Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSFI010000031.619.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSFI010000031.619.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSFI010000031.619.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSFI010000031.619.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 383 272 111 270 159 -2.34 0 - - 99 0 - 0 0001 +3 3 18 413 408 393 3.16 99 - - 99 0 - - +1 475 508 630 153 120 -3.43 0 0 99 - - 0 - -2 856 607 323 531 282 -1.72 0 - 99 - 0 0 - 0002 +2 275 371 934 657 561 7.63 99 - 99 - - - - 0003 +3 759 774 986 225 210 -5.70 99 - - 99 - - - 0004 +2 1190 1226 1366 174 138 -3.48 99 - 99 - - - - +3 1314 1320 1475 159 153 0.04 0 - - 0 - 99 - +2 1463 1475 1636 171 159 0.51 0 0 0 - - 99 - +1 1357 1498 1812 453 312 -7.91 0 0 - - - 99 - +3 1899 1899 2060 159 159 -0.22 0 - 0 0 - 99 - +1 1918 1933 2076 156 141 -8.67 0 0 0 - - 99 - +3 2124 2157 2345 219 186 1.03 0 - 0 0 - 99 - +3 2349 2370 2510 159 138 0.26 0 - 0 0 - 99 - -1 2634 2535 2401 231 132 -4.49 0 - 0 - 0 99 - 0005 +2 1832 2135 2755 921 618 -2.40 0 - 0 - - 99 - +1 2743 2770 2928 183 156 -9.55 0 0 0 - - 99 - +2 2756 2768 2983 225 213 -3.74 0 - 0 - - 99 - -1 3126 3015 2788 336 225 -7.75 0 - - - 0 99 - +1 3010 3076 3204 192 126 -10.31 0 0 0 - - 99 0 +2 2984 3101 3253 267 150 -1.09 0 - 0 - - 99 0 +2 3254 3284 3430 174 144 1.18 0 - 0 0 - 99 - +3 3288 3300 3434 144 132 -0.58 0 - - 0 - 99 - +3 3435 3489 3668 231 177 -2.57 0 - - 0 - 99 - -1 3759 3759 3628 129 129 -10.21 0 0 - - 0 99 - +1 3586 3592 3801 213 207 -8.68 0 0 - - - 99 - -3 4088 4085 3963 123 120 -9.78 0 - 0 - - 99 0 -1 4167 4137 4015 150 120 -6.43 0 - 0 - 0 99 - -3 4295 4292 4089 204 201 -2.09 0 - 0 0 - 99 0 +2 3728 4046 4336 606 288 -4.65 0 - 0 - - 99 - 0006 -2 4366 4363 1250 3114 3111 14.27 99 - - - - 99 - +3 4074 4095 4370 294 273 2.11 0 - - 0 - 99 - +2 4352 4502 4744 390 240 -3.50 0 - 0 - - 99 - +2 4745 4802 5071 324 267 0.62 0 - 0 - - 99 - +3 4926 4962 5096 168 132 1.59 0 - - 0 - 99 - +2 5078 5117 5260 180 141 -2.65 0 - 0 - - 99 - +1 5230 5257 5424 192 165 -9.34 0 0 - - - 99 - 0007 -2 5428 5377 4403 1023 972 8.86 99 - - - - 99 - +2 5783 5810 5959 174 147 -5.35 0 - 0 - 99 - - 0008 -1 6177 6132 5665 510 465 6.08 99 - - - 99 - - 0009 +2 5963 5978 6184 219 204 -3.09 95 - 95 4 - - - 0010 +3 5955 6057 6251 294 192 -1.68 99 - - 99 - - - 0011 -3 6374 6362 6129 243 231 8.09 99 - - - - - 99 0012 -2 6694 6694 6443 249 249 -4.32 99 - - - - 99 - +2 6632 6641 6907 273 264 -7.31 0 - 0 99 0 - - -1 6921 6813 6628 291 183 -7.93 0 - 0 99 0 - - -3 7130 7028 6861 267 165 -0.96 0 - - 99 - - 0 -3 7742 7724 7488 252 234 0.01 0 - - 99 - - 0 0013 +3 6513 6555 7805 1290 1248 10.47 99 - - 99 - - - 0014 +2 7784 7802 7942 156 138 -6.06 73 - 73 - - - 26 0015 -3 8018 7985 7743 273 240 -6.80 99 - - - - - 99 -3 8762 8318 8019 741 297 -0.55 0 - - 99 - - 0 0016 +3 7863 7872 8840 975 966 8.26 99 - - 99 - - - +2 8918 9116 9307 387 189 0.10 0 - 0 - 99 - - 0017 -1 9351 9321 8923 426 396 10.24 99 - - - 99 - - +2 9308 9410 9532 222 120 1.62 0 - 0 - - 99 - +2 9533 9731 9865 330 132 -3.28 0 - 0 - - 99 - 0018 -2 10120 9997 9332 786 663 11.32 99 - - - - 99 - +1 9982 10108 10470 486 360 -0.95 0 0 - - 99 - - +2 10349 10511 10642 291 129 -2.46 0 0 0 0 99 - - +1 10471 10489 10653 180 162 -4.51 0 0 - - 99 - - +3 10515 10560 10709 192 147 -8.02 0 - - 0 99 - - -2 10759 10744 10592 165 150 -6.02 0 - - - 99 0 - +1 10669 10678 10818 147 138 -4.78 0 0 - - 99 - - -3 11009 11009 10812 195 195 -7.03 0 - - - 99 - 0 +2 10871 10880 11056 183 174 0.81 0 0 0 - 99 - - +1 10819 10921 11076 255 153 1.84 0 0 - - 99 - - 0019 -1 11184 11148 9994 1188 1152 11.81 99 - - - 99 - - +2 11057 11063 11188 129 123 -0.02 0 - 0 - 99 - - +2 11189 11189 11338 147 147 0.17 0 0 0 - 99 - - +1 11161 11194 11793 630 597 -1.23 0 0 - - 99 - - +1 11869 11956 12126 255 168 -1.42 0 0 - - 99 - - 0020 -1 12177 12162 11185 990 975 13.63 99 - - - 99 - - 0021 +3 12165 12165 12368 201 201 -0.33 99 - - 99 - - - +1 12511 12547 12669 156 120 -0.83 0 0 - 0 - - 99 +3 12492 12522 12722 228 198 -0.93 0 - - 0 - - 99 -2 12856 12844 12710 144 132 -12.96 0 - - - - 0 99 +3 12729 12852 13097 366 243 -3.55 0 - - 0 - - 99 0022 -3 13277 13238 12168 1107 1068 10.88 99 - - - - - 99 +2 13265 13295 13447 180 150 -2.54 0 0 0 - 99 - - +1 13219 13324 13509 288 183 -2.55 0 0 - - 99 - - 0023 -1 13917 13911 13261 654 648 9.79 99 - - - 99 - - 0024 +2 13793 13850 13996 201 144 -0.92 99 - 99 - - - - 0025 -2 14071 14044 13880 189 162 -3.11 81 - - 18 - 81 - 0026 +3 13884 13884 14075 189 189 -3.56 19 - - 19 - 80 - 0027 +1 14011 14011 14268 255 255 -1.89 99 99 - - - - - 0028 -1 14346 14340 14218 126 120 1.39 97 - - 2 97 - - -1 14541 14484 14347 192 135 -3.54 0 - - 99 0 0 - +1 14434 14455 14586 150 129 -12.60 0 0 - 99 - - 0 -3 14873 14513 14382 489 129 -3.85 0 - - 99 0 0 0 +1 14725 14734 14877 150 141 -5.29 0 0 0 99 0 - 0 -2 14959 14956 14810 147 144 -0.30 0 - 0 99 0 0 - +2 14696 14777 14986 288 207 -8.88 0 - 0 99 0 - - -1 15078 14718 14542 534 174 -11.18 0 - - 99 0 - 0 -2 15112 15112 14966 144 144 -6.75 0 - - 99 - 0 - 0029 +3 14133 14316 15515 1380 1197 9.73 99 - - 99 - - - -3 15521 15488 15321 198 165 -2.25 0 - - 99 - 0 0 -2 15553 15466 15263 288 201 0.29 0 - - 99 - 0 - 0030 +1 15499 15502 15663 162 159 -0.64 99 99 - - - - - 0031 -2 15700 15682 15554 144 126 3.38 97 - 2 - - 97 - 0032 +2 15548 15620 15874 324 252 0.06 99 - 99 - - - - 0033 -2 16108 16018 15836 270 180 -6.53 99 - - - - 99 - -2 16252 16237 16109 141 126 -4.78 0 - - 99 - 0 0 +1 16315 16327 16467 150 138 -2.95 0 0 - 99 - - 0 0034 +3 15915 15927 16604 687 675 13.82 99 - - 99 - - - -2 16771 16489 16361 408 126 2.34 0 - - 99 - 0 0 +2 16937 16961 17167 228 204 -9.65 0 - 0 99 - - 0 0035 -3 17249 17177 16068 1179 1107 -2.59 0 - - 99 - - 0 -2 17782 17722 17585 195 135 2.24 0 - - 99 - 0 0 -1 17910 17889 17650 258 237 -5.27 0 - - 99 0 - 0 +2 17696 17765 17929 231 162 -6.90 0 - 0 99 - - 0 -2 18067 17995 17825 240 168 3.57 0 - - 99 - 0 0 -2 18346 18313 18173 171 138 3.32 0 - - 99 - 0 0 0036 -3 18392 18392 17250 1140 1140 -1.68 0 - - 99 - - 0 -2 18727 18718 18590 135 126 -6.91 0 - - 99 - 0 - 0037 +3 16611 16617 18992 2379 2373 10.47 99 - - 99 - - - -2 19234 18862 18728 504 132 2.15 0 - - 99 0 0 - -1 19434 19428 19297 135 129 1.21 0 - 99 - 0 0 - -2 19546 19531 19271 273 258 -1.33 0 - 99 - - 0 - +3 19413 19458 19580 165 120 -4.84 0 - 99 0 - - - -1 19875 19842 19660 213 180 0.50 0 - 99 - 0 0 - 0038 +2 18974 18998 19933 957 933 11.09 99 - 99 - - - - -2 19978 19918 19547 429 369 -1.95 0 - 99 - - 0 - 0039 +3 19905 19968 20108 201 138 -1.04 99 - - 99 - - - -2 20395 20308 20171 222 135 -4.31 0 - - - - 0 99 +3 20289 20322 20465 174 141 -3.97 0 - - 0 - - 99 -2 20680 20668 20537 141 129 -8.63 0 - - - - 0 99 -1 20823 20736 20557 264 177 -7.66 0 - - - 0 - 99 -2 20827 20827 20681 144 144 -5.58 0 0 - - 0 0 99 +1 20638 20683 20841 201 156 -6.11 0 0 - - - - 99 0040 -3 20939 20930 20022 915 906 7.20 99 - - - - - 99 0041 +1 20842 20842 20985 141 141 1.49 99 99 - - - - - 0042 -1 21141 20997 20866 273 129 -3.23 99 - - - 99 - - 0043 -3 21146 21119 20955 189 162 12.95 99 - - - 0 - 99