Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRTR010000091.457.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRTR010000091.457.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRTR010000091.457.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRTR010000091.457.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +1 1 4 177 174 171 -1.38 99 99 - - - - - -3 476 305 156 318 147 -3.00 0 - - 99 - - 0 +1 391 415 567 174 150 -14.58 0 0 - 99 - - - -2 685 655 506 177 147 -5.07 0 - - 99 - 0 - +2 728 752 892 162 138 -7.18 0 - 0 99 - - 0 -2 943 904 761 180 141 -6.21 0 - - 99 - 0 0 0002 -3 1373 1358 543 828 813 0.99 0 - - 99 - - 0 -3 1607 1502 1374 231 126 -6.51 0 - 0 99 - - 0 +1 1417 1438 1611 192 171 -3.64 0 0 0 99 - - 0 -2 1711 1672 1538 171 132 2.09 0 - 0 99 - 0 - -1 1941 1896 1771 168 123 -11.15 0 - - 99 0 - 0 0003 +3 153 174 2078 1923 1902 11.45 99 - - 99 - - - -3 2144 1919 1767 375 150 0.51 0 - - 99 - - 0 +2 2159 2351 2599 438 246 1.09 0 - 0 - - 99 - 0004 -2 2632 2626 2168 462 456 7.94 99 - - - - 99 - -3 2732 2723 2592 138 129 -5.48 0 - - 99 - - 0 +3 2568 2736 2876 306 138 -11.41 0 0 - 0 99 - - +1 2647 2821 3024 375 201 -1.26 0 0 - - 99 - - +1 3100 3169 3303 201 132 -1.76 0 0 0 - 99 - - +2 3053 3107 3313 258 204 -1.77 0 - 0 - 99 - - 0005 -1 3324 3294 2629 693 663 9.54 99 - - - 99 - - +3 3321 3336 3575 252 237 -1.60 0 0 - 0 - - 99 +1 3304 3427 3837 531 408 3.45 0 0 - - - - 99 0006 -3 3998 3986 3300 696 684 11.22 99 - - - - - 99 0007 +1 3838 3853 4014 174 159 4.43 99 99 - - - - - -2 4270 4267 4121 147 144 4.42 1 - - 0 - 1 98 +3 4116 4143 4274 156 129 2.49 0 - - 0 - 0 99 +3 4359 4428 4622 261 192 0.56 0 - - 0 - - 99 +2 4610 4658 4804 192 144 -4.24 0 - 0 - - - 99 +3 4677 4866 5057 378 189 -2.29 0 0 - 0 - - 99 +1 4747 4951 5130 381 177 -0.56 0 0 - - - - 99 -2 5161 5137 4970 189 165 -3.10 0 - - - - 0 99 +2 5033 5069 5203 168 132 -3.18 0 - 0 0 - - 99 +1 5131 5143 5319 186 174 -3.79 0 0 - 0 - - 99 -1 5469 5457 5323 144 132 -5.29 0 - - 0 0 - 99 +3 5058 5298 5492 432 192 -1.11 0 - - 0 - - 99 0008 -3 5519 5447 4116 1401 1329 7.23 99 - - - - - 99 0009 +2 5645 5648 5773 126 123 -0.54 21 - 21 78 - - - 0010 -1 6120 6114 5980 138 132 1.24 26 - - - 26 - 73 0011 -3 6206 6116 5928 276 186 3.27 99 - - - - - 99 -3 6368 6353 6207 159 144 0.88 0 - - 99 - - 0 -1 6630 6627 6403 225 222 -0.79 0 - - 99 0 - - -3 6644 6614 6483 159 129 3.32 0 - - 99 0 - 0 0012 +3 6153 6198 6833 678 633 7.12 99 - - 99 - - - -1 7170 7002 6853 315 147 3.14 0 99 - - 0 - - +2 6974 7031 7186 210 153 -7.24 0 99 0 - - - - -3 7364 7355 7062 300 291 1.26 0 99 - - - - 0 -2 7522 7522 7385 135 135 -4.70 0 99 - - 0 0 - +2 7433 7436 7618 183 180 -0.54 0 99 0 0 - - - +3 7419 7485 7625 204 138 -5.79 0 99 - 0 - - - 0013 +1 6847 6865 7722 873 855 9.16 99 99 - - - - - -2 7855 7651 7523 330 126 -5.43 0 99 - - - 0 - +2 7769 7865 8005 234 138 -7.31 0 99 0 - 0 - - -3 8162 8156 8028 132 126 2.11 0 99 - - 0 - 0 -1 8208 8166 7753 453 411 3.65 0 99 - - 0 - - -1 8490 8490 8341 147 147 1.60 0 99 - - 0 - - 0014 +1 7723 7735 8775 1050 1038 12.07 99 99 - - - - - 0015 +3 8571 8649 8870 297 219 -2.53 99 - - 99 - - - -1 9051 9039 8887 162 150 0.57 0 - 99 - 0 - - +1 8905 8935 9150 243 213 -10.06 0 0 99 - - 0 - -2 9151 9076 8909 240 165 -8.30 0 0 99 - - 0 - -1 9246 9216 9052 192 162 -2.97 0 - 99 - 0 - - 0016 +2 8795 8810 9457 660 645 11.16 99 - 99 - - - - -2 9505 9364 9152 351 210 -3.37 0 - 99 - - 0 - 0017 +3 9441 9468 9632 189 162 -5.07 99 - 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- 0 - - 99 0026 -3 15134 15128 14979 153 147 4.96 99 - - 0 - - 99 +1 15175 15226 15399 222 171 -4.49 0 0 - - 99 - - +1 15400 15430 15552 150 120 2.43 0 0 - - 99 - - -2 15724 15658 15443 279 213 -1.37 0 - - - 99 0 - +1 15703 15874 16065 360 189 1.76 0 0 - - 99 - - +3 15930 15981 16109 177 126 0.01 0 - - 0 99 - - 0027 -1 16119 16101 15103 1014 996 9.35 99 - - - 99 - - -2 16327 16318 16055 270 261 1.93 0 - 99 - - 0 - +3 16467 16467 16592 123 123 -4.43 0 - 99 0 - 0 - -3 16817 16667 16524 291 141 -9.89 0 - 99 - - - 0 +3 16854 16878 17030 174 150 0.00 0 - 99 0 - - - -1 17355 17175 17050 303 123 -3.66 0 - 99 - 0 - - -2 17395 17395 17255 138 138 -4.34 0 - 99 - - 0 - 0028 +2 16040 16196 17425 1383 1227 11.42 99 - 99 - - - - -1 17760 17754 17620 138 132 -10.40 0 - - 99 0 - 0 -3 17843 17681 17484 357 195 2.71 0 - - 99 - - 0 +1 17740 17758 17916 174 156 -9.66 0 0 - 99 - 0 - -2 18184 17818 17663 519 153 -4.36 0 - - 99 - 0 0 -3 18314 18308 18132 180 174 1.93 0 - - 99 - - 0 0029 +3 17418 17454 18344 924 888 12.46 99 - - 99 - - - 0030 -2 18505 18412 18185 318 225 1.81 99 - - - - 99 - -2 18859 18808 18521 336 285 1.59 0 - 99 - - 0 - -3 18908 18863 18735 171 126 -9.21 0 0 99 - - 0 0 +1 18721 18793 18990 267 195 -9.34 0 0 99 - - - - -1 19317 19224 18973 342 249 -2.63 0 - 99 - 0 - - +1 19348 19495 19674 324 177 -10.13 0 0 99 - - 0 - -2 19786 19657 19490 294 165 -2.05 0 0 99 - - 0 - 0031 +2 18257 18359 19849 1590 1488 10.57 99 - 99 - - - - -1 20193 20160 19825 366 333 2.48 0 99 - 0 0 - - -3 20252 20066 19881 369 183 -0.66 0 99 - 0 0 - 0