Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRJS010000061.788.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRJS010000061.788.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRJS010000061.788.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRJS010000061.788.AOI_01 Sequence length = 21146 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 378 267 82 294 183 -4.08 0 99 - - 0 0 - 0001 +1 1 13 408 405 393 3.64 99 99 - - - 0 - +2 470 503 625 153 120 -1.79 0 - 0 99 - - 0 -3 851 602 318 531 282 -2.17 0 - - 99 - 0 0 0002 +3 270 366 929 657 561 5.67 99 - - 99 - - - 0003 +1 754 769 981 225 210 -4.92 99 99 - - - - - 0004 +3 1185 1221 1361 174 138 -0.80 99 - - 99 - - - +1 1309 1348 1470 159 120 -2.63 0 0 0 - - - 99 +3 1458 1470 1703 243 231 0.39 0 - 0 0 - - 99 +2 1352 1493 1807 453 312 -8.44 0 - 0 - - - 99 +1 1894 1894 2055 159 159 -1.48 0 0 - 0 - - 99 +2 1913 1928 2071 156 141 -8.69 0 - 0 0 - - 99 +1 2119 2191 2340 219 147 -3.43 0 0 - 0 - - 99 -2 2629 2596 2396 231 198 -2.36 0 - - 0 - 0 99 0005 +3 1746 2130 2750 1002 618 -2.63 0 - - 0 - - 99 +2 2738 2765 2923 183 156 -7.81 0 - 0 - - - 99 -2 3121 3010 2783 336 225 -6.28 0 - - - - 0 99 +2 3005 3071 3199 192 126 -7.78 0 - 0 0 - - 99 +3 2979 3096 3248 267 150 2.99 0 - - 0 - - 99 +3 3249 3279 3425 174 144 -1.25 0 0 - 0 - - 99 +1 3283 3295 3429 144 132 -2.82 0 0 - - - - 99 +1 3469 3484 3663 192 177 -1.61 0 0 - - - - 99 +2 3581 3587 3790 207 201 -5.59 0 - 0 - - - 99 -1 4083 4080 3958 123 120 -8.96 0 - - 0 0 - 99 -2 4162 4132 4010 150 120 -7.86 0 - - 0 - 0 99 -1 4290 4287 4084 204 201 -0.71 0 0 - 0 0 - 99 +3 3723 4041 4331 606 288 -3.78 0 - - 0 - - 99 0006 -3 4361 4358 1245 3114 3111 5.59 99 - - - - - 99 +1 4069 4180 4365 294 183 1.33 0 0 - - - - 99 0007 +3 4347 4347 4547 198 198 -1.56 99 - - 99 - - - +3 4740 4767 4970 228 201 1.00 0 - - 0 - - 99 +1 4921 4957 5091 168 132 -5.87 0 0 - - - - 99 +3 5073 5112 5306 231 192 -2.35 0 - - 0 - - 99 +2 5225 5264 5425 198 159 -3.13 0 - 0 - 0 - 99 0008 -3 5429 5378 4398 1029 978 5.71 99 - - - - - 99 -3 5867 5825 5688 177 135 1.31 0 0 - - 99 - 0 0009 +1 5545 5611 5898 351 285 -1.24 99 99 - - - - - +2 5783 5810 5959 174 147 -5.46 0 - 0 - 99 - - 0010 -1 6177 6132 5665 510 465 10.00 99 - - - 99 - - 0011 +2 5963 5978 6184 219 204 -0.28 99 - 99 0 - - - 0012 +3 5955 6057 6251 294 192 -2.49 99 - - 99 - - - 0013 -3 6374 6362 6129 243 231 7.79 99 - - - - - 99 0014 -2 6694 6694 6443 249 249 -2.87 99 - - - - 99 - -1 6846 6816 6628 216 186 -6.74 0 - - 99 0 - - -3 7130 7028 6861 267 165 -4.06 0 - - 99 - - 0 -2 7162 7156 7025 135 129 -9.28 0 - - 99 - 0 - -3 7742 7724 7488 252 234 -1.42 0 - - 99 - - 0 0015 +3 6501 6555 7805 1302 1248 10.04 99 - - 99 - - - 0016 +2 7784 7802 7942 156 138 1.83 96 - 96 - - - 3 0017 -3 8018 7985 7743 273 240 -2.65 99 - - - - - 99 -3 8762 8153 8019 741 132 -5.65 0 - - 99 - - 0 0018 +3 7863 7872 8840 975 966 11.17 99 - - 99 - - - -2 8851 8788 8621 228 165 -5.18 0 - - 99 - 0 - 0019 -1 9072 9057 8890 180 165 2.71 99 - - - 99 - - +2 8915 8927 9097 180 168 -0.83 0 - 0 0 - 99 - +3 8919 9090 9308 387 216 0.89 0 - - 0 - 99 - 0020 -2 9352 9349 8924 426 423 11.70 99 - - - - 99 - 0021 +3 9309 9315 9533 222 216 0.79 99 - - 99 - - - 0022 -3 10121 9998 9333 786 663 8.58 99 - - - - - 99 +3 10350 10512 10643 291 129 -7.25 0 0 0 0 - 99 - +2 9983 10016 10654 669 636 -0.96 0 - 0 - - 99 - +1 10516 10561 10710 192 147 -5.12 0 0 - - - 99 - 0023 -3 10760 10745 10593 165 150 -2.28 39 - - - - 60 39 +2 10670 10679 10819 147 138 -3.64 0 - 0 - - 99 - -1 11034 11010 10813 219 195 -6.61 0 - - - 0 99 - +3 10872 10932 11057 183 123 -2.10 0 - 2 0 - 97 - +2 10820 10850 11077 255 225 2.10 2 - 2 - - 97 - 0024 -2 11215 11206 9995 1218 1209 3.31 99 - - - - 99 - +1 11191 11191 11340 147 147 1.36 0 0 - 0 - - 99 -2 11584 11569 11447 135 120 -2.33 0 - - 0 - 0 99 0025 +3 11058 11142 11807 747 663 0.90 99 - - 99 - - - -2 12037 11998 11867 168 129 -4.51 0 - - 22 - 0 77 +3 11871 11916 12128 255 210 1.05 0 - - 0 - - 99 0026 -3 12179 12164 11187 990 975 6.91 99 - - - - - 99 0027 +2 12167 12167 12298 129 129 -2.64 86 - 86 13 - - - +2 12371 12377 12502 129 123 -3.55 0 - 0 - - 99 - +3 12513 12549 12671 156 120 -2.76 0 - 0 0 - 99 - +2 12503 12524 12724 219 198 -3.64 0 - 0 - - 99 - -1 12858 12744 12619 237 123 -9.53 0 - - - 0 99 - +2 12731 12764 12919 186 153 -4.41 0 - 0 - - 99 - 0028 -2 13246 13240 12170 1074 1068 7.57 99 - - - - 99 - 0029 +1 13084 13243 13509 423 264 -4.82 99 99 - - - - - +2 13265 13385 13525 258 138 -1.80 0 - 0 - 99 - - 0030 -1 13917 13911 13261 654 648 8.39 99 - - - 99 - - 0031 +2 13793 13844 13996 201 150 3.69 99 - 99 - - - - 0032 +3 13884 13884 14024 138 138 0.23 83 - - 83 - 16 - -2 14473 14416 14273 198 141 1.97 0 99 - - - 0 - -3 14495 14447 14286 207 159 -0.74 0 99 - - - 0 0 0033 +1 14143 14170 14748 603 576 11.72 99 99 - - - - - +1 14935 14941 15084 147 141 -2.17 0 0 - - - 99 - +1 15148 15157 15288 138 129 -4.50 0 0 - - - 99 - -3 15425 15404 15273 150 129 -0.41 0 - - - - 99 0 +3 15282 15282 15524 240 240 2.86 0 - - 0 - 99 - 0034 -1 15936 15933 15796 138 135 4.06 21 - - - 21 78 - +2 15824 15848 15976 150 126 0.78 1 - 1 - - 98 - +3 16146 16254 16625 477 369 0.93 0 - - 0 - 99 - +2 16364 16367 16675 309 306 -1.44 0 - 0 - - 99 - -1 16827 16824 16633 192 189 -1.12 0 - - - 0 99 - +3 16887 16887 17024 135 135 2.46 3 - - 3 - 96 0 -3 17066 16982 16854 210 126 -6.61 0 0 - - - 99 0 0035 -2 17272 17200 14807 2463 2391 6.08 99 - - - - 99 - 0036 +1 17284 17299 17430 144 129 7.16 99 99 - - - - - -2 18106 18076 17930 174 144 1.20 0 - 99 - - 0 - +3 18099 18138 18329 228 189 0.88 0 - 99 0 - - - -1 18411 18399 18193 216 204 1.22 0 - 99 - 0 - - 0037 +2 17558 17582 18667 1107 1083 12.42 99 - 99 - - - - -3 19118 19106 18900 216 204 -4.88 0 - - 99 - - 0 -1 19212 19164 18994 216 168 -0.63 0 - - 99 0 - - -1 19389 19365 19213 174 150 -1.04 0 - - 99 0 - - -3 19661 19598 19470 189 126 -5.14 0 - - 99 - - 0 -3 19883 19814 19692 189 120 -3.70 0 - - 99 - - 0 0038 +3 18699 18792 20399 1698 1605 10.18 99 - - 99 - - - 0039 -2 20410 20404 20234 174 168 1.13 99 - - - - 99 - -1 21144 21078 20803 339 273 -1.80 0 - 99 - 0 - -