Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ndongoniae.result/NZ_FNVV010000121.6.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ndongoniae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ndongoniae.result/NZ_FNVV010000121.6.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ndongoniae.result/NZ_FNVV010000121.6.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ndongoniae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_FNVV010000121.6.AOI_01 Sequence length = 21122 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 166 226 348 180 120 -17.78 0 0 - 99 - - - -2 646 517 377 267 138 -2.87 0 - - 99 - 0 - 0001 +3 3 21 689 684 666 7.24 99 - - 99 - - - 0002 +1 670 676 816 144 138 -8.48 99 99 - - - - - 0003 -3 947 938 705 240 231 -3.01 99 - - - - - 99 -2 1387 1249 1103 282 144 -12.67 0 99 - - 0 0 - +2 1370 1499 1663 291 162 -7.87 0 99 0 - 0 - - 0004 -1 1770 1740 838 930 900 -6.59 0 99 - - 0 - - +3 1617 1617 1880 261 261 -13.64 0 99 - 0 - - - -1 1953 1911 1771 180 138 -2.78 0 99 - - 0 - - -2 2200 1924 1790 408 132 -9.30 0 99 - - 0 0 - +2 2114 2123 2275 159 150 -3.30 0 99 0 - 0 - - -2 2362 2326 2201 159 123 -20.04 0 99 - - 0 0 - -2 2794 2788 2642 150 144 -12.76 0 99 - 0 0 0 - 0005 -1 2853 2790 1972 879 816 -6.14 0 99 - - 0 0 - +2 2858 2930 3055 195 123 -6.44 0 99 0 - 0 0 - -2 3130 2956 2813 315 141 -16.70 0 99 - - - 0 - -1 3225 3066 2854 369 210 -3.81 0 99 - - 0 0 - -3 3296 3272 3111 183 159 -5.98 0 99 - - - - 0 0006 +1 817 841 3339 2520 2496 8.88 99 99 - - - - - -3 3935 3929 3786 147 141 3.46 0 99 - 0 0 - 0 -3 4292 4289 4152 138 135 -2.70 0 99 - 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