Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QROI010000031.946.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QROI010000031.946.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QROI010000031.946.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QROI010000031.946.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 1 13 144 141 129 -1.21 0 0 - - 99 - - +3 138 141 302 162 159 -9.05 0 0 - 0 99 - - +1 145 187 318 171 129 0.68 0 0 - - 99 - - 0001 -1 639 588 379 258 207 -6.34 56 - - - 56 - 43 +1 475 517 669 192 150 -8.57 0 0 99 - - - 0 +2 464 539 679 213 138 5.01 0 - 0 - - 99 0 0002 -3 755 455 294 459 159 -1.93 99 - - - - - 99 +3 693 693 884 189 189 -0.19 0 - 0 0 0 99 - -1 900 774 640 258 132 -13.89 0 - - - 0 99 - +1 778 823 975 195 150 -5.82 0 0 0 - - 99 - +3 915 972 1112 195 138 4.46 0 - 0 0 - 99 0 +2 680 905 1117 435 210 0.67 0 - 0 - - 99 - 0003 -2 1135 1123 536 597 585 13.15 99 - - - - 99 - +3 1113 1353 1484 369 129 1.04 0 0 - 0 - 99 0 +3 1485 1503 1643 156 138 4.25 0 - 0 0 - 99 0 -3 1661 1598 1242 417 354 -4.77 0 - - - - 99 0 0004 -2 1672 1672 1136 534 534 8.91 99 - - - - 99 - +2 1736 1808 1999 261 189 -2.99 0 - 0 - 99 0 - -2 2107 1945 1697 408 246 -9.49 0 - - - 99 0 - +3 2268 2319 2561 291 240 0.48 0 - - 0 - - 99 +1 2458 2479 2685 225 204 -2.46 0 0 - - 0 - 99 0005 -3 2825 2723 1887 936 834 8.68 99 - - - - - 99 +3 2562 3045 3203 639 156 -0.44 0 - - 0 - 99 - -1 3399 3387 3223 174 162 -0.61 0 - - - 0 99 - +1 3436 3586 3729 291 141 -7.42 0 0 - - - 99 - -1 3786 3786 3661 123 123 -2.18 0 - 0 - 0 99 - 0006 -2 4102 4057 2738 1362 1317 11.06 99 - - - - 99 - 0007 +2 3929 3935 4198 267 261 0.34 99 - 99 - - - - -1 4323 4272 4144 177 126 -3.95 0 - - 99 0 - 0 0008 -3 4541 4379 4095 444 282 -0.26 99 - - - - - 99 +1 4414 4438 4560 144 120 -4.39 0 0 - 99 - - - 0009 +3 4134 4152 4754 618 600 4.40 99 - - 99 - - - 0010 -2 4858 4822 4700 156 120 4.22 44 0 55 - - 44 - +1 4660 4702 4989 327 285 -6.80 0 0 99 - - - - -2 5077 5026 4859 216 165 -5.72 0 - 99 - - 0 - 0011 +2 4637 4679 5149 510 468 5.22 99 - 99 - - - - 0012 +3 5118 5124 5273 153 147 3.08 99 - - 99 - - 0 -3 5402 5255 5121 279 132 -1.67 0 - - 99 - - 0 +3 5274 5400 5525 249 123 -6.43 0 - - 0 - 99 - +2 5456 5480 5611 153 129 -1.33 0 - 0 - - 99 0 -3 5624 5579 5403 219 174 -9.60 0 - - - - 99 0 +3 5646 5664 5786 138 120 3.50 0 - - 0 - 99 0 -1 5973 5952 5824 147 126 -6.69 0 - 0 - 0 99 0 +2 5759 5849 5980 219 129 1.71 0 - 0 - - 99 0 -3 5984 5792 5625 357 165 -5.43 0 - - - - 99 0 -3 6227 6212 5985 240 225 -12.04 0 - - - - 99 0 +3 6123 6126 6269 144 141 -1.52 0 - - 0 - 99 - -1 6279 6279 6157 120 120 -8.97 0 - 0 - 0 99 - +2 6308 6311 6553 243 240 -2.87 0 - 0 - - 99 0 0013 -2 6577 6529 5162 1413 1365 9.39 99 - - - - 99 - -3 6623 6557 6300 321 255 -5.26 0 - - - - 99 0 +2 6638 6722 6868 228 144 -11.77 0 - 0 3 - - 96 +3 6648 6729 7292 642 561 2.65 0 - - 0 - - 99 -2 7393 7372 7232 159 138 -2.42 0 0 - - - 0 99 +1 6814 6886 7476 660 588 0.44 0 0 - - - - 99 +2 7364 7400 7588 222 186 -8.74 0 - 0 - - - 99 +3 7566 7644 8057 489 411 3.66 0 - - 0 - - 99 +1 7873 7936 8205 330 267 0.30 0 0 - - - - 99 +2 8081 8114 8269 186 153 -3.33 0 - 0 - - - 99 -2 8410 8410 8243 165 165 -4.31 0 - - - - 0 99 +1 8368 8374 8511 141 135 -3.42 0 0 - 0 - - 99 +1 8512 8512 8661 147 147 -2.50 0 0 - 0 - - 99 +1 8662 8665 8832 168 165 -2.19 0 0 - 0 - - 99 +3 8358 8724 8855 495 129 1.98 5 - - 5 - 0 94 -2 8887 8851 8669 216 180 -2.23 0 - - 0 - 0 99 +2 8966 8978 9103 135 123 -10.39 0 - 0 - - - 99 +3 9081 9108 9242 159 132 -0.39 0 - - 0 - - 99 0014 -3 9290 9269 6651 2637 2616 7.66 99 - - - - - 99 0015 +2 9323 9350 9484 159 132 0.10 97 - 97 - 0 2 - +2 9485 9503 9652 165 147 -4.52 0 99 0 - 0 - 0 -3 9683 9683 9495 186 186 -3.21 0 99 - - 0 - 0 0016 -1 9711 9609 9253 456 354 -3.95 99 - - - 99 - - -1 9924 9885 9712 210 171 2.27 0 99 - - 0 - - -2 10045 9928 9791 252 135 -8.31 0 99 - - 0 0 - -1 10239 10116 9925 312 189 1.40 0 99 - - 0 - - 0017 +1 9382 9403 10368 984 963 10.40 99 99 - - - - - -1 10620 10617 10468 150 147 -0.40 0 99 - - 0 - - 0018 +1 10369 10375 10731 360 354 8.39 99 99 - - - - - 0019 -1 10812 10785 10621 189 162 -2.46 99 - - - 99 - - +2 10751 10949 11110 357 159 -1.22 0 - 0 0 - 99 - +3 10884 11037 11201 315 162 0.32 0 - - 0 - 99 - +1 11107 11119 11265 156 144 -10.72 0 0 0 - - 99 0 +3 11202 11238 11366 162 126 0.84 0 - 0 0 - 99 - +2 11111 11318 11452 339 132 2.05 0 - 0 - - 99 - 0020 -2 11458 11443 10796 660 645 10.41 99 - - - - 99 - +3 11751 11757 11912 159 153 0.42 0 - - 0 - - 99 +1 11896 11956 12090 192 132 2.94 0 0 - - 0 - 99 +1 12091 12097 12225 132 126 1.84 0 0 - 0 - - 99 +3 12021 12087 12500 477 411 4.73 0 - - 0 - - 99 0021 -3 12530 12518 11478 1050 1038 12.13 99 - - - - - 99 +2 12398 12602 12730 330 126 -2.05 0 - 0 - - - 99 -1 12834 12768 12628 204 138 -3.83 0 - - - 0 - 99 +2 12731 12731 12868 135 135 -5.81 0 - 0 0 - - 99 +3 12735 12855 13082 345 225 -1.05 0 - - 0 0 - 99 +1 12889 12961 13191 300 228 1.59 0 0 - - 0 - 99 -2 13279 13222 13067 210 153 -6.21 0 - - - - 0 99 +3 13083 13251 13400 315 147 4.29 1 - - 1 - - 98 0022 -3 13415 13388 12531 882 855 9.65 99 - - - - - 99 0023 -3 13805 13631 13494 309 135 1.80 99 - - - - - 99 0024 -2 13933 13918 13757 174 159 1.46 99 - 0 - - 99 - -3 14450 14435 14196 252 237 -1.38 0 - - 99 - 0 0 -2 14467 14344 13934 531 408 2.86 0 - - 99 - 0 - 0025 +3 13773 13785 14471 696 684 11.38 99 - - 99 - - - -1 14718 14664 14458 258 204 -2.49 0 - 99 - 0 - - -2 14746 14686 14468 276 216 2.67 0 - 99 - 0 0 - -2 15124 14950 14747 375 201 -1.24 0 - 99 - - 0 - 0026 +2 14447 14477 15142 693 663 8.25 99 - 99 - - - - +3 15039 15048 15182 141 132 -2.06 0 - - 0 33 - 65 0027 -3 15203 15167 14925 276 240 -5.99 99 - - - - - 99 0028 +1 15139 15145 15603 462 456 6.74 99 99 - - 0 - - 0029 -1 15726 15420 15043 681 375 0.85 99 - - - 99 - - 0030 +3 15597 15612 15761 162 147 2.70 99 - - 99 - - - 0031 +2 15626 15677 15946 318 267 2.27 99 - 99 - - - - +3 16059 16098 16232 171 132 4.08 1 - - 1 - 98 0 +2 16163 16268 16396 231 126 -10.78 0 - 0 - - 99 0 +2 16397 16412 16624 225 210 1.33 0 - 0 - - 99 0 -3 16694 16565 16410 282 153 -6.56 0 - 0 - - 99 0 +3 16827 16866 17009 180 141 -5.83 0 - 0 0 - 99 - -3 17042 17018 16878 162 138 -7.12 0 - 0 - - 99 0 +2 16667 16685 17227 558 540 2.02 0 - 0 - - 99 - +3 17010 17055 17264 252 207 -0.88 0 - - 0 - 99 - -1 17379 17355 17203 174 150 -13.03 0 - - - 0 99 - -1 17592 17577 17455 135 120 -5.85 0 - 0 - 0 99 0 +2 17294 17465 17614 318 147 -0.85 0 - 0 - - 99 - 0032 -2 17617 17596 15692 1923 1902 10.48 99 - - - - 99 - 0033 -1 17784 17766 17593 189 171 -2.95 99 - - - 99 - - 0034 -2 17875 17788 17618 255 168 -0.72 92 - - - 7 92 - 0035 +2 17639 17642 17953 312 309 9.38 99 - 99 - - - - -1 17958 17949 17812 144 135 -0.19 0 - 99 - 0 - - 0036 +1 17941 17950 18294 351 342 8.83 99 99 - - - - - +3 18300 18333 18566 264 231 -3.33 0 99 - 0 - - - -3 18785 18707 18567 216 138 2.09 0 99 - - - - 0 -1 18933 18924 18691 240 231 0.03 0 99 - - 0 - - +3 18855 18954 19133 276 177 -8.52 0 99 - 0 - - - 0037 +1 18295 18319 19335 1038 1014 10.50 99 99 - - - - - +2 19202 19220 19348 144 126 -5.29 0 - 0 - 99 - 0 0038 -3 19595 19388 19152 441 234 -1.65 99 - - - - - 99 +2 19703 19820 19969 264 147 -0.91 0 - 0 - - 99 - 0039 -2 20251 20233 19322 927 909 10.94 99 - - - - 99 -