Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSEI010000391.557.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSEI010000391.557.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSEI010000391.557.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSEI010000391.557.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 177 159 10 165 147 -2.70 0 99 - - 0 - - +2 245 269 421 174 150 -13.38 0 99 0 - - - - -3 539 509 360 177 147 -5.09 0 99 - - - - 0 +3 582 606 731 147 123 -5.90 0 99 - 0 0 - - -3 764 758 615 147 141 -7.36 0 99 - - 0 - 0 -1 957 939 397 558 540 2.47 0 99 - - 0 - - -1 1227 1212 958 267 252 0.37 0 99 - - 0 - - -1 1461 1356 1228 231 126 -9.14 0 99 - 0 0 - - -3 1565 1526 1392 171 132 1.95 0 99 - - - - 0 -1 1779 1743 1621 156 120 1.01 0 99 - - 0 - - -2 1795 1750 1625 168 123 -13.14 0 99 - - 0 0 - 0001 +1 7 28 1932 1923 1902 10.94 99 99 - - - - - 0002 -1 2022 1974 1780 240 192 -1.89 99 - - - 99 - - 0003 -1 2487 2481 2023 462 456 8.77 99 0 - - 99 - - 0004 +1 2014 2032 2583 567 549 0.97 99 99 - - - - - -2 2587 2578 2447 138 129 -4.71 0 57 42 - - 0 - 0005 +2 2423 2459 2701 276 240 -4.40 99 - 99 - - - - +3 2502 2676 2879 375 201 -0.14 0 - - 0 - - 99 +3 2955 3024 3158 201 132 -1.32 0 0 - 0 - - 99 +1 2908 2962 3168 258 204 -2.16 0 0 - - - - 99 0006 -3 3179 3149 2484 693 663 10.06 99 - - - - - 99 +2 3176 3191 3430 252 237 -1.74 0 - 0 0 - 99 - +3 3159 3282 3692 531 408 3.90 0 - - 0 - 99 - 0007 -2 3853 3841 3155 696 684 11.52 99 - - - - 99 - 0008 +3 3693 3708 3869 174 159 3.47 99 - - 99 - - 0 -1 4125 4122 3976 147 144 3.89 0 - 0 - 0 99 - +2 3971 3998 4129 156 129 4.28 0 - 0 - 0 99 - +2 4214 4283 4477 261 192 0.00 0 - 0 - - 99 - +1 4465 4513 4659 192 144 -3.30 0 0 - - - 99 - +2 4532 4721 4912 378 189 -1.19 0 - 0 0 - 99 - +3 4602 4806 4985 381 177 0.48 0 - - 0 - 99 - -1 5016 4992 4825 189 165 -2.55 0 - - - 0 99 - +1 4888 4924 5058 168 132 -2.50 0 0 0 - - 99 - +3 4986 4998 5174 186 174 -2.17 0 - 0 0 - 99 - -3 5324 5312 5178 144 132 -4.40 0 - 0 - - 99 0 +2 4913 5153 5347 432 192 -0.90 0 - 0 - - 99 - 0009 -2 5374 5302 3971 1401 1329 7.23 99 - - - - 99 - +1 5500 5503 5628 126 123 -2.00 6 6 93 - - - - 0010 -2 5827 5785 5654 171 129 5.68 99 - - - - 99 - 0011 -2 5974 5968 5834 138 132 1.51 69 - - - 30 69 - 0012 -1 6060 5970 5788 270 180 3.03 99 - - - 99 - - -1 6222 6207 6061 159 144 -0.36 0 99 - - 0 - - -2 6484 6481 6257 225 222 -0.74 0 99 - - - 0 - -1 6498 6468 6337 159 129 1.47 0 99 - - 0 0 - 0013 +1 6007 6052 6687 678 633 7.81 99 99 - - - - - 0014 -3 6716 6710 6540 174 168 0.51 99 - - - - - 99 -2 7024 6856 6707 315 147 3.17 0 - 99 - - 0 - +3 6828 6885 7040 210 153 -7.09 0 - 99 0 - - - -1 7218 7146 6916 300 228 0.36 0 0 99 - 0 - - -2 7282 7252 7025 255 225 -1.11 0 0 99 - - 0 - -3 7376 7376 7239 135 135 -4.46 0 - 99 - - - 0 +1 7273 7339 7479 204 138 -5.72 0 0 99 - - - - 0015 +2 6701 6719 7576 873 855 9.82 99 - 99 - - - - -3 7709 7505 7377 330 126 -3.50 0 - 99 - - - 0 -1 8016 8010 7882 132 126 1.04 0 - 99 - 0 0 - -2 8062 8020 7607 453 411 3.84 0 - 99 - - 0 - -1 8211 8151 8017 192 132 3.84 0 0 99 - 0 - - 0016 +2 7577 7589 8629 1050 1038 11.56 99 - 99 - - - - -2 8905 8893 8741 162 150 0.75 0 - - 99 - 0 0 +2 8759 8789 9004 243 213 -10.02 0 - 0 99 - - 0 -3 9005 8789 8655 348 132 4.04 0 - - 99 - - 0 -2 9223 9172 8906 315 264 -1.66 0 - - 99 - 0 - 0017 +3 8649 8664 9311 660 645 10.81 99 - - 99 - - - -3 9389 9158 9006 381 150 -2.96 0 - - 99 - 0 0 +1 9535 9550 9681 144 129 -1.68 0 0 0 - 0 - 99 0018 -3 9884 9869 9522 360 345 8.60 99 - - - - - 99 +3 10014 10137 10328 312 189 0.24 0 - - 0 - - 99 +1 10255 10288 10419 162 129 1.11 0 0 0 - - - 99 +2 10208 10325 10462 252 135 -8.33 0 - 0 - - 0 99 -2 10486 10438 10313 171 123 -8.70 0 - 0 - - 0 99 +1 10570 10636 10758 186 120 0.95 0 0 - - 0 0 99 -2 10768 10750 10601 165 147 -3.98 0 0 - - - 0 99 0019 -3 10871 10850 9885 984 963 10.74 99 - - - - - 99 0020 -2 10930 10930 10769 159 159 1.40 99 - - 0 - 99 - 0021 +3 10650 10851 11000 348 147 -2.90 99 - - 99 - - - -2 11287 11275 11150 135 123 -11.05 0 99 - - - 0 - +2 11339 11372 11584 243 210 -0.88 0 99 0 - 0 - - -3 11591 11588 11421 168 165 -1.01 0 99 - - 0 - 0 -3 11741 11741 11592 147 147 -1.03 0 99 - - 0 - 0 -3 11885 11879 11742 141 135 -4.66 0 98 - - 1 - 0 -1 11895 11529 11272 621 255 2.34 0 99 - - 0 - - +2 11843 11843 12010 165 165 -6.66 0 99 0 - - - - -2 12172 12106 11984 186 120 -5.46 0 99 - - - 0 - -3 12380 12317 12048 330 267 1.21 0 99 - 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- 0 - - 99 +1 15175 15226 15399 222 171 -5.17 0 0 - - 99 - - +1 15400 15430 15552 150 120 1.76 0 0 - - 99 - - -2 15724 15658 15443 279 213 -2.63 0 - - - 99 0 - +1 15703 15874 16065 360 189 2.06 0 0 - - 99 - - +3 15930 15981 16109 177 126 1.00 0 - - 0 99 - - 0027 -1 16119 16101 15103 1014 996 8.88 99 - - - 99 - - -2 16327 16318 16055 270 261 1.97 0 - 99 - - 0 - +3 16467 16467 16592 123 123 -3.75 0 - 99 0 - 0 - -3 16817 16667 16524 291 141 -9.76 0 - 99 - - - 0 +3 16854 16878 17030 174 150 0.68 0 - 99 0 - - - -1 17355 17175 17050 303 123 -3.64 0 - 99 - 0 - - -2 17395 17383 17255 138 126 -4.36 0 - 99 - - 0 - 0028 +2 16040 16169 17425 1383 1254 10.94 99 - 99 - - - - -1 17799 17754 17620 177 132 -9.44 0 - - 99 0 - 0 0029 -3 17843 17735 17388 453 345 3.60 99 - - - - - 99 +1 17740 17758 17916 174 156 -10.60 0 0 - 99 - 0 - -2 18184 17818 17663 519 153 -4.49 0 - - 99 - 0 0 0030 +3 17418 17454 18344 924 888 12.28 99 - - 99 - - - -3 18368 18308 18132 234 174 0.34 0 - - 99 - - 0 -2 18859 18676 18185 672 489 2.21 0 - 99 - - 0 - -3 18908 18863 18735 171 126 -10.64 0 0 99 - - 0 0 +1 18721 18790 18990 267 198 -6.56 0 0 99 - - - - -1 19317 19224 18973 342 249 -2.81 0 - 99 - 0 - - +1 19348 19495 19674 324 177 -7.91 0 0 99 - - 0 - -2 19786 19657 19490 294 165 0.48 0 0 99 - - 0 - 0031 +2 18140 18359 19849 1707 1488 10.14 99 - 99 - - - - +3 19791 19794 20174 381 378 -5.16 0 99 - 0 - - - -1 20193 20160 19825 366 333 2.87 0 99 - 0 0 - - -3 20252 20066 19881 369 183 -0.63 0 99 - 0 0 - 0