.10 76 23 - 76 - - - 0011 -1 5829 5787 5656 171 129 5.27 99 - - - 99 - - 0012 -1 5976 5970 5836 138 132 2.61 88 - - - 88 - 11 0013 -3 6062 5972 5790 270 180 3.67 99 - - - - - 99 -1 6486 6483 6334 150 147 -5.23 0 - - 99 0 - - -3 6500 6470 6339 159 129 1.46 0 - - 99 0 - 0 0014 +3 6009 6042 6689 678 645 8.76 99 - - 99 - - - 0015 -2 6718 6712 6542 174 168 1.96 99 - - - - 99 - -1 7026 6858 6709 315 147 3.59 0 99 - - 0 - - +2 6830 6887 7042 210 153 -7.98 0 99 0 - - - - -3 7220 7148 6918 300 228 0.36 0 99 - 0 - - 0 -1 7284 7254 7027 255 225 -0.72 0 99 - 0 0 - - -2 7378 7378 7241 135 135 -3.94 0 99 - - - 0 - +3 7275 7341 7481 204 138 -5.40 0 99 - 0 - - - 0016 +1 6703 6721 7578 873 855 9.58 99 99 - - - - - -2 7711 7507 7379 330 126 -3.56 0 99 - - - 0 - -3 8018 8012 7884 132 126 1.66 0 99 - - 0 - 0 -1 8064 8022 7609 453 411 4.27 0 99 - - 0 - - -3 8213 8153 8019 192 132 2.39 0 99 - 0 - - 0 0017 +1 7579 7591 8631 1050 1038 11.69 99 99 - - - - - -1 8907 8895 8743 162 150 1.47 0 - 99 - 0 0 - +1 8761 8791 9006 243 213 -9.24 0 0 99 - - 0 - -2 9007 8791 8657 348 132 3.96 0 - 99 - - 0 - -1 9225 9072 8908 315 162 -3.49 0 - 99 - 0 - - 0018 +2 8651 8666 9313 660 645 10.25 99 - 99 - - - - -2 9391 9220 9008 381 210 -2.11 0 - 99 - 0 0 - +3 9537 9552 9683 144 129 -1.22 0 0 - 0 - 99 0 0019 -2 9886 9880 9524 360 354 8.70 99 - - - - 99 - +2 10016 10139 10330 312 189 -0.28 0 - 0 - - 99 - +3 10257 10290 10421 162 129 0.97 0 0 - 0 - 99 - +1 10210 10327 10464 252 135 -8.71 0 0 - - 0 99 - -1 10488 10440 10315 171 123 -8.87 0 0 - - 0 99 - +3 10572 10638 10760 186 120 0.62 0 - - 0 0 99 0 -1 10770 10752 10603 165 147 -3.90 0 - - 0 0 99 - 0020 -2 10873 10852 9887 984 963 10.84 99 - - - - 99 - 0021 -1 10932 10917 10771 159 144 0.35 99 0 0 - 99 - - 0022 +2 10652 10853 11002 348 147 -3.28 99 - 99 - - - - -1 11289 11277 11152 135 123 -11.02 0 - - 99 0 - - +1 11341 11374 11586 243 210 -1.61 0 0 - 99 - - 0 -2 11593 11590 11423 168 165 -0.17 0 - - 99 - 0 0 -2 11743 11743 11594 147 147 -1.79 0 - - 99 - 0 0 -2 11887 11881 11744 141 135 -4.11 0 - - 92 - 0 7 -3 11897 11855 11274 621 579 1.52 0 - - 99 - - 0 +1 11845 11845 12012 165 165 -7.08 0 0 - 99 - - - -1 12174 12108 11986 186 120 -6.17 0 - - 99 0 - - -2 12382 12319 12050 330 267 0.89 0 - - 99 - 0 - -3 12713 12611 12198 513 411 4.01 0 - - 99 - - 0 +2 12557 12632 12757 198 123 -13.18 0 - 0 99 0 - - -1 12891 12762 12550 339 210 -5.71 0 - - 99 0 - - +1 12862 12883 13023 159 138 -2.11 0 0 - 99 - 0 - -3 13415 13115 12963 450 150 1.59 0 - - 99 - 0 0 -2 13441 13369 12779 660 588 1.51 0 - - 99 - 0 - 0023 +3 10965 10986 13604 2637 2616 8.27 99 - - 99 - - - 0024 -2 13825 13756 13628 195 126 -0.56 99 - - - - 99 - 0025 -3 13970 13943 13665 303 276 -1.08 99 - - - - - 99 -2 14131 14128 13985 144 141 1.01 0 0 - 99 - 0 0 +1 13975 13993 14139 162 144 -12.74 0 0 - 99 - - 0 +2 14027 14042 14191 162 147 -12.24 0 - 0 99 - - - +1 14281 14302 14430 147 126 -9.34 0 0 0 99 - - 0 -3 14495 14405 14277 216 126 2.56 0 0 0 99 - - 0 -2 14608 14590 14468 138 120 4.78 0 - 0 99 - 0 - +2 14270 14618 14851 579 231 -5.81 0 - 0 99 - - - -2 14980 14854 14729 249 123 -2.45 0 - - 99 - 0 - 0026 +3 13677 13725 15089 1410 1362 9.12 99 - - 99 - - - +2 14852 14999 15133 279 132 -0.45 0 - 0 - - 99 - 0027 -2 15136 15130 14981 153 147 4.64 99 - 0 - - 99 - +3 15177 15228 15401 222 171 -6.33 0 - - 0 - - 99 +3 15402 15432 15554 150 120 1.80 0 - - 0 - - 99 -1 15726 15660 15445 279 213 -1.68 0 - - - 0 - 99 +3 15705 15876 16067 360 189 2.05 0 - - 0 - - 99 +2 15932 15983 16111 177 126 0.08 0 - 0 - - - 99 0028 -3 16121 16103 15105 1014 996 8.72 99 - - - - - 99 -1 16329 16320 16057 270 261 1.58 0 99 - - 0 - - +2 16469 16469 16594 123 123 -3.91 0 99 0 - 0 - - -2 16819 16669 16526 291 141 -9.15 0 99 - - - 0 - +2 16856 16880 17032 174 150 0.96 0 99 0 - - - - -3 17357 17177 17052 303 123 -2.81 0 99 - - - - 0 -1 17397 17385 17257 138 126 -3.70 0 99 - - 0 - - 0029 +1 16042 16171 17427 1383 1254 11.09 99 99 - - - - - -3 17801 17756 17622 177 132 -9.97 0 - 99 - - 0 0 0030 -2 17845 17737 17390 453 345 4.54 99 - - - - 99 - +3 17742 17760 17918 174 156 -9.82 0 - 99 0 0 - - -1 18186 17820 17665 519 153 -3.76 0 - 99 - 0 0 - 0031 +2 17420 17456 18346 924 888 12.56 99 - 99 - - - - -2 18370 18310 18134 234 174 1.31 0 - 99 - - 0 - -1 18861 18678 18187 672 489 1.73 0 99 - - 0 - - -2 18910 18865 18737 171 126 -11.15 0 99 - 0 0 0 - +3 18723 18792 18992 267 198 -6.62 0 99 - 0 - - - -3 19319 19226 18975 342 249 -2.58 0 99 - - - - 0 +3 19350 19497 19676 324 177 -9.06 0 99 - 0 0 - - -1 19788 19659 19492 294 165 -0.26 0 99 - 0 0 - - 0032 +1 18142 18361 19851 1707 1488 10.41 99 99 - - - - - +2 19793 19796 20176 381 378 -5.26 0 - 0 99 - - - -3 20195 20162 19827 366 333 2.10 0 - 0 99 - - 0 -2 20251 20068 19883 366 183 -0.70 0 - 0 99 - 0 0