Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSCJ010000191.914.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSCJ010000191.914.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSCJ010000191.914.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSCJ010000191.914.AOI_01 Sequence length = 21308 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 411 399 268 141 129 -4.37 0 - 99 - 0 0 - -1 786 768 592 192 174 -6.00 0 - 99 - 0 0 - -1 1128 1044 889 237 153 -4.79 0 - 99 - 0 0 - 0001 -2 1222 1162 167 1053 993 -0.73 0 - 99 - - 0 - +3 1302 1305 1472 168 165 -5.18 0 - 99 0 - - - -1 1584 1551 1375 207 174 0.77 0 - 99 - 0 0 - -2 1996 1660 1337 657 321 -2.08 0 - 99 - - 0 - -2 2239 2233 1997 240 234 -0.53 0 - 99 - - 0 - 0002 +2 2 23 2344 2340 2319 7.55 99 - 99 - - - - 0003 -3 2450 2447 2313 135 132 2.12 99 - - - - - 99 -1 2595 2559 2434 159 123 1.37 0 99 - - 0 - - 0004 +2 2441 2453 2641 198 186 6.31 99 - 99 - - - - +2 2642 2801 2923 279 120 -5.58 0 - 0 - - - 99 +1 2998 3004 3129 129 123 1.02 0 0 - 0 - - 99 +3 2928 3030 3152 222 120 -1.00 0 - 0 0 - - 99 +1 3340 3340 3471 129 129 -1.35 0 0 - 0 - - 99 +3 3207 3216 3599 390 381 2.27 0 - - 0 - - 99 0005 -3 3647 3593 2676 969 915 11.70 99 - - - - - 99 +1 3637 3676 3882 243 204 -3.91 0 0 - - 99 - - -3 4184 4163 4032 150 129 -4.80 0 - - - 99 - 0 +1 4057 4306 4434 375 126 0.87 0 0 - - 99 - - +2 4340 4346 4486 144 138 -5.23 0 - 0 - 99 - - -3 4628 4568 4431 195 135 -6.84 0 3 - - 96 - 0 +1 4435 4483 4701 264 216 2.20 6 6 - - 93 - - +2 4640 4667 4795 153 126 5.62 7 - 7 - 92 - - +1 4783 4870 5043 258 171 -0.04 0 0 - - 99 - - +1 5134 5191 5337 201 144 0.86 0 0 - - 99 - - -3 5762 5753 5625 135 126 -2.69 0 0 - - 99 - 0 +1 5467 5617 5820 351 201 -4.48 0 0 - - 99 - - +3 6159 6237 6371 210 132 -6.80 0 4 - 0 95 - - +1 5821 5953 6414 591 459 0.10 0 0 - - 99 - - 0006 -1 6459 6318 3631 2826 2685 6.54 99 - - - 99 - - -1 6957 6930 6763 192 165 -5.31 0 - - - 0 99 - +1 6859 6877 7002 141 123 0.64 0 0 - - - 99 - 0007 -2 7267 7249 6722 543 525 8.42 99 - - - - 99 - +1 7003 7111 7389 384 276 -5.45 0 0 99 - - - - 0008 +2 7010 7220 7450 438 228 2.19 99 - 99 - - - - 0009 -2 7474 7474 7271 201 201 2.85 99 - - - - 99 - 0010 +3 7311 7416 7565 252 147 -3.26 99 - - 99 - - - +2 8042 8051 8212 168 159 -1.12 0 - 0 0 - - 99 -2 8410 8401 8273 135 126 -9.29 0 - - 0 - 0 99 +1 8344 8365 8505 159 138 -1.71 0 0 0 0 - - 99 0011 +3 7761 7941 8582 819 639 -3.37 0 - 0 0 - - 99 +1 8536 8554 8715 177 159 -5.02 0 0 - - - - 99 -2 9421 9397 9269 150 126 -6.52 0 - - 0 - 0 99 +3 9111 9348 9488 375 138 1.64 0 - - 0 - - 99 0012 -3 9653 9653 7455 2196 2196 12.17 99 - - - - - 99 0013 -3 9947 9893 9771 174 120 1.32 99 - - - - - 99 0014 -1 9993 9969 9817 174 150 7.24 99 - - - 99 - - +1 10000 10015 10155 153 138 -1.24 0 0 - 99 - - - -2 10303 10300 10175 126 123 -4.03 0 - - 99 - 0 - -3 10442 10439 10242 198 195 4.54 0 - - 99 - - 0 -2 10801 10795 10652 147 141 2.13 0 - 0 99 - 0 - +2 10562 10625 10873 309 246 -7.03 0 - 0 99 - - - -2 11329 11299 11147 180 150 2.58 0 - - 99 0 0 - -1 11340 11166 11035 303 129 -2.74 0 - - 99 0 - - 0015 +3 9975 9996 11420 1443 1422 9.63 99 - - 99 - - - +1 11827 12037 12309 480 270 -2.42 0 0 - - 99 - - 0016 -1 12429 12408 11521 906 885 10.52 99 - - - 99 - - +2 12473 12479 12601 126 120 -10.64 0 - 0 0 - - 99 +3 12450 12534 12680 228 144 -2.19 0 0 - 0 - - 99 0017 -3 13634 13586 12444 1188 1140 10.33 99 - - - - - 99 0018 -1 13710 13689 13552 156 135 3.30 99 - 0 - 99 - - 0019 +1 13639 13651 13782 141 129 -1.70 99 99 - - - - - 0020 -1 13953 13926 13783 168 141 5.86 99 - 0 - 99 - - 0021 +2 13751 13757 13978 225 219 -2.16 99 - 99 - - - - -2 14278 14245 14123 153 120 -1.19 0 99 - - 0 0 - +3 14154 14193 14360 204 165 -0.78 0 99 - 0 0 - - -1 14385 14235 14071 312 162 0.46 0 99 - - 0 - - 0022 +1 13822 13828 14700 876 870 10.72 99 99 - - - - - 0023 -3 14870 14750 14607 261 141 4.12 99 - - - - - 99 +3 14919 14925 15080 159 153 2.32 0 - - 0 - 99 - +2 15179 15179 15556 375 375 -2.04 0 - 0 - - 99 - +3 15519 15549 15722 201 171 -3.87 0 - - 0 - 99 - +2 15557 15719 15931 372 210 -0.69 0 - 0 - - 99 - +1 15913 15913 16044 129 129 -6.66 0 0 - - - 99 - +2 16148 16163 16354 204 189 0.81 0 - 0 - - 99 - 0024 -2 16687 16663 14861 1824 1800 11.49 99 - - - - 99 - +3 16515 16530 16691 174 159 -3.05 0 - - 0 - 99 - 0025 -1 16875 16845 16684 189 159 2.34 99 - - - 99 - - 0026 +2 16781 16796 16942 159 144 2.71 99 - 99 - - - - -3 17279 17276 17013 264 261 -1.52 0 99 - - - - 0 -3 17483 17447 17289 192 156 -2.31 0 99 - - - - 0 -3 17747 17738 17586 159 150 2.40 0 99 - - 0 - 0 -2 17842 17818 17672 168 144 -4.53 0 99 - - 0 0 - -1 17946 17832 17377 567 453 -1.80 0 99 - - 0 - - -3 17993 17957 17829 162 126 -0.10 0 99 - - - - 0 -1 18174 18102 17947 225 153 1.40 0 99 - - 0 - - -1 18378 18375 18175 201 198 -2.59 0 99 - - 0 - - +2 18221 18299 18421 198 120 -3.36 0 99 0 - - - - -1 18669 18516 18379 288 135 3.86 0 99 - - 0 - - -3 18917 18911 18777 138 132 -5.52 0 99 - - - - 0 +3 19056 19062 19199 141 135 -6.31 0 99 0 0 - - - +2 18950 19001 19234 282 231 -2.87 0 99 0 - - - - -1 19299 19275 19129 168 144 1.33 0 99 - - 0 - - -2 19345 19339 19217 126 120 -4.86 0 99 - - - 0 - -1 19791 19647 19522 267 123 -0.04 0 99 - - 0 - - -3 19829 19829 19653 174 174 -4.16 0 99 - - - - 0 -2 19957 19948 19775 180 171 -5.42 0 99 - - - 0 - 0027 +1 16939 16954 20061 3120 3105 11.49 99 99 - - - - - 0028 -1 20073 20064 19861 210 201 2.91 99 - - - 99 - - +3 20049 20133 20288 237 153 -10.84 0 99 - 0 0 - - -1 20349 20349 20116 231 231 -0.34 0 99 - - 0 - - +2 20222 20231 20377 153 144 -5.00 0 99 0 - - - - -2 20620 20593 20435 183 156 -5.41 0 99 - - - 0 - +2 20546 20570 20695 147 123 -3.83 0 99 0 - - - - -2 20809 20806 20621 186 183 0.03 0 99 - - 0 0 - -1 21147 20796 20590 555 204 0.02 0 99 - - 0 - - -1 21306 21297 21148 156 147 0.47 0 99 - - 0 - -