Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/NZ_HG7260271.17.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/NZ_HG7260271.17.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/NZ_HG7260271.17.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_HG7260271.17.AOI_01 Sequence length = 21023 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +3 3 9 131 126 120 -3.67 0 - 98 0 - 1 - -1 276 264 88 186 174 2.18 0 - 99 - 0 - - +1 172 178 330 156 150 -2.07 0 0 99 - - 0 - -2 373 310 128 243 180 1.14 0 - 99 - - 0 - +3 738 753 878 138 123 -0.04 4 - 95 4 - - - -1 927 918 763 162 153 -3.29 0 - 99 - 0 - - -1 1260 1173 991 267 180 0.08 0 - 99 - 0 0 - -2 1357 1276 809 546 465 -1.91 0 - 99 - - 0 - 0001 +2 2 11 1444 1440 1431 5.78 99 - 99 - - - - -1 1770 1767 1645 123 120 -2.05 0 99 - - 0 - - +2 2105 2111 2236 129 123 1.47 0 99 0 - - - 0 -3 2294 2213 2070 222 141 1.70 0 99 - - - - 0 -3 2510 2432 2301 207 129 -4.31 0 99 - - - - 0 0002 +1 1468 1480 2616 1146 1134 9.90 99 99 - - - - - -1 2883 2844 2617 264 225 5.65 0 - 99 - 0 - - -2 2947 2932 2663 282 267 -0.50 0 - 99 - - 0 - -2 3565 3538 3383 180 153 -1.94 0 - 99 - - 0 - -1 4023 3999 3754 267 243 2.65 0 - 99 - 0 - - -2 4072 4006 3863 207 141 0.92 0 - 99 - 0 0 - 0003 +2 2612 2642 4087 1473 1443 10.89 99 - 99 - - - - 0004 -2 4306 4294 4142 162 150 5.95 99 - - - - 99 - -1 4527 4506 4354 171 150 -5.03 0 - - 99 0 - - +2 4502 4505 4648 144 141 -6.85 0 - 0 99 - - 0 -2 4753 4699 4565 186 132 -3.88 0 - - 99 - 0 0 -3 4886 4538 4365 519 171 -3.98 0 - - 99 - - 0 +1 4891 4969 5115 222 144 1.09 0 0 - 99 - - 0 -3 5144 5054 4887 255 165 -2.05 0 0 - 99 - - 0 +1 5257 5272 5394 135 120 0.86 0 0 - 99 - - 0 -2 5920 5833 5711 207 120 -3.56 0 - - 99 - 0 0 -3 5972 5543 5253 717 288 0.87 0 - - 99 - - 0 -1 6009 6003 5881 126 120 -11.57 0 - - 99 0 - - -3 6224 6149 6027 195 120 -2.13 0 - - 99 - - 0 -1 6294 6237 6109 183 126 -2.35 0 - - 99 0 - - -2 6361 6361 6218 141 141 -0.24 0 - 0 99 - 0 - +2 6218 6254 6394 174 138 -0.70 0 - 0 99 - - 0 0005 +3 4152 4152 6491 2337 2337 5.11 99 - - 99 - - - -3 6506 6452 6246 258 204 -4.91 0 - - 99 - - 0 0006 +1 6313 6379 6510 195 129 4.55 96 96 - - - - 3 0007 -2 6676 6664 6536 138 126 2.28 99 - - - - 99 - 0008 -3 7145 7115 6873 270 240 3.78 99 - - - - - 99 +3 7329 7395 7559 228 162 -3.43 0 - 22 0 - 76 - -2 7717 7633 7340 375 291 -1.72 0 - 99 - - 0 - +3 7560 7581 7748 186 165 -0.49 0 - 99 0 - - - +3 7869 7881 8027 156 144 -6.36 0 - 99 0 - 0 - -2 8122 7852 7718 402 132 -2.33 0 - 99 - - 0 - 0009 +2 7136 8399 8566 1428 165 2.56 96 - 96 - - - 3 -2 8578 8563 8435 141 126 -3.19 0 - 65 - - 0 34 0010 -3 8582 8582 8304 276 276 -3.51 99 - - - - - 99 0011 +1 8578 8605 8973 393 366 6.49 99 99 - - - - - 0012 +1 8974 9022 9165 189 141 7.19 99 99 - - - - 0 0013 -3 9311 9284 8970 339 312 3.41 99 - - - - - 99 -2 9802 9787 9662 138 123 -0.84 0 - 99 - - 0 - 0014 +2 9644 9650 9823 177 171 6.79 99 - 99 - - - - 0015 +3 9774 9777 9926 150 147 -1.73 99 - - 99 - - - -1 10176 10170 10015 159 153 -1.03 0 99 - - 0 - 0 -3 10220 10214 9993 225 219 2.69 0 99 - - - - 0 0016 +1 9988 10000 11424 1434 1422 12.15 99 99 - - - - - 0017 +2 11255 11267 11437 180 168 3.64 99 - 99 - - - - 0018 -3 11756 11732 11607 147 123 1.01 99 - - - - - 99 +1 11965 11968 12126 159 156 1.56 5 5 94 - - - - -2 12190 12109 11987 201 120 -1.97 0 7 92 - - 0 0 0019 +2 11741 11744 12232 489 486 6.08 99 - 99 - - - - -2 13012 13006 12881 129 123 0.47 0 - 99 - - 0 - 0020 +2 12380 12383 13093 711 708 13.60 99 - 99 - - - - 0021 -3 13304 13232 13074 228 156 -1.01 99 - - - - - 99 0022 +3 13089 13119 13424 333 303 10.10 99 - - 99 - - - -3 13571 13553 13425 144 126 0.76 0 - 99 - - - 0 +3 13449 13455 13616 165 159 -1.33 0 - 99 0 - 0 - -2 13681 13564 13442 237 120 -1.10 0 - 99 - - 0 0 -1 13692 13692 13546 144 144 -0.02 0 - 99 - 0 - - +3 13617 13641 13763 144 120 1.35 0 - 99 0 - - - -2 14038 14026 13802 234 222 -0.66 0 - 99 - - 0 - +3 13824 13836 14042 216 204 1.22 0 - 99 0 - 0 - 0023 +2 13409 13421 14137 726 714 10.73 99 - 99 - - - - -3 14159 14132 13962 195 168 -2.37 0 - 99 - - - 0 0024 +1 14173 14191 14316 141 123 1.30 99 99 - - - - - +3 14199 14388 14534 333 144 -0.89 0 0 - 0 - - 99 +2 14525 14546 14677 150 129 -10.08 0 - 0 - 0 - 99 +1 14791 14851 14979 186 126 -2.90 0 0 - - - - 99 0025 -3 15008 14993 14253 753 738 6.53 99 - - - - - 99 +2 14924 15095 15361 435 264 -2.46 7 - 7 - - 92 - +1 15208 15298 15471 261 171 -1.77 0 0 - - - 99 - -1 15585 15573 15430 153 141 -2.10 0 - 0 - 0 99 - +2 15362 15395 15613 249 216 -0.57 0 - 0 - - 99 - +2 15704 15707 15952 246 243 -4.56 0 - 0 - - 99 - 0026 +2 15953 15971 16168 213 195 0.58 30 - 30 - - 69 - 0027 +1 16288 16303 16449 159 144 7.02 99 99 - - 0 0 - -1 16467 16341 16171 294 168 -0.66 4 - - - 4 95 - 0028 -2 16600 16561 15005 1593 1554 1.66 99 - - - - 99 - 0029 +3 16593 16653 16832 237 177 1.42 99 - - 99 - - - 0030 -3 17078 17027 16824 252 201 4.69 99 - - - - - 99 0031 -1 17118 17067 16861 255 204 9.97 99 - - - 99 - 0 0032 +2 17000 17030 17245 243 213 0.35 99 - 99 - - - - +3 17196 17235 17372 174 135 4.50 0 - - 0 - - 99 +1 17272 17281 17424 150 141 4.45 0 0 - - - - 99 +2 17420 17468 17680 258 210 -0.10 0 - 0 - - - 99 +1 17488 17518 17712 222 192 3.21 0 0 - - - - 99 +1 17926 17965 18216 288 249 6.23 0 0 - - - - 99 0033 -3 18362 18317 17079 1281 1236 11.32 99 - - - - - 99 0034 -1 18585 18558 18430 153 126 -7.16 99 - - - 99 - - 0035 -3 18680 18635 18498 180 135 7.88 99 - - - - - 99 -3 18845 18842 18681 162 159 -2.45 0 - 99 - 0 - 0 0036 +2 18590 18617 18919 327 300 6.77 99 - 99 - - - - 0037 -1 19038 18924 18640 396 282 0.48 99 - - - 99 - - -3 19055 19055 18921 132 132 0.04 0 99 - - - - 0 -3 19385 19268 19110 273 156 1.64 0 99 - - - - 0 0038 +1 18880 18916 19482 600 564 7.99 99 99 - - - - - -1 19491 19317 19177 312 138 -7.25 0 99 - - 0 - 0 0039 -3 19562 19559 19392 168 165 -0.62 99 - - - - - 99 -2 20098 19960 19718 378 240 -5.65 0 - 99 - - 0 - -3 20288 20270 20103 183 165 -5.10 0 - 99 - - - 0 +3 20205 20205 20351 144 144 -6.11 0 - 99 0 - - - +3 20352 20355 20501 147 144 -1.47 1 - 98 1 - - - -2 20695 20587 20462 231 123 -2.53 8 - 91 - - 8 - -2 21016 20869 20696 318 171 -3.12 0 - 99 - 0 0 -