Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ovatus.result/NZ_JABWDH0100000011.2918.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ovatus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ovatus.result/NZ_JABWDH0100000011.2918.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ovatus.result/NZ_JABWDH0100000011.2918.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ovatus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JABWDH0100000011.2918.AOI_01 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 2 8 172 168 162 9.54 99 - 99 - - - - 0002 -1 387 273 106 279 165 6.42 99 - - - 99 - - -2 508 499 374 132 123 -0.03 0 - 99 0 - 0 - +3 357 384 512 153 126 -5.14 0 - 99 0 - 0 - -1 549 549 421 126 126 1.57 0 - 99 - 0 - - 0003 +2 269 281 1123 852 840 8.56 99 - 99 - - - - +3 1293 1299 1427 132 126 -6.20 0 99 - 0 - - - 0004 +1 1180 1201 1434 252 231 4.77 99 99 - - - - - 0005 -1 1629 1539 1399 228 138 -4.63 99 - - - 99 - - +2 1469 1622 1783 312 159 -3.93 0 - 0 - - 99 - -1 1830 1830 1702 126 126 -4.89 0 - - 0 0 99 - +3 1953 2043 2171 216 126 -1.32 0 - 0 0 - 99 - +2 1784 2063 2308 522 243 -1.52 0 - 0 - - 99 - +3 2172 2187 2312 138 123 2.06 0 0 - 0 - 99 - +1 2152 2245 2370 216 123 -0.41 0 0 - - - 99 0 +2 2309 2354 2476 165 120 -3.85 0 - 0 - 0 99 - -1 2502 2439 2290 210 147 -3.46 0 - - - 0 99 - 0006 -2 2554 2551 1403 1149 1146 10.58 99 - - - - 99 - 0007 -3 2591 2579 2457 132 120 1.15 99 - - - - - 99 0008 +1 2596 2602 2757 159 153 -2.71 99 99 - - - - - -1 2868 2796 2626 240 168 1.21 0 - 99 - 0 - - -1 3180 3156 3007 171 147 3.13 0 - 99 - 0 0 - +3 3165 3171 3299 132 126 -6.51 0 - 99 0 - - - -1 3498 3456 3259 237 195 0.97 0 - 99 - 0 - - -2 3724 3694 3527 195 165 3.50 0 - 99 - - 0 - 0009 +2 2609 2657 3739 1128 1080 9.54 99 - 99 - - - - 0010 -3 4460 4394 4188 270 204 3.31 28 71 - - - - 28 -2 4621 4621 4424 195 195 0.18 0 99 - - - 0 - -1 4803 4794 4672 129 120 6.56 9 90 - - 9 - - +2 4844 4922 5116 270 192 -1.33 0 99 0 - - - - -1 5211 5163 4939 270 222 3.69 0 99 - - 0 - - 0011 +1 4192 4210 5235 1041 1023 9.86 99 99 - - - - - -3 5585 5525 5382 201 141 -10.45 0 - 99 - - - 0 -1 5844 5667 5536 306 129 1.66 0 - 99 - 0 - - -2 5944 5938 5768 174 168 1.70 0 - 99 - - 0 - -1 6327 6327 6196 129 129 -0.92 0 - 99 - 0 - - 0012 +2 5228 5270 6343 1113 1071 10.39 99 - 99 - - - - 0013 -2 6547 6469 6215 330 252 -0.64 99 - - - - 99 - 0014 -3 6689 6689 6534 153 153 4.31 99 - - - - - 99 -2 6928 6862 6737 189 123 -3.22 0 99 - - - 0 0 -3 6959 6959 6690 267 267 2.20 0 99 - - - - 0 -1 7128 7119 6745 381 372 -1.28 0 99 - - 0 - - +2 7193 7292 7417 222 123 -5.13 0 99 0 - 0 - - -1 7428 7389 7162 264 225 2.19 0 99 - - 0 - - +2 7433 7454 7576 141 120 -4.01 0 99 0 - 0 - - -3 7817 7769 7605 210 162 2.62 0 99 - - - - 0 0015 +1 6574 6607 7863 1287 1254 9.74 99 99 - - - - - +3 7896 7911 8036 138 123 -4.89 0 99 - 0 - - 0 -3 8108 8108 7881 225 225 5.59 0 99 - - - - 0 -1 8358 8337 8176 180 159 0.78 0 99 0 - 0 - - +2 8180 8240 8362 180 120 -5.81 0 99 0 - 0 - - -1 8643 8505 8359 282 144 -4.87 0 99 - - 0 - - -1 8832 8772 8644 186 126 1.46 0 99 - - 0 - - 0016 +1 7885 7897 8853 966 954 11.87 99 99 - - - - - 0017 -3 8894 8885 8703 189 180 1.38 99 - - - - - 99 +2 8867 9026 9163 294 135 -1.87 0 - 0 - 99 - - 0018 -1 9315 9297 8887 426 408 8.08 99 - - - 99 - - +1 9760 9781 9915 153 132 0.12 0 0 - 0 - - 99 +3 9501 9855 9980 477 123 -6.10 0 - 0 0 - - 99 0019 -3 10013 10001 9294 717 705 10.35 99 - - - - - 99 -1 10305 10305 10171 132 132 -1.42 0 0 0 - 0 99 - +1 10120 10162 10371 249 207 -0.01 0 0 0 - - 99 - +2 10097 10100 10468 369 366 1.19 0 - 0 - - 99 - -1 11067 11067 10927 138 138 -6.71 0 - 0 - 0 99 - 0020 -2 11152 11149 9992 1158 1155 11.90 99 - - - - 99 - 0021 +2 10712 10916 11230 516 312 -0.29 99 - 99 - - - - +1 11245 11248 11391 144 141 1.41 0 0 - 0 - - 99 +3 11439 11679 11816 375 135 -6.35 0 0 - 0 - - 99 +1 11596 11671 11853 255 180 0.69 0 0 - - - - 99 +3 11817 11850 12065 246 213 -0.34 0 - - 0 - - 99 -2 12163 12127 11921 240 204 -7.88 0 - - - - 0 99 0022 -3 12224 12215 11241 981 972 12.11 99 - - - - - 99 0023 +3 12066 12066 12239 171 171 -1.80 99 - - 99 - - - +3 12240 12267 12428 186 159 -0.44 0 - 0 0 - 99 - +3 12561 12576 12725 162 147 -4.24 0 - 0 0 - 99 - -1 12762 12747 12598 162 147 -6.05 0 - 0 - 0 99 - +2 12221 12341 12772 549 429 -0.28 0 - 0 - - 99 - +1 12718 12736 12870 150 132 -5.39 0 0 - - - 99 - 0024 -2 13300 13285 12212 1086 1071 11.10 99 - - - - 99 - 0025 +2 12779 12902 13315 534 411 -1.00 99 - 99 - - - - +2 13541 13640 13768 225 126 2.50 0 0 0 - 99 - - +1 13624 13837 13980 354 141 1.51 0 0 0 - 99 - - +2 13841 13901 14032 189 129 2.55 0 - 0 - 99 - - 0026 -1 14178 13971 13312 864 657 13.03 99 - - - 99 - - 0027 +1 14026 14029 14184 156 153 1.50 99 99 - 0 - - - 0028 -3 14246 14237 14049 195 186 5.03 99 - - - - - 99 0029 -1 14367 14358 14218 147 138 3.37 99 - - - 99 - - 0030 +3 14298 14322 14480 180 156 -4.52 99 - - 99 - - - 0031 -2 14509 14494 14336 171 156 2.04 99 - - - - 99 - 0032 -2 15007 14956 14615 390 339 2.67 99 - - - - 99 - 0033 +2 14666 14687 15253 585 564 12.83 99 - 99 - - - - 0034 -3 15320 15314 15186 132 126 -2.74 99 - - - - - 99 0035 -2 15448 15448 15311 135 135 1.00 96 - - 3 - 96 - 0036 +3 15246 15255 15560 312 303 -1.16 99 - - 99 - - - +3 15711 15726 16019 306 291 2.34 0 - - 0 - - 99 +1 15856 15877 16053 195 174 -3.35 0 0 - - - - 99 +3 16020 16332 16499 477 165 -3.73 0 - - 0 - - 99 +3 16554 16581 16715 159 132 4.48 0 - - 0 0 - 99 0037 -3 16727 16724 15324 1401 1398 13.03 99 - - - - - 99 0038 +1 16732 16795 16968 234 171 -1.08 99 99 - - - - - +2 16892 16991 17119 225 126 2.29 0 - 0 0 - 99 - +3 16995 17001 17168 171 165 -0.79 0 - - 0 - 99 - -1 17331 17298 17140 189 156 -5.32 0 - - - 0 99 - +1 17575 17683 17940 363 255 -2.27 0 0 - - - 99 - +3 17826 17883 18005 177 120 5.67 0 - - 0 - 99 - -1 18312 18309 18181 129 126 -0.45 0 - - - 0 99 - 0039 -3 18587 18581 18405 180 174 10.58 99 - - - - 0 99 0040 -2 18604 18565 16886 1716 1677 8.74 99 - - - - 99 - -2 18952 18919 18779 171 138 1.26 7 - - 92 - 7 - -3 19223 19214 19074 147 138 -1.35 0 - - 99 - - 0 -3 19421 19355 19224 195 129 0.20 0 - - 99 - - 0 -3 19784 19724 19473 309 249 0.21 0 - - 99 - - 0 -1 20121 20112 19966 153 144 -3.29 0 - - 99 0 - - -1 20292 20256 20122 168 132 -3.73 0 - - 99 0 - - +1 20167 20185 20352 183 165 1.78 0 0 - 99 - 0 - -2 20377 20335 20147 228 186 -3.30 0 - - 99 - 0 - 0041 +3 18465 18525 20579 2112 2052 5.03 99 - - 99 - - - 0042 -1 20883 20868 20680 201 186 3.62 99 - - - 99 - - -1 21051 21048 20923 126 123 -5.42 0 - 99 - 0 0 - -2 21127 21082 20855 270 225 -0.30 0 - 99 - - 0 -