Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRQK010000051.992.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRQK010000051.992.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRQK010000051.992.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRQK010000051.992.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +1 1 28 192 189 162 12.95 99 99 - 0 - - - 0002 +3 6 150 281 273 129 -3.23 99 - - 99 - - - 0003 -3 305 305 162 141 141 1.49 99 - - - - - 99 +2 320 320 466 144 144 -5.58 0 99 0 0 - - 0 -3 509 464 306 201 156 -6.11 0 99 - - - - 0 +3 324 411 590 264 177 -7.66 0 99 - 0 - - - +2 467 479 610 141 129 -8.63 0 99 0 - - - - -1 858 825 682 174 141 -3.97 0 99 - - 0 - - +2 752 839 976 222 135 -4.31 0 99 0 - - - - 0004 +1 208 217 1125 915 906 7.20 99 99 - - - - - 0005 -1 1242 1179 1039 201 138 -1.04 99 - - - 99 - - +3 1272 1305 1487 213 180 0.50 0 - 0 0 - 99 - +2 1169 1229 1600 429 369 -1.95 0 - 0 - - 99 - -1 1734 1689 1567 165 120 -4.84 0 - - - 0 99 - +3 1713 1719 1850 135 129 1.21 0 - 0 0 - 99 - +2 1601 1616 1876 273 258 -1.33 0 - 0 - - 99 - 0006 -2 2173 2149 1214 957 933 11.09 99 - - - - 99 - +2 1913 2285 2419 504 132 2.15 0 - 0 0 99 - - +2 2420 2429 2557 135 126 -6.91 0 - 0 - 99 - - +2 2801 2834 2974 171 138 3.32 0 0 0 - 99 - - +2 3080 3152 3322 240 168 3.57 0 0 0 - 99 - - -2 3451 3382 3218 231 162 -6.90 0 0 - - 99 0 - +3 3237 3258 3497 258 237 -5.27 0 0 - 0 99 - - +2 3365 3425 3562 195 135 2.24 0 0 0 - 99 - - 0007 +1 2755 2755 3897 1140 1140 -1.68 0 0 - - 99 - - -2 4210 4186 3980 228 204 -9.65 0 0 - - 99 0 - 0008 -1 4536 4530 2155 2379 2373 10.47 99 - - - 99 - - +2 4376 4658 4786 408 126 2.34 0 0 0 - 99 - - -3 4832 4820 4680 150 138 -2.95 0 0 - - 99 - 0 +2 4895 4910 5038 141 126 -4.78 0 0 0 - 99 - - 0009 +1 3898 3970 5079 1179 1107 -2.59 0 0 - - 99 - - 0010 -1 5232 5220 4543 687 675 13.82 99 - - - 99 - - 0011 +2 5039 5129 5311 270 180 -6.53 99 - 99 - - - - 0012 +2 5447 5465 5593 144 126 3.38 97 - 97 - - 2 - 0013 -2 5599 5527 5273 324 252 0.06 99 - - - - 99 - 0014 -3 5648 5645 5484 162 159 -0.64 99 - - - - - 99 +1 5626 5659 5826 198 165 -2.25 0 0 0 - 99 - - +2 5594 5681 5884 288 201 0.29 0 - 0 - 99 - - +2 6035 6035 6181 144 144 -6.75 0 - 0 - 99 - - +2 6188 6191 6337 147 144 -0.30 0 - 0 0 99 0 - -3 6422 6413 6270 150 141 -5.29 0 0 - 0 99 0 0 -2 6451 6370 6161 288 207 -8.88 0 - - 0 99 0 - +3 6069 6429 6605 534 174 -11.18 0 0 - 0 99 - - -3 6713 6692 6561 150 129 -12.60 0 0 - - 99 - 0 +1 6274 6634 6765 489 129 -3.85 0 0 0 0 99 - - +3 6606 6663 6800 192 135 -3.54 0 - 0 0 99 - - 0015 +3 6801 6807 6929 126 120 1.39 97 - - 97 2 - - 0016 -1 7014 6831 5632 1380 1197 9.73 99 - - - 99 - - 0017 -3 7136 7136 6879 255 255 -1.89 99 - - - - - 99 0018 -1 7263 7263 7072 189 189 -3.56 19 - 80 - 19 - - 0019 +2 7076 7103 7267 189 162 -3.11 81 - 81 - 18 - - 0020 -2 7354 7297 7151 201 144 -0.92 99 - - - - 99 - -2 7882 7852 7700 180 150 -2.54 0 - - 99 - 0 0 0021 +3 7230 7236 7886 654 648 9.79 99 - - 99 - - - -3 7928 7823 7638 288 183 -2.55 0 - - 99 - - 0 -1 8418 8295 8050 366 243 -3.55 0 99 - - 0 - - +2 8291 8303 8437 144 132 -12.96 0 99 0 - - - - -3 8636 8600 8478 156 120 -0.83 0 99 - - 0 - 0 -1 8655 8625 8425 228 198 -0.93 0 99 - - 0 - - 0022 +1 7870 7909 8979 1107 1068 10.88 99 99 - - - - - 0023 -1 8982 8982 8779 201 201 -0.33 99 - - - 99 - - -3 9278 9191 9021 255 168 -1.42 0 - - 99 - - 0 -2 9958 9958 9809 147 147 0.17 0 - - 99 - 0 0 0024 +3 8970 8985 9962 990 975 13.63 99 - - 99 - - - -3 9986 9953 9354 630 597 -1.23 0 - - 99 - - 0 -2 10090 10084 9959 129 123 -0.02 0 - - 99 - 0 - -2 10276 10267 10091 183 174 0.81 0 - - 99 - 0 0 -3 10328 10226 10071 255 153 1.84 0 - - 99 - - 0 +1 10138 10138 10335 195 195 -7.03 0 0 - 99 - - - -3 10478 10469 10329 147 138 -4.78 0 - - 99 - - 0 +2 10388 10403 10555 165 150 -6.02 0 - 0 99 - - - -1 10632 10587 10438 192 147 -8.02 0 - - 99 0 - - -3 10676 10658 10494 180 162 -4.51 0 - - 99 - - 0 -2 10798 10636 10505 291 129 -2.46 0 - - 99 0 0 0 0025 +3 9963 9999 11153 1188 1152 11.81 99 - - 99 - - - -3 11165 11039 10677 486 360 -0.95 0 - - 99 - - 0 -2 11614 11416 11282 330 132 -3.28 0 - 99 - - 0 - 0026 +2 11027 11150 11815 786 663 11.32 99 - 99 - - - - -2 11839 11737 11615 222 120 1.62 0 - 99 - - 0 - 0027 +3 11796 11826 12224 426 396 10.24 99 - - 99 - - - -2 12229 12031 11840 387 189 0.10 0 - - 99 - 0 - +1 12385 12829 13128 741 297 -0.55 0 0 - - 99 - - 0028 -1 13284 13275 12307 975 966 8.26 99 - - - 99 - - 0029 -2 13363 13345 13205 156 138 -6.06 73 26 - - - 73 - 0030 +1 13129 13162 13404 273 240 -6.80 99 99 - - - - - +1 13405 13423 13659 252 234 0.01 0 0 - - 99 - - +1 14017 14119 14286 267 165 -0.96 0 0 - - 99 - - -2 14515 14506 14240 273 264 -7.31 0 - - 0 99 0 - +3 14226 14334 14519 291 183 -7.93 0 - - 0 99 0 - 0031 -1 14634 14592 13342 1290 1248 10.47 99 - - - 99 - - 0032 +2 14453 14453 14704 249 249 -4.32 99 - 99 - - - - 0033 +1 14773 14785 15018 243 231 8.09 99 99 - - - - - 0034 -2 15184 15169 14963 219 204 -3.09 95 - - - 4 95 - 0035 -1 15192 15090 14896 294 192 -1.68 99 - - - 99 - - -2 15364 15337 15188 174 147 -5.35 0 - - 99 - 0 - 0036 +3 14970 15015 15482 510 465 6.08 99 - - 99 - - - -3 15917 15890 15723 192 165 -9.34 0 - 99 - - - 0 -2 16069 16030 15887 180 141 -2.65 0 - 99 - - 0 - -1 16221 16185 16051 168 132 1.59 0 - 99 - 0 - - -2 16402 16345 16076 324 267 0.62 0 - 99 - - 0 - 0037 +2 15719 15770 16744 1023 972 8.86 99 - 99 - - - - -2 16795 16645 16403 390 240 -3.50 0 - 99 - - 0 - +1 16852 16855 17058 204 201 -2.09 0 0 99 - 0 0 - -1 17073 17052 16777 294 273 2.11 0 - 99 - 0 - - +3 16980 17010 17132 150 120 -6.43 0 - 99 0 - 0 - +1 17059 17062 17184 123 120 -9.78 0 0 99 - - 0 - -2 17419 17101 16811 606 288 -4.65 0 - 99 - - 0 - +3 17388 17388 17519 129 129 -10.21 0 - 99 0 - - 0 -3 17561 17555 17346 213 207 -8.68 0 - 99 - - - 0 -1 17712 17658 17479 231 177 -2.57 0 - 99 - 0 - - -1 17859 17847 17713 144 132 -0.58 0 - 99 - 0 - - -2 17893 17863 17717 174 144 1.18 0 - 99 - 0 0 - -3 18137 18071 17943 192 126 -10.31 0 0 99 - - 0 0 -2 18163 18046 17894 267 150 -1.09 0 0 99 - - 0 - +3 18021 18132 18359 336 225 -7.75 0 - 99 0 - - - -2 18391 18379 18164 225 213 -3.74 0 - 99 - - 0 - -3 18404 18377 18219 183 156 -9.55 0 - 99 - - 0 0 +3 18513 18612 18746 231 132 -4.49 0 - 99 0 - 0 - -1 18798 18777 18637 159 138 0.26 0 - 99 - 0 0 - -1 19023 18990 18802 219 186 1.03 0 - 99 - 0 0 - -3 19229 19214 19071 156 141 -8.67 0 - 99 - - 0 0 -1 19248 19248 19087 159 159 -0.22 0 - 99 - 0 0 - 0038 -2 19315 19012 18392 921 618 -2.40 0 - 99 - - 0 - -2 19684 19672 19511 171 159 0.51 0 - 99 - - 0 0 -3 19790 19649 19335 453 312 -7.91 0 - 99 - - - 0 -1 19833 19827 19672 159 153 0.04 0 - 99 - 0 - - 0039 +2 16781 16784 19897 3114 3111 14.27 99 - 99 - - - - 0040 -2 19957 19921 19781 174 138 -3.48 99 - - - - 99 - 0041 -1 20388 20373 20161 225 210 -5.70 99 - - - 99 - - -3 20672 20639 20517 153 120 -3.43 0 - 0 - - 99 0 +2 20291 20540 20824 531 282 -1.72 0 - 0 0 - 99 - 0042 -2 20872 20776 20213 657 561 7.63 99 - - - - 99 - +1 20764 20875 21036 270 159 -2.34 0 0 - 0 99 - - 0043 -1 21144 21129 20734 408 393 3.16 99 - - 0 99 - -