Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRML010000131.888.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRML010000131.888.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRML010000131.888.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRML010000131.888.AOI_01 Sequence length = 14628 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 623 620 411 210 207 0.25 0 99 - - 0 - 0 0001 +1 1 70 933 930 861 11.04 99 99 - - - - - -1 933 558 367 564 189 -2.06 0 99 - - 0 - - 0002 +2 758 773 985 225 210 -5.64 99 - 99 - - - - 0003 +1 1189 1225 1365 174 138 -3.15 99 99 - - - - - +2 1313 1325 1474 159 147 -3.78 0 - 0 - 99 - - +1 1462 1474 1635 171 159 2.65 0 0 - 0 99 - - +3 1356 1497 1811 453 312 -11.17 0 - - 0 99 - - +2 1898 1913 2059 159 144 -0.32 0 0 0 0 99 - - +3 1917 1932 2075 156 141 -11.90 0 0 - 0 99 - - +2 2123 2156 2344 219 186 -1.82 0 0 0 - 99 - - -3 2633 2534 2400 231 132 -4.46 0 0 - - 99 - 0 0004 +1 1831 2134 2754 921 618 -0.50 0 0 - - 99 - - +3 2742 2769 2927 183 156 -11.05 0 0 - 0 99 - - +1 2755 2767 2982 225 213 -1.90 0 0 - - 99 - - -3 3125 3014 2787 336 225 -5.17 0 - - - 99 - 0 +3 3009 3075 3203 192 126 -14.58 0 0 - 0 99 0 - +1 2983 3100 3252 267 150 1.48 0 0 - - 99 0 - +1 3253 3283 3429 174 144 0.33 0 0 0 - 99 - - +2 3287 3299 3433 144 132 0.76 0 - 0 - 99 - - +2 3473 3488 3667 192 177 0.35 0 - 0 - 99 - - -3 3758 3758 3627 129 129 -8.36 0 - - 0 99 - 0 +3 3585 3591 3794 207 201 -9.64 0 - - 0 99 - - -2 4087 4084 3962 123 120 -10.52 0 0 - - 99 0 - -3 4166 4136 4014 150 120 -8.86 0 0 - - 99 - 0 -2 4294 4291 4088 204 201 -2.10 0 0 0 - 99 0 - +1 3727 4045 4335 606 288 -2.84 0 0 - - 99 - - 0005 -1 4365 4323 1249 3114 3072 9.01 99 - - - 99 - - +2 4073 4094 4369 294 273 0.90 0 - 0 - 99 - - +1 4351 4501 4743 390 240 -3.25 0 0 - - 99 - - +1 4756 4771 5070 312 297 1.54 0 0 - - 99 - - +2 4925 4952 5095 168 141 -0.13 0 - 0 - 99 - - +1 5077 5116 5259 180 141 -1.43 0 0 - - 99 - - 0006 -1 5427 5376 4402 1023 972 8.50 99 - - - 99 - - +1 5782 5809 5958 174 147 -6.73 0 0 - - - - 99 0007 -3 6176 6131 5664 510 465 11.01 99 - - - - - 99 0008 +1 5962 5977 6183 219 204 -0.31 99 99 - - - - - 0009 +2 6089 6101 6250 159 147 -4.17 99 - 99 - - - - 0010 -2 6373 6361 6128 243 231 6.45 99 - - - - 99 - 0011 -1 6693 6693 6442 249 249 -2.19 99 - - - 99 - - +1 6631 6640 6906 273 264 -5.57 0 0 99 - - - 0 -3 6920 6812 6627 291 183 -9.53 0 0 99 - - - 0 -2 7129 7027 6860 267 165 -1.04 0 - 99 - - 0 - -2 7741 7723 7487 252 234 0.60 0 - 99 - - 0 - 0012 +2 6512 6554 7804 1290 1248 9.46 99 - 99 - - - - 0013 +1 7783 7801 7941 156 138 -2.64 66 66 - - - 33 - 0014 -2 8017 7984 7742 273 240 -3.65 99 - - - - 99 - -2 8761 8317 8018 741 297 0.62 0 - 99 - - 0 - 0015 +2 7862 7871 8839 975 966 6.90 99 - 99 - - - - -1 8850 8787 8620 228 165 -3.36 0 - 99 - 0 - - +2 8918 9116 9307 387 189 0.49 0 - 0 - 99 - - 0016 -1 9351 9348 8923 426 423 13.27 99 - - - 99 - - +2 9308 9485 9613 303 126 1.40 0 - 0 - - 99 - 0017 -2 10075 9997 9332 741 663 10.06 99 - - - - 99 - +1 9982 10015 10182 198 165 3.90 0 0 - - 99 - - +1 10183 10330 10470 285 138 0.96 0 0 - - 99 - - +2 10349 10511 10642 291 129 -4.51 0 0 0 0 99 - - +1 10471 10489 10653 180 162 -4.06 0 0 - - 99 - - +3 10515 10581 10709 192 126 -3.98 0 - - 0 99 - - -2 10759 10744 10592 165 150 -4.27 0 - - - 99 0 - +1 10669 10678 10818 147 138 -2.88 0 0 - - 99 - - -3 11009 11009 10812 195 195 -6.50 0 - - - 99 - 0 +2 10871 10880 11056 183 174 -1.09 0 0 0 - 99 - - +1 10819 10849 11076 255 225 1.89 0 0 - - 99 - - 0018 -1 11184 11148 9994 1188 1152 10.53 99 - - - 99 - - +2 11057 11063 11188 129 123 -1.83 0 - 0 - 99 - - +2 11189 11207 11338 147 129 0.63 0 0 0 - 99 - - +1 11161 11194 11805 642 609 0.24 0 0 - - 99 - - -3 12035 11996 11865 168 129 -5.13 0 0 - - 99 - 0 +1 11869 11914 12126 255 210 0.87 0 0 - - 99 - - 0019 -1 12177 12162 11185 990 975 12.98 99 - - - 99 - - 0020 +3 12165 12165 12368 201 201 -0.05 99 - - 99 - - - +1 12511 12547 12669 156 120 -1.91 0 0 - 0 - - 99 +3 12369 12522 12722 351 198 -0.54 0 - - 0 - - 99 -2 12856 12844 12710 144 132 -11.85 0 - - - - 0 99 +3 12729 12831 13097 366 264 -0.08 0 - - 0 - - 99 0021 -3 13277 13238 12168 1107 1068 9.63 99 - - - - - 99 +2 13265 13295 13447 180 150 -2.07 0 0 0 - 99 - - +1 13219 13324 13509 288 183 -3.93 0 0 - - 99 - - 0022 -1 13917 13911 13261 654 648 9.10 99 - - - 99 - - 0023 +2 13793 13844 13996 201 150 -0.39 99 - 99 - - - - -2 14473 14416 14273 198 141 0.74 1 98 - - - 1 - -3 14495 14447 14286 207 159 -4.36 0 99 - - - 0 0 0024 +1 14143 14170 14580 435 408 5.72 99 99 - - - - -