Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSQI010000191.780.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSQI010000191.780.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSQI010000191.780.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSQI010000191.780.AOI_01 Sequence length = 21311 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 383 356 189 192 165 -5.33 0 - - - 99 - 0 +3 285 303 428 141 123 1.70 0 - - 0 99 - - 0001 -1 693 675 148 543 525 6.10 99 - - - 99 - - +3 429 537 704 273 165 -5.30 0 99 - 0 - - - 0002 +2 665 701 823 156 120 1.78 19 2 19 - - 77 - 0003 +1 436 514 1098 660 582 3.42 99 99 - - - - - +3 975 1095 1295 318 198 -10.24 0 - 90 0 9 - - 0004 -1 1317 1128 991 324 135 1.09 95 - 4 0 95 - - 0005 +2 932 1091 1321 387 228 -1.83 96 - 96 - 3 - - 0006 +1 1177 1216 1347 168 129 -2.74 99 99 - - - - - +1 1348 1486 1761 411 273 2.92 0 0 - - - - 99 -2 1822 1822 1700 120 120 -13.45 0 - - 0 - 0 99 +3 1503 1620 1877 372 255 -3.94 0 - - 0 - - 99 +1 1762 1798 1956 192 156 -3.19 0 0 - - - - 99 +2 1829 1940 2074 243 132 -3.99 0 - 0 0 - - 99 +1 2011 2119 2247 234 126 -1.85 0 0 - - - - 99 +1 2251 2383 2514 261 129 -8.21 0 0 - 0 - - 99 +3 2145 2454 2702 555 246 -1.98 0 - - 0 - - 99 +1 2815 2917 3069 252 150 -2.87 0 0 - 0 - - 99 0007 -3 3134 3119 1344 1788 1773 10.10 99 - - - - - 99 0008 +3 2841 3012 3197 354 183 -0.92 99 - - 99 - - - 0009 -1 3339 3258 3124 213 132 5.89 99 - - - 99 - - 0010 +3 3426 3438 3590 162 150 0.96 99 - - 99 - - - +2 4067 4076 4237 168 159 1.35 0 - 0 0 - - 99 -2 4435 4426 4298 135 126 -9.85 0 - - 0 - 0 99 +1 4369 4390 4530 159 138 -1.02 0 0 0 0 - - 99 0011 +3 3786 3966 4607 819 639 -3.32 0 - 0 0 - - 99 +1 4561 4579 4740 177 159 -3.81 0 0 - - - - 99 -2 5446 5422 5294 150 126 -5.21 0 - - 0 - 0 99 +3 5136 5373 5513 375 138 1.33 0 - - 0 - - 99 0012 -3 5678 5678 3480 2196 2196 12.51 99 - - - - - 99 +2 6005 6158 6352 345 192 0.43 0 - 0 - - 99 - +2 6353 6539 6667 312 126 3.29 0 - 0 - 0 99 - +2 6956 6980 7282 324 300 0.56 0 - 0 - - 99 - -1 7563 7563 7435 126 126 -6.11 0 - 0 - 0 99 - +2 7283 7445 7705 420 258 -1.36 0 - 0 - - 99 - +2 7706 7754 7954 246 198 -5.51 0 - 0 0 - 99 - +3 7743 7842 7976 231 132 4.97 0 - - 0 - 99 - 0013 -2 8062 8032 5711 2349 2319 12.59 99 - - - - 99 - 0014 +2 8135 8213 8335 198 120 7.11 99 - 99 - - - - 0015 -2 8479 8380 8216 261 162 6.63 99 - - - - 99 - -1 8586 8499 8305 279 192 -0.29 0 - - 99 0 - - -1 9441 9420 9298 141 120 3.67 0 - - 99 0 - - -3 9539 9521 9399 138 120 2.82 0 - - 99 - - 0 -2 9769 9760 9461 306 297 4.81 0 - - 99 - 0 - 0016 +3 8259 8268 9875 1614 1605 9.39 99 - - 99 - - - -3 9938 9797 9651 285 144 2.28 0 - - 99 - - 0 0017 -1 9951 9942 9820 129 120 -0.21 94 - - - 94 3 2 -2 9961 9931 9794 165 135 -5.12 7 - - - - 7 92 +2 10004 10019 10159 153 138 1.91 0 99 0 - - - - -2 10378 10330 10187 189 141 -5.02 0 99 - - - 0 - +2 10376 10385 10579 201 192 -2.22 0 99 0 - - - - -3 10823 10709 10512 309 195 0.11 0 99 - - - - 0 +3 10602 10773 10901 297 126 -4.00 0 99 - 0 - - - -1 11025 11022 10852 171 168 5.19 0 99 - - 0 - - -3 11333 11303 11151 180 150 -0.26 0 99 - - - 0 0 -2 11344 11170 10946 396 222 0.97 0 99 - - - 0 - 0018 +1 9979 10000 11424 1443 1422 9.33 99 99 - - - - - +2 11831 12041 12313 480 270 -1.22 0 - 0 - - 99 - +1 12193 12310 12450 255 138 -1.03 0 0 - - - 99 - 0019 -2 12454 12409 11525 927 882 10.14 99 - - - - 99 - 0020 -3 12623 12602 12447 174 153 -0.03 99 - - - - - 99 +1 12583 12721 12906 321 183 1.84 0 0 - - 99 - - -3 13148 13142 13002 144 138 0.24 0 0 - - 99 - 0 +1 12907 13306 13542 633 234 -3.38 0 0 - - 99 - - +3 13488 13554 13715 225 159 2.66 0 - - 0 99 - - +1 13609 13666 13824 213 156 2.17 0 0 - - 99 - - 0021 -1 14211 14106 12463 1746 1641 9.97 99 - - - 99 - - 0022 +2 13991 14015 14218 225 201 -0.01 99 - 99 - - - - +3 14022 14199 14345 321 144 -2.07 0 0 - 0 - - 99 0023 -3 15299 15287 14127 1170 1158 9.57 99 - - - - - 99 0024 -1 15375 15354 15217 156 135 1.83 95 - 4 - 95 - - 0025 +1 15304 15316 15447 141 129 -1.06 99 99 - - - - - 0026 -1 15618 15591 15448 168 141 6.25 99 - 0 - 99 - - 0027 +2 15416 15422 15643 225 219 -2.08 99 - 99 - - - - -2 15943 15919 15788 153 129 -0.91 0 99 - - 0 0 - -1 16050 15900 15736 312 162 1.76 0 99 - - 0 - - 0028 +1 15487 15493 16365 876 870 10.71 99 99 - - - - - 0029 -3 16535 16415 16272 261 141 3.04 99 - - - - - 99 +2 16844 16844 17221 375 375 -3.17 0 - 0 - - 99 - +3 17184 17214 17387 201 171 -2.31 0 - - 0 - 99 - +2 17222 17453 17701 477 246 -1.93 0 - 0 - - 99 - +1 17578 17578 17709 129 129 -5.40 0 0 - - - 99 - +2 17813 17828 18019 204 189 1.32 0 - 0 - - 99 - 0030 -2 18352 18328 16526 1824 1800 12.50 99 - - - - 99 - +3 18180 18195 18356 174 159 -1.72 0 - - 0 - 99 - 0031 -3 18425 18386 18237 186 147 0.46 99 - - - - - 99 0032 +2 18446 18482 18607 159 123 2.84 99 - 99 - - - - -3 18944 18941 18678 264 261 -2.76 0 99 - - - - 0 -3 19148 19103 18954 192 147 -2.68 0 99 - - 0 - 0 -1 19374 19047 18922 450 123 4.03 0 99 - - 0 - - -3 19412 19403 19251 159 150 1.92 0 99 - - - - 0 -2 19507 19483 19337 168 144 -2.01 0 99 - - - 0 - -1 19611 19497 19375 234 120 -8.54 0 99 - - 0 0 - -3 19658 19622 19494 162 126 -0.31 0 99 - - - - 0 -1 19839 19830 19651 186 177 2.26 0 99 - - 0 - - -1 20043 20040 19840 201 198 -3.92 0 99 - - 0 - - +2 19886 19964 20086 198 120 -2.99 0 99 0 - - - - -1 20334 20181 20044 288 135 1.94 0 99 - - 0 - - -3 20582 20576 20442 138 132 -4.63 0 99 - - - - 0 +2 20615 20648 20899 282 249 -2.15 0 99 0 - - - - +3 20721 20727 20915 192 186 -4.43 0 99 - 0 - - - -1 21081 20940 20794 285 144 -0.41 0 99 - - 0 - -