Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRHQ010000061.722.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRHQ010000061.722.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/NZ_QRHQ010000061.722.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_plebeius.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRHQ010000061.722.AOI_01 Sequence length = 20252 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 1 187 372 369 183 0.24 0 0 - 0 0 - 99 +3 60 93 428 366 333 2.99 0 - - 0 0 - 99 -1 462 459 79 381 378 -4.10 0 - - - 0 - 99 +2 467 596 736 267 138 -0.70 0 - 0 - - 99 0 -3 857 758 579 276 177 -10.18 0 - - - - 99 0 +3 936 1029 1160 222 129 0.17 0 - - 0 - 99 0 +1 1345 1390 1518 171 126 -10.11 0 0 - - - 99 0 -3 1532 1463 1263 267 198 -7.45 0 - - - - 99 0 +2 1496 1577 1732 234 153 1.40 0 - 0 - - 99 0 0001 -2 1996 1894 404 1590 1488 10.38 99 - - - - 99 - 0002 +2 1748 1841 2068 318 225 -0.22 99 - 99 - - - - +1 1939 1945 2121 180 174 0.75 0 0 - - 99 - - +2 2069 2147 2275 204 126 1.70 0 - 0 - 99 - - +2 2276 2429 2590 312 159 -0.43 0 0 0 - 99 - - +3 2454 2505 2633 177 126 -11.29 0 0 - 0 99 - - +1 2410 2626 2769 357 141 5.99 0 0 - - 99 - - 0003 -1 2835 2799 1909 924 888 12.33 99 - - - 99 - - +2 2858 2858 2998 138 138 -5.54 0 - 0 0 - 99 - +3 2832 3078 3203 369 123 -3.41 0 - - 0 - 99 - -1 3399 3375 3223 174 150 0.66 0 - - - 0 99 - +1 3436 3586 3729 291 141 -9.26 0 0 - - - 99 - -1 3786 3786 3661 123 123 -3.34 0 - 0 - 0 99 - +2 3929 3935 4198 267 261 2.36 0 - 0 - - 99 - 0004 -2 4213 4057 2828 1383 1227 11.48 99 - - - - 99 - -1 4323 4272 4144 177 126 0.33 0 - - 99 0 - - -3 4550 4379 4188 360 189 2.42 0 - - 99 - - 0 +2 4529 4595 4810 279 213 -3.63 0 - 0 99 - - - -3 4853 4823 4698 153 123 4.49 5 - - 94 - - 5 -3 5078 5027 4854 222 171 -5.69 0 - - 99 - - 0 -1 5085 5082 4894 189 186 -10.40 0 - - 99 0 - 0 0005 +3 4134 4152 5150 1014 996 8.66 99 - - 99 - - - 0006 +1 5119 5125 5274 153 147 4.63 99 99 - - 0 - - -1 5403 5256 5122 279 132 0.16 0 99 - - 0 - - +1 5275 5401 5526 249 123 -4.01 2 2 - - - - 97 +1 5647 5665 5787 138 120 4.93 6 6 - - 0 - 93 -1 5961 5637 5404 555 231 -5.48 0 - - - 0 - 99 -2 5974 5965 5825 147 138 -8.78 0 - - 0 0 0 99 +3 5760 5850 5981 219 129 2.94 0 - - 0 - - 99 -1 6228 6213 6064 162 147 -11.63 0 - - - 0 - 99 0007 +1 6124 6127 6270 144 141 0.65 41 41 - 2 - 0 56 -2 6280 6262 6116 162 144 -14.37 0 - - 0 - 0 99 0008 -3 6578 6530 5166 1410 1362 4.17 99 - - - - - 99 0009 +3 6285 6312 6590 303 276 -0.87 99 - - 99 - - - 0010 +1 6430 6499 6627 195 126 0.76 99 99 - - - - - +3 6666 6729 7292 624 561 3.02 0 - - 0 - - 99 -2 7393 7372 7232 159 138 -2.67 0 0 - - - 0 99 +1 6787 6886 7476 687 588 0.95 0 0 - - - - 99 -1 7698 7623 7498 198 123 -15.29 0 - 0 - 0 - 99 +2 7364 7493 7705 339 210 -5.28 0 - 0 - - - 99 +3 7542 7644 8162 618 516 3.29 0 - - 0 - - 99 +1 7873 7936 8205 330 267 0.41 0 0 - - - - 99 +2 8081 8147 8269 186 120 -5.88 0 - 0 - - - 99 -2 8410 8410 8243 165 165 -6.72 0 - - - - 0 99 +1 8368 8374 8511 141 135 -4.92 0 0 - 20 - - 79 +1 8512 8512 8661 147 147 -2.21 0 0 - 0 - - 99 +1 8662 8665 8832 168 165 -0.02 0 0 - 0 - - 99 -2 8914 8881 8669 243 210 -1.74 0 - - 0 - 0 99 +3 8358 8802 8981 621 177 4.37 0 - - 0 - - 99 +2 8966 8978 9103 135 123 -11.31 0 - 0 - - - 99 0011 -3 9290 9266 6651 2637 2613 8.14 99 - - - - - 99 0012 +2 9323 9350 9484 159 132 -0.12 95 - 95 - 0 4 - 0013 -1 9603 9402 9253 348 147 -1.74 99 - - - 99 - - +2 9485 9503 9652 165 147 -3.60 0 99 0 - - - 0 -3 9683 9617 9495 186 120 1.44 0 99 0 0 - - 0 +2 9767 9815 9940 171 123 -9.88 0 99 0 - 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99 - 0 0 - -3 15788 15740 15594 192 144 -3.33 0 - 99 - - - 0 -2 16039 16021 15776 261 243 0.05 0 - 99 - - 0 - +3 16128 16131 16277 147 144 2.61 0 - 99 0 - 0 - 0024 +2 14879 14921 16282 1401 1359 7.34 99 - 99 - - - - -2 16282 16255 16124 156 129 3.76 0 - 99 0 - 0 - 0025 -1 16560 16545 16384 174 159 1.68 99 0 - - 99 - - -2 17077 17062 16823 252 237 -0.84 0 - 99 - 0 0 - -1 17094 17028 16561 531 465 3.43 0 - 99 - 0 - - 0026 +2 16400 16412 17098 696 684 6.79 99 - 99 - - - - -1 17298 17229 17095 201 132 -0.96 0 99 - - 0 - 0 -3 17345 17291 17085 258 204 -3.81 0 99 - - - - 0 -1 17751 17577 17374 375 201 -0.75 0 99 - - 0 - - 0027 +1 17074 17104 17769 693 663 10.62 99 99 - - - - - +2 17666 17675 17806 138 129 -2.61 0 - 0 - - 25 74 -2 17830 17662 17522 306 138 -13.02 0 99 - - 0 0 - 0028 +3 17766 17772 18230 462 456 12.15 99 - - 99 - - 0 0029 -3 18239 18047 17670 567 375 0.31 99 - - - - - 99 +2 18458 18503 18628 168 123 -10.10 0 - 0 0 - - 99 +3 18231 18468 18632 399 162 1.54 0 - - 0 - - 99 +1 18688 18727 18861 171 132 1.71 0 0 - - 0 - 99 +3 18792 18897 19025 231 126 -8.59 0 - - 0 0 - 99 -1 19263 19194 19033 228 159 -7.31 0 - - 0 0 - 99 +1 19456 19495 19638 180 141 -8.25 0 0 - 0 - - 99 -1 19671 19647 19507 162 138 -7.15 0 - - 0 0 - 99 0030 +3 19026 19041 19856 828 813 1.48 0 - - 0 - - 99 +1 19714 19744 19893 177 147 -3.02 0 0 - - - - 99 -2 20008 19984 19832 174 150 -11.83 0 - - - - 0 99 +3 19923 20094 20243 318 147 -1.44 0 - - 0 - - 99 0031 -3 20246 20225 18321 1923 1902 11.66 99 - - - - - 99