Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSCJ010000021.880.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSCJ010000021.880.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QSCJ010000021.880.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QSCJ010000021.880.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 372 210 73 297 135 -4.43 0 - 99 - 0 0 - 0001 +2 2 23 655 651 630 14.29 99 - 99 - - - - 0002 -3 806 806 636 168 168 -0.30 99 - - - - - 99 +1 1207 1219 1341 132 120 -4.09 0 0 - 99 - - 0 0003 -3 1643 1643 855 786 786 -1.82 0 - - 99 - - 0 -2 1714 1699 1508 204 189 -0.78 0 - - 99 - 0 - -2 2038 2017 1838 198 177 -0.23 0 - - 99 - 0 - -1 2094 2073 1894 198 177 -7.10 0 - - 99 0 - - 0004 +3 825 837 2237 1410 1398 8.62 99 - - 99 - - - -3 2237 2123 1920 315 201 -3.99 0 - - 99 - - 0 -2 2254 2182 2039 213 141 -1.01 0 - - 99 - 0 0 0005 -1 2583 2571 2362 219 207 9.30 99 - - - 99 - - 0006 +1 2371 2461 2619 246 156 0.86 99 99 - - - - - +1 2719 2746 2898 177 150 -2.53 0 0 - - 99 - - +3 2892 2895 3053 159 156 -2.77 0 - 0 0 99 - 0 -3 3104 2942 2784 318 156 -6.16 0 - - - 99 - 0 +1 2983 2986 3147 162 159 -2.12 0 0 0 - 99 - - +2 2861 2903 3151 288 246 -6.31 0 - 0 - 99 - - +3 3114 3123 3317 201 192 -0.80 0 - - 0 99 - - +2 3404 3557 3685 279 126 -3.32 0 0 0 - 99 - - +1 3505 3562 3750 243 186 -0.35 0 0 - - 99 - - +1 3751 3763 3966 213 201 3.02 0 0 - 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99 0 - - - -2 18997 18994 18806 189 186 1.15 0 - 99 - - 0 - -1 19338 19227 18970 366 255 -5.02 0 - 99 - 0 - - 0036 +2 16901 16913 19342 2439 2427 9.04 99 - 99 - - - - 0037 -2 19477 19441 19250 225 189 2.18 99 - - - - 99 - +1 19471 19573 19704 231 129 -3.13 0 0 - 99 - - 0 -3 19796 19544 19410 384 132 -3.47 0 - - 99 - - 0 -2 19909 19906 19775 132 129 -7.80 0 - - 99 - 0 - -1 20226 20205 20068 156 135 -11.28 0 - - 99 0 - 0 -3 20369 20333 20202 165 129 -3.14 0 - - 99 - - 0 -3 20525 20522 20370 153 150 2.20 0 - - 99 - - 0 0038 +3 19365 19368 20603 1236 1233 9.37 99 - - 99 - - - 0039 +2 20636 20648 20785 147 135 3.11 99 - 99 - - - - 0040 -1 21117 21027 20698 417 327 5.22 99 - - - 99 - -