Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSEI010000161.537.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSEI010000161.537.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QSEI010000161.537.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSEI010000161.537.AOI_01 Sequence length = 18096 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -2 361 340 137 222 201 2.17 12 - - 87 - 12 - -3 428 407 252 174 153 -2.07 0 - - 99 - - 0 0002 +3 114 183 584 468 399 4.40 99 - - 99 - - - 0003 +2 1025 1034 1201 174 165 -0.79 20 79 20 - - - - 0004 -3 1277 1277 1140 135 135 3.53 24 75 - 0 - - 24 +3 1098 1182 1310 210 126 -9.68 0 99 - 0 - 0 - 0005 +2 1337 1406 1531 192 123 0.19 25 74 25 - - 0 - -1 1800 1797 1489 309 306 -0.18 0 99 - - 0 - - -3 2018 1769 1539 477 228 -0.35 0 99 - - 0 - 0 0006 -1 2340 2316 2188 150 126 0.51 13 86 - - 13 - - 0007 +2 2228 2231 2368 138 135 4.77 77 22 77 - - - - -3 2882 2882 2640 240 240 0.83 0 99 - - - - 0 +3 2739 2760 2891 150 129 -1.88 0 99 - 0 - - - -2 3016 3007 2876 138 129 -6.20 0 99 - - - 0 - -2 3229 3223 3080 147 141 -1.83 0 99 - - - 0 - 0008 +1 892 1084 3357 2463 2271 5.09 99 99 - - - - - +2 3668 3716 3877 207 159 -2.75 0 - 0 0 99 - - +3 3690 3747 3890 198 141 1.26 0 - - 0 99 - - 0009 -1 4020 3993 3475 543 516 7.51 99 - - - 99 - - 0010 -3 4370 4319 4167 201 150 0.55 99 - - - - - 99 -3 4898 4868 4716 180 150 -1.70 0 99 - - 0 - 0 0011 +1 4246 4252 4902 654 648 9.16 99 99 - - - - - -1 4944 4839 4654 288 183 -4.21 0 99 - - 0 - - -2 5434 5332 5066 366 264 -0.54 0 - 99 - - 0 - +3 5307 5319 5453 144 132 -11.26 0 - 99 0 - - - -1 5652 5616 5494 156 120 -1.48 0 - 99 - 0 0 - -2 5794 5641 5441 351 198 -0.93 0 - 99 - - 0 - 0012 +2 4886 4886 5995 1107 1107 9.08 99 - 99 - - - - 0013 -2 5998 5998 5795 201 201 0.36 99 - - - - 99 - -1 6294 6249 6037 255 210 0.90 0 99 - - 0 - - +2 6128 6167 6298 168 129 -4.33 0 99 0 - 0 - - -3 6974 6956 6825 147 129 0.89 0 99 - - 0 - 0 0014 +1 5986 6001 6978 990 975 12.68 99 99 - - - - - -1 7002 6771 6358 642 411 -0.22 0 99 - - 0 - - -3 7106 7100 6975 129 123 -0.27 0 99 - - - - 0 -3 7292 7283 7107 183 174 -0.99 0 99 - - 0 - 0 -1 7344 7314 7087 255 225 1.80 0 99 - - 0 - - +2 7154 7154 7351 195 195 -6.02 0 99 0 - - - - -1 7494 7485 7345 147 138 -3.36 0 99 - - 0 - - +3 7404 7419 7571 165 150 -3.16 0 99 - 0 - - - -2 7648 7582 7454 192 126 -3.57 0 99 - - - 0 - -1 7692 7674 7510 180 162 -4.34 0 99 - - 0 - - -3 7814 7652 7521 291 129 -4.48 0 99 - - 0 0 0 -1 7980 7833 7693 285 138 0.69 0 99 - - 0 - - 0015 +1 6979 7015 8118 1137 1101 10.31 99 99 - - - - - 0016 -2 8143 8143 7913 228 228 -3.07 99 - - - - 99 - 0017 +2 8072 8165 8830 756 663 10.07 99 - 99 - - - - -2 8854 8677 8549 303 126 0.80 0 - 99 - - 0 - 0018 +3 8811 8814 9239 426 423 13.45 99 - - 99 - - - -2 9244 9046 8855 387 189 0.99 0 - - 99 - 0 - +3 9312 9375 9542 228 165 -3.08 0 - - 0 - 99 - +2 9401 9845 10144 741 297 0.41 0 - 0 - - 99 - 0019 -2 10300 10291 9323 975 966 6.96 99 - - - - 99 - 0020 -3 10379 10361 10221 156 138 -0.90 76 - 23 - - - 76 0021 +2 10145 10178 10420 273 240 -2.62 99 - 99 - - - - +2 10421 10439 10675 252 234 0.24 0 - 0 - - 99 - +2 11033 11135 11302 267 165 -1.45 0 - 0 - - 99 - -3 11531 11522 11256 273 264 -5.37 0 0 - - - 99 0 +1 11242 11350 11535 291 183 -7.97 0 0 - - - 99 0 0022 -2 11650 11608 10358 1290 1248 9.51 99 - - - - 99 - 0023 +3 11469 11469 11720 249 249 -1.57 99 - - 99 - - - 0024 +2 11789 11801 12034 243 231 6.78 99 - 99 - - - - 0025 -2 12073 12061 11912 159 147 -4.03 99 - - - - 99 - 0026 -3 12200 12185 11979 219 204 0.13 99 - - - - - 99 -3 12380 12353 12204 174 147 -5.18 0 99 - - - - 0 0027 +1 11986 12031 12498 510 465 11.03 99 99 - - - - - -3 13085 13046 12903 180 141 -0.83 0 - - 99 - - 0 -2 13237 13210 13067 168 141 -0.58 0 - - 99 - 0 - -3 13406 13391 13092 312 297 0.70 0 - - 99 - - 0 0028 +3 12735 12786 13760 1023 972 8.48 99 - - 99 - - - -3 13811 13661 13419 390 240 -3.30 0 - - 99 - - 0 +2 13868 13871 14074 204 201 -2.15 0 - 0 99 - 0 0 -2 14089 14068 13793 294 273 1.08 0 - - 99 - 0 - +1 13996 14026 14148 150 120 -8.24 0 0 - 99 - - 0 +2 14075 14078 14200 123 120 -9.73 0 - 0 99 - - 0 -3 14435 14117 13827 606 288 -2.94 0 - - 99 - - 0 +1 14404 14404 14535 129 129 -8.91 0 0 - 99 0 - - -1 14577 14571 14368 207 201 -8.45 0 - - 99 0 - - -2 14689 14674 14495 192 177 -0.05 0 - - 99 - 0 - -2 14875 14863 14729 144 132 1.13 0 - - 99 - 0 - -3 14909 14879 14733 174 144 0.06 0 - - 99 - 0 0 -1 15153 15087 14959 192 126 -13.60 0 - 0 99 0 - 0 -3 15179 15062 14910 267 150 1.42 0 - 0 99 - - 0 +1 15037 15148 15375 336 225 -5.00 0 0 - 99 - - - -3 15407 15395 15180 225 213 -2.29 0 - - 99 - - 0 -1 15420 15393 15235 183 156 -9.68 0 - - 99 0 - 0 +1 15529 15628 15762 231 132 -4.33 0 0 - 99 - - 0 -2 16039 16006 15818 219 186 -1.94 0 - - 99 - 0 0 -1 16245 16230 16087 156 141 -11.02 0 - - 99 0 - 0 -2 16264 16249 16103 159 144 -0.08 0 - - 99 0 0 0 0029 -3 16331 16028 15408 921 618 -0.77 0 - - 99 - - 0 -3 16700 16688 16527 171 159 2.57 0 - - 99 0 - 0 -1 16806 16665 16351 453 312 -10.10 0 - - 99 0 - - -2 16849 16837 16688 159 147 -3.28 0 - - 99 - 0 - 0030 +3 13797 13800 16913 3114 3111 8.62 99 - - 99 - - - 0031 -3 16973 16937 16797 174 138 -3.35 99 - - - - - 99 0032 -2 17404 17389 17177 225 210 -5.42 99 - - - - 99 - +1 17539 17542 17751 210 207 0.42 0 0 - 0 - - 99 +3 17229 17604 17795 564 189 -2.19 0 - - 0 - - 99 0033 -3 18095 18092 17229 864 861 10.98 99 - - - - - 99