Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRJS010000121.842.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRJS010000121.842.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRJS010000121.842.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRJS010000121.842.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 2 14 145 141 129 -1.89 0 - 0 - - 99 - +1 139 142 303 162 159 -9.63 0 0 0 - - 99 - +2 146 188 319 171 129 0.62 0 - 0 - - 99 - -3 536 500 336 198 162 -7.87 0 - - - 99 - 0 0001 -2 640 589 380 258 207 -5.84 80 - - - 19 80 - +2 476 518 670 192 150 -8.78 0 - 0 99 0 - - +3 465 540 680 213 138 5.17 0 - - 0 0 - 99 0002 -1 756 456 295 459 159 -2.72 99 - - - 99 - - +1 694 694 885 189 189 -0.82 0 0 - 0 - 0 99 -2 901 775 641 258 132 -12.42 0 - - - - 0 99 +2 779 824 976 195 150 -6.67 0 - 0 0 - - 99 +1 916 928 1113 195 183 3.22 0 0 - 0 - - 99 +3 681 906 1118 435 210 0.21 0 - - 0 - - 99 0003 -3 1136 1124 537 597 585 13.00 99 - - - - - 99 +1 1114 1354 1485 369 129 1.01 0 0 0 - 0 - 99 +1 1486 1504 1644 156 138 4.33 0 0 - 0 0 - 99 -1 1662 1599 1243 417 354 -4.54 0 - - - 0 - 99 0004 -3 1673 1673 1137 534 534 8.72 99 - - - - - 99 +3 1737 1740 1892 153 150 -9.14 0 - - 0 - 99 - 0005 +2 1823 1856 1999 174 141 -3.27 16 - 16 - 72 10 - 0006 -2 2107 1945 1652 453 291 -1.54 99 - - - - 99 - +3 2268 2319 2561 291 240 0.66 0 - - 0 - - 99 +1 2458 2479 2685 225 204 -4.70 0 0 - - - - 99 0007 -3 2825 2723 1887 936 834 7.89 99 - - - - - 99 +3 2562 3045 3203 639 156 -0.76 0 - - 0 - 99 - -1 3399 3387 3223 174 162 -1.01 0 - - - 0 99 - +1 3436 3586 3729 291 141 -6.67 0 0 - - - 99 - -1 3786 3786 3601 183 183 -1.74 0 - - - 0 99 - 0008 -2 4102 4057 2738 1362 1317 10.79 99 - - - - 99 - 0009 +2 3929 3935 4198 267 261 0.69 99 - 99 - - - - -1 4323 4272 4144 177 126 -3.22 0 - - 98 0 - 1 0010 -3 4541 4379 4095 444 282 -0.23 99 - - - - - 99 +1 4414 4438 4560 144 120 -4.20 0 0 - 99 - - - 0011 +3 4134 4152 4754 618 600 4.46 99 - - 99 - - - -1 4767 4713 4561 204 150 -2.00 0 - - 99 0 - - 0012 -2 4858 4822 4700 156 120 3.84 48 0 51 - - 48 - +1 4660 4702 4989 327 285 -7.04 0 0 99 - - - - -2 5077 5026 4859 216 165 -4.74 0 - 99 - - 0 - 0013 +2 4637 4679 5149 510 468 4.82 99 - 99 - - - - 0014 +3 5118 5124 5273 153 147 2.86 99 - - 99 - - 0 -3 5402 5255 5121 279 132 -1.38 0 - - 99 - - 0 +3 5274 5400 5525 249 123 -6.87 0 - - 0 - 99 - +2 5456 5480 5611 153 129 -1.02 0 - 0 - - 99 0 -3 5624 5579 5403 219 174 -9.33 0 - 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0 - - 99 +3 8358 8724 8855 495 129 1.78 5 - - 5 - 0 94 -2 8887 8851 8669 216 180 -2.39 0 - - 0 - 0 99 +2 8966 8978 9103 135 123 -10.49 0 - 0 - - - 99 +3 9081 9108 9242 159 132 0.07 0 - - 0 - - 99 0016 -3 9290 9269 6651 2637 2616 7.66 99 - - - - - 99 0017 +2 9323 9338 9484 159 144 0.35 98 - 98 - 0 1 - +2 9485 9503 9652 165 147 -5.63 0 99 0 - 0 - 0 -3 9683 9683 9495 186 186 -3.85 0 99 - - 0 - 0 0018 -1 9711 9609 9253 456 354 -4.20 99 - - - 99 - - -1 9924 9885 9712 210 171 2.43 0 99 - - 0 - - -2 10045 9928 9791 252 135 -8.72 0 99 - - 0 0 - -1 10239 10116 9925 312 189 1.15 0 99 - - 0 - - 0019 +1 9382 9403 10368 984 963 10.48 99 99 - - - - - -1 10620 10617 10468 150 147 -0.31 0 99 - - 0 - - 0020 +1 10369 10375 10731 360 354 8.01 99 99 - - - - - 0021 -1 10770 10764 10621 147 141 -0.47 99 - - - 99 - - +3 10740 10938 11099 357 159 -0.98 0 0 - 0 - - 99 +1 10873 11026 11190 315 162 -0.09 0 0 - - - - 99 +2 11096 11108 11254 156 144 -11.36 0 - 0 0 0 - 99 +1 11191 11227 11355 162 126 -0.19 0 0 - 0 - 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- 0 - - 99 0032 -3 17606 17585 15681 1923 1902 10.73 99 - - - - - 99 0033 -2 17773 17755 17582 189 171 -3.25 99 - - - - 99 - 0034 -3 17864 17777 17607 255 168 -0.01 99 - - - - 0 99 0035 +3 17628 17631 17942 312 309 8.91 99 - - 99 - - - -2 17947 17938 17801 144 135 0.15 0 - - 99 - 0 - 0036 +2 17930 17939 18283 351 342 8.84 99 - 99 - - - - +1 18289 18322 18555 264 231 -4.57 0 0 99 - - - - -1 18774 18696 18556 216 138 2.48 0 - 99 - 0 - - -2 18925 18913 18680 243 231 0.37 0 - 99 - - 0 - 0037 +2 18284 18308 19324 1038 1014 10.63 99 - 99 - - - - 0038 +3 19227 19263 19433 204 168 -1.13 94 - - 94 5 - - 0039 -1 19584 19377 19141 441 234 -1.83 99 - - - 99 - - +2 19652 19727 19873 219 144 -8.71 0 - 0 0 - - 99 +3 19692 19809 19958 264 147 0.41 0 - - 0 - - 99 +3 19977 19992 20120 141 126 -2.06 0 - - 0 - - 99 0040 -3 20252 20222 19311 939 909 10.85 99 - - - - - 99