Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_nordii.result/NZ_JH7243141.3.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_nordii.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_nordii.result/NZ_JH7243141.3.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_nordii.result/NZ_JH7243141.3.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_nordii.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_JH7243141.3.AOI_01 Sequence length = 20177 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 3 15 296 291 279 8.43 0 - - 0 - 99 - -1 438 435 274 162 159 -5.56 0 - 0 - 0 99 - +2 224 386 520 294 132 -3.43 0 - 0 0 - 99 - +3 297 492 635 336 141 -2.33 0 - - 0 - 99 - 0001 +3 750 786 908 156 120 -1.92 99 - - 99 - - - 0002 +2 926 947 1111 183 162 2.54 99 - 99 - 0 - - 0003 -1 1143 1083 892 249 189 -4.25 99 - - - 99 - - -3 1220 1130 999 219 129 -5.34 1 - - - 98 - 1 0004 -2 1273 1261 1124 147 135 1.91 99 - - - - 99 - 0005 -3 1367 1352 1221 144 129 -4.01 94 - 5 - - - 94 -3 1559 1499 1368 189 129 -10.15 0 - 0 - - 99 0 +1 1411 1447 1569 156 120 0.04 0 0 0 - - 99 - +2 1202 1340 1573 369 231 1.01 0 - 0 - - 99 - +3 1548 1590 1745 195 153 -2.85 0 0 - 0 - 99 - -1 2001 1971 1828 171 141 -2.25 0 - 0 - 0 99 - +2 1664 1778 2110 444 330 1.84 0 - 0 - - 99 - 0006 -2 2224 2212 1274 948 936 9.80 99 - - - - 99 - 0007 +3 2229 2229 2447 216 216 -1.00 99 - - 99 - - - +2 2504 2552 2686 180 132 0.54 0 - 0 - 99 - - +1 3166 3172 3417 249 243 1.62 0 0 - - 99 - - 0008 -1 3459 3432 2440 1017 990 9.89 99 - - - 99 - - 0009 +2 3296 3473 3622 324 147 -8.95 99 - 99 - - - - +3 3882 3927 4049 165 120 3.45 0 - - 0 0 99 - -1 4068 4059 3886 180 171 -2.88 0 - - - 0 99 - +2 3947 4043 4195 246 150 1.57 0 - 0 - - 99 - +3 4062 4086 4238 174 150 1.01 0 - - 0 - 99 - -3 4403 4337 4215 186 120 -8.38 0 - - - - 99 0 0010 -2 4453 4399 3530 921 867 9.36 99 - - - - 99 - +2 4430 4433 4675 243 240 -2.76 0 99 0 - - - - 0011 +1 4423 4426 4920 495 492 2.50 99 99 - - - - - +3 4779 4788 4943 162 153 3.49 0 - - 0 99 - - +1 5161 5170 5340 177 168 -4.94 0 0 0 - 99 - - +2 5090 5291 5413 321 120 3.02 0 - 0 - 99 - - -3 5744 5735 5592 150 141 -9.89 0 - 0 - 99 - 0 +2 5558 5618 5794 234 174 2.17 0 - 0 - 99 - - +2 5795 5795 5938 141 141 4.54 0 - 0 - 99 0 - -3 6134 6092 5946 186 144 1.89 0 - - - 99 - 0 +1 6073 6082 6231 156 147 -0.25 0 0 - - 99 - - +2 6101 6191 6388 285 195 3.63 0 - 0 - 99 - - -3 6950 6860 6726 222 132 -8.79 0 0 - - 99 - 0 +1 6661 6838 6963 300 123 -4.93 0 0 - - 99 - - +1 6964 6973 7119 153 144 -1.94 0 0 - - 99 - - 0012 -1 7176 7155 4504 2670 2649 10.49 99 - - - 99 - - 0013 +1 7120 7120 7308 186 186 2.55 99 99 - - - - - 0014 -2 7357 7339 7205 150 132 -0.23 99 - - - - 99 - +2 7331 7394 7528 195 132 -2.88 0 99 0 - - - - -3 7631 7595 7443 186 150 -1.51 0 99 - - 0 - 0 -1 7818 7554 7405 411 147 1.61 0 99 - - 0 - - -1 8346 8346 7819 525 525 1.73 0 99 - - 0 - - -3 8498 8435 8277 219 156 -0.35 0 99 - - - - 0 -1 8871 8748 8428 441 318 -1.58 0 99 - - 0 - - 0015 +1 7324 7339 8880 1554 1539 12.17 99 99 - - - - - +1 8971 8977 9114 141 135 -8.38 0 0 - 99 - - 0 -3 9137 9050 8922 213 126 -3.55 0 - - 99 - - 0 0016 +3 8889 8892 9527 636 633 9.85 99 - - 99 - - - 0017 -2 9673 9562 9407 264 153 -1.13 99 - - - - 99 - -2 10111 10084 9956 153 126 -1.19 0 - 99 - - 0 - 0018 +2 9665 9791 10198 531 405 3.70 99 - 99 - - - - -3 10739 10733 10584 153 147 2.73 0 99 - - - - 0 -1 11151 11103 10903 246 198 -3.04 0 99 - - 0 - - -3 11261 11204 11046 213 156 -7.62 0 99 - - - - 0 -3 11462 11405 11262 198 141 1.37 0 99 - - - - 0 -1 11604 11601 11368 234 231 3.83 0 99 - - 0 - - 0019 +2 11735 11849 11971 234 120 2.30 13 86 13 - - - - -1 12630 12126 11980 648 144 2.14 0 99 - - 0 - - 0020 +1 10321 10336 13014 2691 2676 9.43 99 99 - - - - - +3 13329 13344 13487 156 141 -5.47 0 99 - 0 0 - - -1 13587 13521 13291 294 228 -1.02 0 99 - - 0 - - +3 13620 13668 13793 171 123 -0.16 0 99 - 0 0 - - -3 13877 13877 13734 141 141 -0.02 0 99 - - 0 - 0 -1 13890 13821 13588 300 231 -3.62 0 99 - - 0 - - -1 14232 14145 13891 339 252 -0.90 0 99 - - 0 - - +2 14114 14114 14239 123 123 -3.98 0 99 0 - - - 0 -3 14324 14225 14100 222 123 -4.58 0 99 - - 0 - 0 -3 14540 14507 14385 153 120 -2.13 0 99 - - 0 - 0 -2 14620 14569 14438 180 129 -2.25 0 99 - - 0 0 - -1 14703 14697 14317 384 378 -2.25 0 99 - - 0 - - 0021 +1 13165 13171 14715 1548 1542 11.27 99 99 - - - - - -3 15146 15101 14976 168 123 -4.44 0 99 - - - - 0 -1 15210 15141 14989 219 150 -0.79 0 99 - - 0 - 0 +3 15417 15417 15572 153 153 -3.25 0 99 - 0 0 - - -1 15783 15429 15304 477 123 2.85 0 99 - - 0 0 - +2 15671 15752 15889 216 135 -7.29 0 99 0 - - - - -2 15976 15937 15797 177 138 -6.24 0 99 - - - 0 - +2 15890 15890 16012 120 120 -6.86 0 99 0 - - - - -1 16164 16140 15934 228 204 3.01 0 99 - - 0 - - 0022 +1 14716 14737 16248 1530 1509 11.24 99 99 - - - - - -1 16671 16617 16483 186 132 -6.48 0 - - 99 0 - 0 +2 16553 16658 16780 225 120 0.17 0 - 0 99 - 0 0 0023 +3 16242 16263 16784 540 519 10.50 99 - - 99 - - - -3 16799 16445 16275 522 168 0.89 0 - - 99 - - 0 0024 -2 16846 16795 16583 261 210 1.17 99 - - - - 99 0 0025 +2 16781 16787 16939 156 150 3.26 99 - 99 - - - - 0026 -2 17020 17017 16847 171 168 6.90 99 - - - - 99 - +1 16981 16987 17220 237 231 -4.60 0 0 99 - - - - 0027 +2 16961 16994 17581 618 585 8.64 99 - 99 - - - - -2 17602 17158 17021 579 135 -5.56 0 0 99 - - 0 - 0028 +2 17594 17618 17806 210 186 -1.09 99 - 99 - - - - -2 17860 17803 17660 198 141 2.29 0 - 0 99 - 0 - +1 17941 18016 18141 198 123 -6.67 0 0 - 99 - - 0 -3 18251 18023 17766 483 255 -2.40 0 - - 99 - - 0 -3 18560 18476 18336 222 138 -1.21 0 - - 99 - - 0 -1 18609 18549 18418 189 129 -3.98 0 - - 99 0 - 0 -1 18777 18762 18610 165 150 -2.57 0 - - 99 0 - 0 +1 18646 18679 18831 183 150 -7.20 0 0 - 99 - - 0 -3 18875 18752 18561 312 189 -2.06 0 - - 99 - - 0 +2 18797 18851 18982 183 129 -7.46 0 - 0 99 - - - -3 19142 19112 18957 183 153 1.55 0 - - 99 - 0 0 -2 19153 19048 18926 225 120 2.79 0 - - 99 - 0 - 0029 +3 17664 17676 19157 1491 1479 11.05 99 - - 99 - - - +1 19462 19477 19620 156 141 -4.11 0 0 99 - - - 0 0030 -3 19661 19601 19422 237 177 -4.66 99 - - - - - 99 -1 19848 19836 19714 132 120 3.95 1 - 98 - 1 - - -2 20176 20119 19904 270 213 -1.15 0 - 99 - - 0 - -1 20175 20154 19963 210 189 4.14 0 - 99 - 0 0 -