Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QROI010000071.969.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QROI010000071.969.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QROI010000071.969.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QROI010000071.969.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 377 266 81 294 183 -1.80 0 - - 99 0 - 0 0001 +3 3 12 407 402 393 4.61 99 - - 99 0 - - +1 469 502 624 153 120 -2.46 0 0 99 - - 0 - -2 850 601 317 531 282 -2.71 0 - 99 - 0 0 - 0002 +2 269 365 928 657 561 8.15 99 - 99 - - - - 0003 +3 753 768 980 225 210 -6.19 99 - - 99 - - - 0004 +2 1184 1220 1360 174 138 -3.57 99 - 99 - - - - +3 1308 1314 1469 159 153 0.06 0 - - 0 - 99 - +2 1457 1469 1702 243 231 -0.29 0 0 0 - - 99 - +1 1351 1492 1806 453 312 -9.21 0 0 - - - 99 - +3 1893 1908 2054 159 144 -1.15 0 0 0 0 - 99 - +1 1912 1927 2070 156 141 -9.90 0 0 0 - - 99 - +3 2118 2190 2339 219 147 -0.62 0 - 0 0 - 99 - -1 2628 2595 2395 231 198 -2.04 0 - 0 - 0 99 - 0005 +2 1745 2129 2749 1002 618 -3.45 0 - 0 - - 99 - +1 2737 2764 2922 183 156 -9.56 0 0 - - - 99 - -1 3120 3009 2782 336 225 -6.65 0 - - - 0 99 - +1 3004 3070 3198 192 126 -9.13 0 0 0 - - 99 - +2 2978 3095 3247 267 150 -1.16 0 - 0 - - 99 - +2 3248 3278 3424 174 144 0.55 0 - 0 0 - 99 - +3 3282 3294 3428 144 132 -0.03 0 - - 0 - 99 - +3 3468 3483 3662 192 177 -0.01 0 - - 0 - 99 - +1 3580 3586 3789 207 201 -6.04 0 0 - - - 99 - -3 4082 4079 3957 123 120 -9.50 0 - 0 - - 99 0 -1 4161 4131 4009 150 120 -8.57 0 - 0 - 0 99 - -3 4289 4286 4083 204 201 -1.48 0 - 0 0 - 99 0 +2 3722 4040 4330 606 288 -3.99 0 - 0 - - 99 - 0006 -2 4360 4357 1244 3114 3111 14.18 99 - - - - 99 - +3 4068 4089 4364 294 273 1.18 0 - - 0 - 99 - +2 4346 4421 4546 198 123 -8.19 0 - 0 - - 99 0 +2 4739 4766 4969 228 201 3.58 0 - 0 - - 99 - +3 4920 4956 5090 168 132 -4.52 0 - - 0 - 99 - +2 5072 5111 5305 231 192 -3.40 0 - 0 - - 99 - +1 5224 5263 5424 198 159 -6.35 0 0 - - - 99 0 0007 -2 5428 5377 4397 1029 978 7.57 99 - - - - 99 - -2 5866 5824 5687 177 135 0.23 0 - - 0 - 0 99 0008 +3 5544 5610 5897 351 285 -0.57 99 - - 99 - - - +1 5782 5809 5958 174 147 -7.08 0 0 - - - - 99 0009 -3 6176 6131 5664 510 465 7.31 99 - - - - - 99 0010 +1 5962 5977 6183 219 204 -0.75 99 99 0 - - - - 0011 +2 5954 6071 6250 294 177 -3.18 99 - 99 - - - - 0012 -2 6373 6355 6128 243 225 8.59 99 - - - - 99 - 0013 -1 6693 6693 6442 249 249 -5.67 99 - 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- 0 - - 99 0035 +3 15546 15618 15749 201 129 -0.69 99 - - 99 - - - 0036 +1 15643 15658 15789 144 129 4.29 99 99 - - - - - 0037 +2 15716 15734 15871 153 135 3.79 99 - 99 - - - - 0038 -2 16105 15916 15779 324 135 -2.21 99 - - - - 99 - -2 16249 16234 16106 141 126 -2.08 0 - - 99 - 0 0 +1 16312 16324 16464 150 138 -1.39 0 0 - 99 - - 0 -2 16522 16489 16358 162 129 -0.80 0 - - 99 - 0 0 0039 +3 15912 15924 16601 687 675 13.67 99 - - 99 - - - 0040 -2 16768 16744 16523 243 219 1.09 99 - - - - 99 0 -3 16850 16367 16083 765 282 2.11 0 - - 99 - - 0 +2 16934 16958 17152 216 192 -7.05 0 - 0 99 - - - -3 17744 17324 17064 678 258 -4.56 0 - - 99 - - 0 +2 17693 17762 17956 261 192 -4.10 0 - 0 99 - - 0 -3 18236 17927 17745 489 180 -1.31 0 - 0 99 - - 0 -3 18380 18380 18237 141 141 -4.34 0 - - 99 - - 0 0041 +3 16608 16614 18980 2370 2364 9.65 99 - - 99 - - - -2 19087 18850 18716 369 132 1.76 0 - - 99 0 0 0 0042 -3 19223 19091 18681 540 408 -0.03 99 - - - - - 99 -2 19477 19417 19286 189 129 -2.11 0 - - 99 - 0 0 +1 19402 19441 19569 165 126 -5.28 0 0 - 99 - - - -2 19864 19831 19649 213 180 -1.82 0 - - 99 - 0 0 0043 +3 18981 19020 19922 939 900 9.48 99 - - 99 - - - -3 19967 19907 19536 429 369 -2.13 0 - - 99 - - 0 0044 -2 20212 20152 20027 183 123 0.81 45 - 54 - 0 45 - 0045 +3 20343 20388 20528 183 138 1.04 99 - - 99 - - - -1 20799 20799 20674 123 123 -13.15 0 - - - 0 99 - 0046 -2 20926 20893 20492 432 399 5.66 99 - - - - 99 - 0047 +3 20808 20826 20972 162 144 -0.81 99 - - 99 - - - +3 20973 20994 21143 168 147 -1.87 0 - - 0 - - 99