Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/NZ_HG7260191.16.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/NZ_HG7260191.16.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/NZ_HG7260191.16.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_neonati.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_HG7260191.16.AOI_01 Sequence length = 14644 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 486 477 295 189 180 -3.87 0 - - 99 0 - - +1 517 637 780 261 141 -5.23 0 0 - 99 - - 0 -3 1037 545 414 621 129 2.84 0 - - 99 - - 0 -1 1197 1146 1000 195 144 -5.06 0 - - 99 0 - - -2 1384 1381 1253 129 126 -2.37 0 - - 99 - 0 0 0001 +3 102 135 1424 1320 1287 7.87 99 - - 99 - - - -3 1442 1370 1221 219 147 1.54 0 - - 99 - - 0 +1 1753 1831 2112 357 279 -1.16 0 0 - - 99 - - -2 2668 2605 2399 267 204 -5.14 0 - - - 99 0 - 0002 -1 2673 2661 1570 1101 1089 7.56 99 - - - 99 - - 0003 +3 2523 2592 2756 231 162 1.27 99 - - 99 - - - -1 2979 2955 2827 150 126 0.55 0 - 0 - 0 99 - +2 2819 2840 3073 252 231 -0.73 0 - 0 - - 99 - 0004 -2 3193 3193 2696 495 495 6.02 99 - - - - 99 - 0005 +2 3278 3278 3454 174 174 2.09 99 - 99 - - - - +3 4020 4068 4208 186 138 1.15 0 - - 0 - 99 - +2 4241 4244 4522 279 276 -1.33 0 - 0 - - 99 - +1 4438 4510 4647 207 135 -5.13 0 0 - - - 99 - 0006 -2 4777 4765 3302 1473 1461 9.23 99 - - - - 99 - +2 5306 5309 5461 153 150 4.73 3 - 3 - - - 96 -2 5605 5569 5438 165 129 -1.05 0 - - - - 0 99 -2 5767 5746 5624 141 120 -3.10 0 0 - - - 0 99 0007 -3 5981 5933 4800 1179 1131 9.04 99 - - - - - 99 0008 +3 5868 5874 6014 144 138 5.23 99 - - 99 - - - 0009 -2 6064 6040 5897 165 141 -3.46 99 - - - - 99 - +1 6262 6337 6477 213 138 0.02 0 0 - - 99 - - +3 6378 6390 6518 138 126 -1.54 0 - - 0 99 - - -3 6797 6752 6621 174 129 1.27 0 - - - 99 - 0 -3 7433 7400 7236 195 162 -8.16 0 0 - 0 99 - 0 +3 7227 7446 7601 372 153 -5.63 0 0 - 0 99 - - +1 7033 7564 7701 666 135 0.10 0 0 - - 99 - - 0010 -1 7824 7812 6058 1764 1752 10.18 99 - - - 99 - - 0011 -2 8038 8020 7883 153 135 -1.34 99 - - - - 99 - 0012 -2 8242 8227 8087 153 138 -5.58 99 - - - - 99 - 0013 +1 8113 8113 8379 264 264 1.42 99 99 - - - - - +2 8120 8168 8383 261 213 0.31 0 - 0 - 99 - - +3 8439 8439 8600 159 159 -3.20 0 - - 0 99 - - -3 8687 8597 8472 213 123 -6.42 0 - - 0 99 - 0 -3 8849 8849 8688 159 159 -11.74 0 0 0 - 99 - 0 +2 8591 8675 8869 276 192 -2.69 0 0 0 - 99 - - +1 8506 8719 8880 372 159 -4.28 0 0 - - 99 - - +2 8912 8936 9064 150 126 -4.09 0 - 0 - 99 - - +2 9077 9206 9331 252 123 -5.31 0 0 0 0 99 - - -3 9422 9413 9279 141 132 -9.67 0 0 - 0 99 - 0 +3 9081 9303 9527 444 222 -11.10 0 0 - 0 99 - - +2 9455 9491 9625 168 132 -7.44 0 0 0 - 99 0 - -2 9655 9592 9455 198 135 -11.88 0 0 0 - 99 0 - +1 8989 9301 9732 741 429 -1.33 0 0 - - 99 - - -3 9749 9743 9600 147 141 -6.98 0 - - - 99 - 0 +2 9626 9647 9772 144 123 -6.12 0 - 0 - 99 - - +1 9733 9826 10038 303 210 -3.89 0 0 - - 99 0 - -2 10087 10018 9740 345 276 -8.68 0 0 - - 99 0 - 0014 -1 10362 10347 8137 2223 2208 8.27 99 - - - 99 - - +2 10121 10199 10366 243 165 -0.75 0 - 0 - 99 - - -3 10778 10748 10611 165 135 -6.21 0 0 - - 99 0 0 -2 10786 10678 10490 294 186 -4.61 0 0 - - 99 0 - +1 10351 10684 10854 501 168 1.41 0 0 0 - 99 - - +2 10688 10724 10861 171 135 2.71 0 - 0 - 99 - - +2 10940 11003 11152 210 147 1.06 0 - 0 - 99 - - +1 11074 11554 11676 600 120 5.68 0 0 - - 99 - - +1 11677 11743 11868 189 123 1.29 0 0 0 - 99 - - +2 11747 11747 11905 156 156 1.68 0 - 0 - 99 - - 0015 -1 11928 11925 10372 1554 1551 10.67 99 - - - 99 - - 0016 +3 11754 11853 11981 225 126 1.65 98 - - 98 - 1 - +1 11917 11983 12393 474 408 0.24 0 0 - - 99 - - +2 12227 12311 12469 240 156 -2.03 0 - 0 - 99 - - +1 12394 12433 12606 210 171 -1.52 0 0 - - 99 - - +2 12593 12599 12745 150 144 -1.76 0 - 0 - 99 - - +2 12797 12923 13057 258 132 0.24 0 0 0 - 99 - - +1 12607 12967 13122 513 153 4.30 0 0 - - 99 - - -3 13208 13175 13017 189 156 -4.96 0 - - - 99 - 0 +1 13123 13183 13401 276 216 -6.38 0 0 - - 99 - - 0017 -1 13452 13434 11929 1521 1503 8.87 99 - - - 99 - - +2 13190 13280 13456 264 174 2.16 0 - 0 - 99 - - 0018 +3 13293 13314 13496 201 180 1.23 99 - - 99 - - - +1 13420 13468 13608 186 138 -2.46 0 0 - - 99 - - +3 13497 13509 13667 168 156 -8.06 0 - - 0 99 - - +2 13544 13601 13747 201 144 0.77 0 - 0 - 99 - - -3 13979 13922 13794 183 126 -7.71 0 - - - 99 - 0 -2 14068 14068 13940 126 126 -9.10 0 - - - 99 0 - +1 13993 14089 14241 246 150 0.42 0 0 - - 99 0 - -2 14302 14212 14069 231 141 -4.31 0 0 - - 99 0 - +3 14220 14262 14438 216 174 -4.60 0 0 - 0 99 - - 0019 -1 14643 14505 13453 1188 1050 10.67 99 - - - 99 - -