Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRTR010000041.497.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRTR010000041.497.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRTR010000041.497.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRTR010000041.497.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 578 557 417 159 138 -1.21 0 - - - 99 - 0 +3 510 567 806 294 237 -2.03 0 - - 0 99 - - -3 995 923 666 327 255 3.69 0 - - - 99 - 0 +1 772 925 1155 381 228 3.24 0 0 - - 99 - - 0001 -1 1500 1404 238 1260 1164 8.81 99 - - - 99 - - -3 1757 1715 1584 171 129 1.06 1 98 - - - - 1 0002 +1 1588 1600 1896 306 294 5.65 99 99 - - - - - 0003 +3 1821 1935 2147 324 210 7.23 99 - - 99 - - - 0004 +2 2033 2063 2227 192 162 3.15 99 - 99 - - - - 0005 -3 2303 2291 2166 135 123 -2.34 99 - - - - - 99 -1 2466 2448 2323 141 123 0.80 0 - 99 - 0 - - -1 2865 2823 2701 162 120 -0.78 0 - 99 - 0 - - 0006 +2 2228 2285 3055 825 768 10.65 99 - 99 - - - - -3 3344 3323 3120 222 201 4.75 10 89 - - - - 10 -1 3411 3390 3235 174 153 0.12 0 99 - - 0 - - 0007 +1 3097 3166 3567 468 399 6.70 99 99 - - - - - 0008 +3 4008 4017 4193 183 174 1.10 99 - 0 99 - - - 0009 -1 4260 4218 4045 213 171 0.36 94 - 5 - 94 - - +1 4126 4165 4293 165 126 -9.32 0 0 99 - - - 0 +3 4320 4371 4514 192 141 0.27 7 - 92 7 - - - -2 4783 4780 4472 309 306 -0.29 0 - 99 - - 0 - -1 5001 4965 4522 477 441 0.40 0 - 99 - 0 - - -2 5323 5299 5171 150 126 1.46 3 - 96 - - 3 - 0010 +3 5211 5214 5351 138 135 5.05 37 - 62 37 - - - -1 5865 5865 5524 339 339 2.52 0 - 99 - 0 - - +1 5722 5743 5874 150 129 -0.27 0 0 99 - - - - -3 5999 5990 5859 138 129 -5.34 0 - 99 - - - 0 -3 6212 6206 6063 147 141 0.71 0 - 99 - - - 0 0011 +2 3875 4067 6340 2463 2271 6.81 99 - 99 - - - - +1 6652 6700 6861 207 159 0.86 0 0 0 - - - 99 +2 6674 6731 6874 198 141 3.79 0 - 0 - - - 99 0012 -3 7004 6977 6399 603 576 10.36 99 - - - - - 99 0013 -2 7354 7303 7151 201 150 2.92 99 - - - - 99 - +2 7268 7325 7573 303 246 -4.54 0 - 0 99 - - 0 0014 +3 7230 7236 7886 654 648 8.84 99 - - 99 - - - -1 8418 8295 8050 366 243 -3.55 0 99 - - 0 - - +2 8291 8303 8437 144 132 -10.21 0 99 0 - - - - -3 8636 8600 8478 156 120 -1.98 0 99 - - 0 - 0 -1 8778 8625 8425 351 198 -2.35 0 99 - - 0 - - 0015 +1 7870 7870 8979 1107 1107 9.17 99 99 - - - - - 0016 -1 8982 8982 8779 201 201 -0.46 99 - - - 99 - - -3 9278 9233 9021 255 210 0.97 0 - - 99 - - 0 -2 9958 9940 9809 147 129 1.03 0 - - 99 - 0 0 0017 +3 8970 8985 9962 990 975 12.05 99 - - 99 - - - -3 9986 9953 9354 630 597 -1.25 0 - - 99 - - 0 -2 10090 10084 9959 129 123 0.55 0 - - 99 - 0 - -2 10276 10267 10091 183 174 -1.47 0 - - 99 - 0 0 -3 10328 10298 10071 255 225 1.58 0 - - 99 - - 0 +1 10138 10138 10335 195 195 -5.61 0 0 - 99 - - - -3 10478 10469 10329 147 138 -3.74 0 - - 99 - - 0 +2 10388 10403 10555 165 150 -3.35 0 - 0 99 - - - -1 10632 10566 10438 192 126 -2.95 0 - - 99 0 - - -3 10676 10658 10494 180 162 -4.80 0 - - 99 - - 0 -2 10798 10636 10505 291 129 -5.66 0 - - 99 0 0 0 0018 +3 9963 9999 11153 1188 1152 10.24 99 - - 99 - - - -3 11165 11132 10677 486 453 0.84 0 - - 99 - - 0 0019 +2 11027 11150 11815 786 663 10.08 99 - 99 - - - - -2 11839 11662 11399 438 261 -3.19 0 - 99 - - 0 - 0020 +3 11796 11799 12224 426 423 12.60 99 - - 99 - - - -2 12229 12031 11840 387 189 -0.04 0 - - 99 - 0 - +1 12295 12358 12525 228 165 -3.39 0 0 - - - - 99 +3 12384 12828 13127 741 297 -0.61 0 - - 0 - - 99 0021 -3 13283 13274 12306 975 966 7.36 99 - - - - - 99 0022 -1 13362 13344 13204 156 138 1.53 95 - - 4 95 - - 0023 +3 13128 13161 13403 273 240 -1.83 99 - - 99 - - - +3 13404 13422 13658 252 234 -1.08 0 - - 0 - - 99 +3 14016 14118 14285 267 165 -1.75 0 - - 0 - - 99 -1 14514 14505 14239 273 264 -4.10 0 - 0 - 0 - 99 +2 14225 14333 14518 291 183 -5.24 0 - 0 - 0 - 99 0024 -3 14633 14591 13341 1290 1248 9.76 99 - - - - - 99 0025 +1 14452 14452 14703 249 249 0.09 99 99 - - - - - 0026 +3 14772 14784 15017 243 231 8.06 99 - - 99 - - - 0027 -3 15056 15044 14895 159 147 -3.91 99 - - - - - 99 0028 -1 15183 15168 14962 219 204 1.49 99 - - - 99 - - -1 15363 15336 15187 174 147 -3.87 0 - 99 - 0 - - 0029 +2 14969 15014 15481 510 465 11.47 99 - 99 - - - - -1 16068 16029 15886 180 141 -1.11 0 99 - - 0 - - -3 16220 16184 16050 168 132 -1.54 0 99 - - - - 0 -1 16389 16374 16075 312 297 -0.24 0 99 - - 0 - - 0030 +1 15718 15769 16743 1023 972 8.00 99 99 - - - - - -1 16794 16644 16501 291 141 -4.83 0 99 - - 0 - - +3 16851 16854 17057 204 201 -0.88 0 99 - 0 0 - 0 -3 17072 16940 16776 294 162 2.00 0 99 - - - - 0 +2 16979 17009 17131 150 120 -7.53 0 99 0 - 0 - - +3 17058 17088 17213 153 123 -12.64 0 99 - 0 0 - - -1 17418 17100 16810 606 288 -2.83 0 99 - - 0 - - +2 17387 17387 17518 129 129 -10.55 0 99 0 - - 0 - -2 17560 17554 17345 213 207 -6.79 0 99 - - - 0 - -3 17672 17657 17478 192 177 0.01 0 99 - - - - 0 -3 17858 17846 17712 144 132 0.50 0 99 - - - - 0 -1 17892 17862 17716 174 144 -0.33 0 99 - - 0 - 0 -2 18136 18070 17942 192 126 -11.73 0 99 - 0 0 0 - -1 18162 18045 17893 267 150 0.21 0 99 - 0 0 - - +2 18020 18131 18358 336 225 -5.20 0 99 0 - - - - -1 18390 18378 18163 225 213 -3.30 0 99 - - 0 - - -2 18403 18376 18218 183 156 -7.23 0 99 - - 0 0 - +2 18512 18611 18745 231 132 -4.44 0 99 0 - 0 - - -3 19022 18989 18801 219 186 -1.39 0 99 - - 0 - 0 -2 19228 19213 19070 156 141 -8.46 0 99 - - 0 0 - -3 19247 19247 19086 159 159 -0.91 0 99 - - 0 - 0 0031 -1 19314 19011 18391 921 618 -1.93 0 99 - - 0 - - -1 19683 19671 19510 171 159 0.56 0 99 - - 0 0 - -2 19789 19648 19334 453 312 -7.55 0 99 - - - 0 - -3 19832 19793 19671 159 120 -4.27 0 99 - - - 0 0 0032 +1 16780 16783 19896 3114 3111 8.30 99 99 - - - - - 0033 -1 19956 19920 19780 174 138 -2.88 99 - - - 99 - - 0034 -3 20387 20372 20160 225 210 -4.71 99 - - - - - 99 +1 20290 20335 20607 315 270 -4.95 0 0 - - 99 - - +2 20522 20525 20734 210 207 1.14 0 - 0 - 99 - - +1 20779 20899 21111 330 210 -0.19 0 0 - - 99 0 - 0035 -1 21144 21075 20212 930 861 10.51 99 - - - 99 - -