Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRUI010000011.342.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRUI010000011.342.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRUI010000011.342.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRUI010000011.342.AOI_01 Sequence length = 20240 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 19 49 198 177 147 -9.37 0 0 - - - 99 - 0001 -2 322 313 29 291 282 -5.68 99 - - - - 99 - 0002 +3 282 318 458 174 138 -4.17 99 - - 99 - - - +1 406 412 567 159 153 -1.69 0 0 - - - - 99 +3 555 567 728 171 159 -0.05 0 - 0 0 - - 99 +2 449 590 904 453 312 -9.18 0 - 0 - - - 99 +1 991 1006 1152 159 144 -0.67 0 0 0 0 - - 99 +2 1010 1025 1168 156 141 -10.90 0 - 0 0 - - 99 +1 1216 1249 1437 219 186 -0.37 0 0 - 0 - - 99 -2 1726 1627 1493 231 132 -5.59 0 - - 0 - 0 99 0003 +3 924 1227 1847 921 618 -3.18 0 - - 0 - - 99 +2 1835 1862 2020 183 156 -9.09 0 - 0 0 - - 99 +3 1848 1860 2075 225 213 -4.09 0 - - 0 - - 99 -2 2218 2107 1880 336 225 -7.90 0 - - - - 0 99 +2 2102 2168 2296 192 126 -12.17 0 - 0 0 0 - 99 +3 2076 2193 2345 267 150 -2.70 0 - - 0 0 - 99 +3 2346 2376 2522 174 144 -1.57 0 0 - 0 - - 99 +1 2380 2392 2526 144 132 1.40 0 0 - - - - 99 +1 2566 2581 2760 192 177 2.11 0 0 - - - - 99 -2 2851 2851 2720 129 129 -11.49 0 - 0 - - 0 99 +2 2678 2684 2887 207 201 -8.04 0 - 0 - - - 99 -1 3180 3177 3055 123 120 -11.03 0 - - 0 0 - 99 -2 3259 3229 3107 150 120 -8.54 0 - - 0 - 0 99 -1 3387 3384 3181 204 201 -2.45 0 0 - 0 0 - 99 +3 2820 3138 3428 606 288 -5.25 0 - - 0 - - 99 0004 -3 3458 3455 342 3114 3111 15.04 99 - - - - - 99 +1 3166 3187 3462 294 273 1.40 0 0 - - - - 99 +3 3444 3594 3836 390 240 -3.43 0 - - 0 - - 99 +3 3849 3864 4163 312 297 1.56 0 - - 0 - - 99 +1 4018 4045 4188 168 141 0.82 0 0 - - - - 99 +3 4170 4209 4352 180 141 -2.84 0 - - 0 - - 99 0005 -3 4520 4469 3495 1023 972 9.08 99 - - - - - 99 +3 4875 4902 5051 174 147 -6.49 0 - - 0 - 99 - 0006 -2 5269 5224 4757 510 465 6.65 99 - - - - 99 - 0007 +3 5055 5070 5276 219 204 -1.88 99 - - 99 - - - 0008 +1 5182 5194 5343 159 147 -5.15 99 99 - - - - - 0009 -1 5466 5454 5221 243 231 6.21 99 - - - 99 - - 0010 -3 5786 5786 5535 249 249 -5.38 99 - - - - - 99 +3 5724 5733 5999 273 264 -7.05 0 99 - 0 - 0 - -2 6013 5905 5720 291 183 -10.55 0 99 - 0 - 0 - -1 6222 6120 5953 267 165 -0.89 0 99 - - 0 - - -1 6834 6816 6580 252 234 -0.74 0 99 - - 0 - - 0011 +1 5605 5647 6897 1290 1248 10.77 99 99 - - - - - 0012 +3 6876 6894 7034 156 138 -5.01 89 - - 89 10 - - 0013 -1 7110 7077 6835 273 240 -7.28 99 - - - 99 - - -1 7854 7410 7111 741 297 -0.72 0 99 - - 0 - - 0014 +1 6955 6964 7932 975 966 8.34 99 99 - - - - - -3 7943 7880 7713 228 165 -5.39 0 99 - - - - 0 +1 8011 8209 8400 387 189 0.60 0 0 - - - - 99 0015 -3 8444 8441 8016 426 423 9.95 99 - - - - - 99 +1 8401 8578 8760 357 180 -1.69 0 0 - - 99 - - +1 8761 8824 8958 195 132 -2.49 0 0 - - 99 - - 0016 -1 9213 9090 8425 786 663 10.78 99 - - - 99 - - +3 9075 9108 9563 486 453 -0.28 0 - - 0 - - 99 +1 9442 9604 9735 291 129 -3.96 0 0 0 0 - - 99 +3 9564 9582 9746 180 162 -4.37 0 - - 0 - - 99 +2 9608 9653 9802 192 147 -7.95 0 - 0 - - - 99 -1 9852 9837 9685 165 150 -6.37 0 - - - 0 - 99 +3 9762 9771 9911 147 138 -4.55 0 - - 0 - - 99 -2 10102 10102 9905 195 195 -8.23 0 - - - - 0 99 +1 9964 9973 10149 183 174 0.22 0 0 - 0 - - 99 +3 9912 10014 10169 255 153 2.44 0 - - 0 - - 99 0017 -3 10277 10241 9087 1188 1152 11.81 99 - - - - - 99 +1 10150 10156 10281 129 123 -1.89 0 0 - - - - 99 +1 10282 10300 10431 147 129 1.94 0 0 - 0 - - 99 +3 10254 10485 10898 642 411 -0.24 0 - - 0 - - 99 -2 11128 11089 10958 168 129 -5.99 0 - - 0 - 0 99 +3 10962 11007 11219 255 210 -0.76 0 - - 0 - - 99 0018 -3 11270 11255 10278 990 975 13.54 99 - - - - - 99 0019 +2 11258 11258 11461 201 201 -2.07 99 - 99 - - - - +3 11604 11640 11762 156 120 -4.82 0 - 0 0 - 99 - +2 11462 11615 11821 357 204 -4.20 0 - 0 - - 99 - -1 11949 11937 11803 144 132 -13.20 0 - - - 0 99 - +2 11822 11945 12190 366 243 -3.79 0 - 0 - - 99 - 0020 -2 12370 12370 11261 1107 1107 10.06 99 - - - - 99 - 0021 -3 13010 13004 12354 654 648 9.96 99 - - - - - 99 0022 +1 12886 12943 13089 201 144 -0.82 99 99 - - - - - 0023 -1 13164 13137 12973 189 162 -4.56 27 - 72 - 27 - - 0024 +2 12977 12977 13168 189 189 -3.49 84 - 84 - 15 - - 0025 +3 13104 13104 13361 255 255 -2.02 99 - - 99 - - - -1 13644 13494 13354 288 138 -3.33 0 - 99 - 0 - - +3 13536 13548 13679 141 129 -11.93 0 - 99 0 - 0 - -2 13966 13606 13421 543 183 -2.79 0 0 99 - 0 0 - +3 13818 13827 13970 150 141 -6.63 0 0 99 0 - 0 0 -1 14052 14049 13903 147 144 0.05 0 0 99 - 0 - 0 +1 13789 13870 14079 288 207 -8.71 0 0 99 - - - 0 -3 14171 13811 13635 534 174 -13.48 0 - 99 - - 0 0 -1 14205 14205 14059 144 144 -6.97 0 - 99 - 0 - - 0026 +2 13226 13409 14608 1380 1197 9.37 99 - 99 - - - - -2 14614 14581 14414 198 165 -3.46 0 - 99 - 0 0 - -1 14646 14559 14356 288 201 -2.02 0 - 99 - 0 - - 0027 +3 14592 14595 14756 162 159 -2.02 99 - - 99 - - - 0028 -1 14793 14775 14647 144 126 2.49 92 7 - - 92 - - 0029 +1 14641 14713 14844 201 129 -0.32 99 99 - - - - - 0030 +2 14738 14753 14884 144 129 5.15 99 - 99 - - - - 0031 +3 14811 14829 14966 153 135 1.25 99 - - 99 - - - 0032 -3 15200 15011 14874 324 135 -4.83 99 - - - - - 99 -3 15344 15329 15201 141 126 -6.43 0 99 - - 0 - 0 +2 15407 15419 15559 150 138 -5.42 0 99 0 - 0 - - 0033 +1 15007 15019 15696 687 675 13.60 99 99 - - - - - -3 15863 15581 15453 408 126 0.14 0 99 - - 0 - 0 0034 -1 16341 16269 15160 1179 1107 -3.16 0 99 - - 0 - - -3 16874 16814 16677 195 135 0.20 0 99 - - 0 - 0 -2 17002 16981 16742 258 237 -6.98 0 99 - - 0 0 - +3 16788 16857 17021 231 162 -6.66 0 99 - 0 0 - - -3 17159 17087 16917 240 168 2.59 0 99 - - 0 - 0 -3 17438 17405 17265 171 138 1.82 0 99 - - 0 - 0 0035 -1 17484 17484 16342 1140 1140 -2.56 0 99 - - 0 - - -3 17819 17810 17682 135 126 -7.88 0 99 - - - - 0 0036 +1 15703 15709 18084 2379 2373 10.56 99 99 - - - - - -3 18326 17954 17820 504 132 1.65 0 99 - - - 0 0 -2 18526 18520 18389 135 129 0.56 0 - - 99 - 0 0 -3 18638 18623 18363 273 258 -0.57 0 - - 99 - - 0 +1 18505 18550 18672 165 120 -8.54 0 0 - 99 - - - -2 18967 18934 18752 213 180 -1.71 0 - - 99 - 0 0 0037 +3 18066 18090 19025 957 933 10.75 99 - - 99 - - - -3 19070 19010 18639 429 369 -1.79 0 - - 99 - - 0 0038 +1 18997 19060 19209 210 147 -1.88 99 99 - - - - - -3 19496 19409 19272 222 135 -5.79 0 - - - 99 - 0 +1 19390 19423 19566 174 141 -5.57 0 0 - - 99 - - -3 19781 19769 19638 141 129 -10.23 0 - - - 99 - 0 -2 19888 19837 19658 228 177 -8.67 0 - - - 99 0 - +2 19739 19760 19894 153 132 -6.02 0 - 0 - 99 - - -3 19928 19928 19782 144 144 -6.49 0 - - - 99 - 0 0039 -1 20040 20031 19114 924 915 8.22 99 - - - 99 - - 0040 +2 19943 19943 20086 141 141 2.59 99 - 99 - - - - 0041 -2 20140 20098 19967 171 129 -4.88 99 - - - - 99 - 0042 -1 20238 20220 20056 180 162 7.11 99 - - - 99 - -