Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRUY010000171.383.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRUY010000171.383.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRUY010000171.383.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRUY010000171.383.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 624 621 412 210 207 -1.14 0 - 99 - 0 0 - 0001 +2 2 71 934 930 861 12.13 99 - 99 - - - - -2 934 559 368 564 189 -4.00 0 - 99 - - 0 - 0002 +3 759 774 986 225 210 -6.91 99 - - 99 - - - 0003 +2 1190 1226 1366 174 138 -5.21 99 - 99 - - - - +3 1314 1320 1475 159 153 -2.14 0 - - 0 - 99 - +2 1463 1475 1636 171 159 0.28 0 0 0 - - 99 - +1 1357 1498 1812 453 312 -10.30 0 0 - - - 99 - +3 1899 1914 2060 159 144 -1.44 0 0 0 0 - 99 - +1 1918 1933 2076 156 141 -10.65 0 0 0 - - 99 - +3 2124 2157 2345 219 186 0.24 0 - 0 0 - 99 - -1 2634 2535 2401 231 132 -6.67 0 - 0 - 0 99 - 0004 +2 1832 2135 2755 921 618 -3.21 0 - 0 - - 99 - +1 2743 2770 2928 183 156 -9.58 0 0 0 - - 99 - +2 2756 2768 2983 225 213 -4.29 0 - 0 - - 99 - -1 3126 3015 2788 336 225 -8.42 0 - - - 0 99 - +1 3010 3076 3204 192 126 -12.85 0 0 0 - - 99 0 +2 2984 3101 3253 267 150 -2.56 0 - 0 - - 99 0 +2 3254 3284 3430 174 144 -0.75 0 - 0 0 - 99 - +3 3288 3300 3434 144 132 0.07 0 - - 0 - 99 - +3 3474 3489 3668 192 177 2.03 0 - - 0 - 99 - -1 3759 3759 3628 129 129 -12.90 0 0 - - 0 99 - +1 3586 3592 3801 213 207 -8.47 0 0 - - - 99 - -3 4088 4085 3963 123 120 -11.76 0 - 0 - - 99 0 -1 4167 4137 4015 150 120 -10.18 0 - 0 - 0 99 - -3 4295 4292 4089 204 201 -2.66 0 - 0 0 - 99 0 +2 3728 4046 4336 606 288 -4.86 0 - 0 - - 99 - 0005 -2 4366 4363 1250 3114 3111 14.90 99 - - - - 99 - +3 4074 4095 4370 294 273 1.71 0 - - 0 - 99 - +2 4352 4502 4708 354 204 -5.96 0 - 0 - - 99 - +2 4757 4772 5071 312 297 1.22 0 - 0 - - 99 - +3 4926 4953 5096 168 141 1.41 0 - - 0 - 99 - +2 5078 5117 5260 180 141 -2.85 0 - 0 - - 99 - 0006 -2 5428 5377 4403 1023 972 8.81 99 - - - - 99 - +2 5783 5810 5959 174 147 -6.77 0 - 0 - 99 - - 0007 -1 6177 6132 5665 510 465 6.49 99 - - - 99 - - 0008 +2 5963 5978 6184 219 204 -1.06 99 - 99 - - - - 0009 +3 6090 6102 6251 159 147 -4.95 99 - - 99 - - - 0010 -3 6374 6362 6129 243 231 6.21 99 - - - - - 99 0011 -2 6694 6694 6443 249 249 -5.08 99 - - - - 99 - +2 6632 6641 6907 273 264 -7.12 0 - 0 99 0 - - -1 6921 6813 6628 291 183 -10.19 0 - 0 99 0 - - -3 7130 7028 6861 267 165 -1.52 0 - - 99 - - 0 -3 7742 7724 7488 252 234 -0.46 0 - - 99 - - 0 0012 +3 6513 6555 7805 1290 1248 10.82 99 - - 99 - - - 0013 +2 7784 7802 7942 156 138 -4.88 85 - 85 - - - 14 0014 -3 8018 7985 7743 273 240 -6.58 99 - - - - - 99 -3 8762 8318 8019 741 297 -0.24 0 - - 99 - - 0 0015 +3 7863 7872 8840 975 966 9.12 99 - - 99 - - - -2 8851 8788 8621 228 165 -5.14 0 - - 99 - 0 - +3 8919 9117 9308 387 189 1.11 0 - - 0 - 99 - 0016 -2 9352 9322 8924 426 396 10.94 99 - - - - 99 - +3 9309 9486 9866 555 378 -1.15 0 - - 0 - - 99 0017 -3 10121 9998 9333 786 663 11.60 99 - - - - - 99 +2 9983 10016 10291 306 273 1.20 0 - 0 - - 99 - +3 10350 10512 10643 291 129 -3.38 0 - 0 0 - 99 - +2 10292 10490 10654 360 162 -4.26 0 - 0 - - 99 - +1 10537 10561 10710 171 147 -9.61 0 0 - - - 99 - -3 10760 10745 10593 165 150 -8.50 0 - - - - 99 0 +2 10670 10679 10819 147 138 -4.57 0 - 0 - - 99 - -1 11010 11010 10813 195 195 -8.61 0 - - - 0 99 - +3 10872 10881 11057 183 174 -0.13 0 - 0 0 - 99 - +2 10820 10922 11077 255 153 2.49 0 - 0 - - 99 - 0018 -2 11185 11149 9995 1188 1152 12.14 99 - - - - 99 - +3 11058 11064 11189 129 123 -0.40 0 - - 0 - 99 - +3 11190 11190 11339 147 147 0.60 0 - 0 0 - 99 - +2 11162 11489 11806 642 315 -0.31 0 - 0 - - 99 - +2 11870 11957 12127 255 168 -1.32 0 - 0 - - 99 - 0019 -2 12178 12163 11186 990 975 13.54 99 - - - - 99 - 0020 +1 12166 12166 12369 201 201 -1.57 99 99 - - - - - +2 12512 12548 12670 156 120 -5.08 0 0 0 - 99 - - +1 12493 12523 12729 234 204 -3.38 0 0 - - 99 - - -3 12887 12845 12711 174 132 -13.00 0 - - - 99 - 0 +1 12730 12853 12978 246 123 -4.56 0 0 - - 99 - - 0021 -1 13260 13239 12169 1089 1068 10.20 99 - - - 99 - - +2 13265 13295 13447 180 150 -6.36 0 0 0 - 99 - - -2 13879 13822 13574 303 246 -8.71 0 - - - 99 0 - 0022 -1 13917 13911 13261 654 648 10.10 99 - - - 99 - - 0023 +2 13793 13850 13996 201 144 -1.42 99 - 99 - - - - -2 14071 14029 13880 189 147 -4.82 6 - - 93 - 6 - 0024 +3 13884 13884 14075 189 189 -2.55 96 - - 96 - 3 - 0025 -3 14126 14111 13983 141 126 3.36 99 - - - - - 99 0026 +1 14011 14011 14268 255 255 -2.46 99 99 - - - - - 0027 -1 14346 14340 14218 126 120 1.39 97 - - 2 97 - - -1 14541 14484 14347 192 135 -4.16 0 - - 99 0 0 - +1 14416 14455 14586 168 129 -15.65 0 0 - 99 - - 0 -3 14873 14513 14382 489 129 -4.84 0 - - 99 0 0 0 +1 14725 14734 14877 150 141 -6.44 0 0 - 99 0 0 0 -2 14965 14956 14663 300 291 -2.29 0 - - 99 0 0 - -1 15078 14718 14542 534 174 -13.40 0 - - 99 0 - 0 -2 15112 15112 14966 144 144 -6.02 0 - - 99 - 0 - 0028 +3 14133 14316 15515 1380 1197 9.82 99 - - 99 - - - -3 15521 15488 15321 198 165 -3.44 0 - - 99 - 0 0 -2 15553 15466 15263 288 201 -0.95 0 - - 99 - 0 - 0029 +1 15499 15502 15684 183 180 -2.04 99 99 - - - - - 0030 -2 15721 15703 15554 165 147 2.11 94 - 5 - - 94 - 0031 +2 15548 15599 15772 222 171 -0.72 99 - 99 - - - - 0032 +3 15666 15681 15812 144 129 6.81 99 - - 99 - - - 0033 -3 15857 15857 15729 126 126 -0.16 99 - - - - - 99 0034 -3 16130 15989 15858 270 129 -10.19 99 - - - - - 99 -3 16274 16259 16131 141 126 -7.00 0 99 - - 0 - 0 +2 16337 16349 16489 150 138 -3.83 0 99 0 - 0 - - 0035 +1 15937 15949 16626 687 675 14.20 99 99 - - - - - -3 16793 16511 16383 408 126 2.44 0 99 - - 0 - 0 +3 16959 16977 17177 216 198 -8.76 0 99 - 0 0 - - 0036 -1 17271 17199 16090 1179 1107 -3.67 0 99 - - 0 - - -3 17804 17744 17607 195 135 0.84 0 99 - - 0 - 0 -2 17932 17911 17672 258 237 -7.42 0 99 - - 0 0 - +3 17718 17787 17951 231 162 -5.65 0 99 - 0 0 - - -3 18089 18017 17847 240 168 2.49 0 99 - - 0 - 0 -3 18368 18335 18195 171 138 1.86 0 99 - - 0 - 0 0037 -1 18414 18414 17272 1140 1140 -2.31 0 99 - - 0 - - -3 18749 18740 18612 135 126 -8.24 0 99 - - - - 0 +3 18795 18837 18995 198 156 -6.28 0 99 - 0 0 - 0 0038 +1 16633 16639 19014 2379 2373 10.31 99 99 - - - - - -3 19256 18884 18750 504 132 1.88 0 99 - - - 0 0 -2 19456 19450 19319 135 129 -1.14 0 - - 99 - 0 0 -3 19568 19565 19293 273 270 -0.47 0 - - 99 - - 0 +1 19435 19474 19602 165 126 -7.44 0 0 - 99 - - - -2 19897 19864 19682 213 180 -1.96 0 - - 99 - 0 0 0039 +3 18996 19020 19955 957 933 10.13 99 - - 99 - - - -3 20000 19940 19569 429 369 -1.11 0 - - 99 - - 0 +3 19983 20010 20240 255 228 -6.89 0 99 - 0 - - - 0040 +1 19927 19990 20319 390 327 -2.94 99 99 - - - - - -3 20426 20339 20202 222 135 -5.75 0 - - - 99 - 0 +1 20320 20329 20496 174 165 -5.65 0 0 - - 99 - - -3 20711 20699 20568 141 129 -9.96 0 - - - 99 - 0 +2 20669 20690 20824 153 132 -6.73 0 - 0 - 99 0 - -2 20854 20767 20588 264 177 -7.93 0 - - - 99 0 - -3 20858 20858 20712 144 144 -7.05 0 - - - 99 0 0 0041 -1 20970 20961 20044 924 915 7.96 99 - - - 99 - - 0042 +2 20873 20873 21016 141 141 1.73 99 - 99 - - - - 0043 -2 21145 21028 20897 246 129 -3.44 99 - - - - 99 - 0044 -1 21144 21126 20986 156 138 5.48 99 - - - 99 0 -