Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRZF010000081.947.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRZF010000081.947.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRZF010000081.947.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRZF010000081.947.AOI_01 Sequence length = 21308 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +2 98 275 421 321 144 1.01 0 - 0 - - 99 - -3 494 488 351 141 135 -7.34 0 - - - 0 99 0 -1 600 567 316 282 249 -2.88 0 - - - 0 99 - +3 633 639 773 138 132 -4.69 0 - - 0 - 99 - +2 881 1034 1171 288 135 2.18 0 - 0 - - 99 - -1 1329 1251 1108 219 141 -2.28 0 - - - 0 99 - +2 1172 1175 1375 201 198 -4.42 0 - 0 - - 99 - +2 1376 1448 1603 225 153 3.24 0 - 0 - - 99 - +3 1557 1593 1721 162 126 0.33 0 - - 0 - 99 - +1 1708 1732 1878 168 144 -2.99 0 0 0 - - 99 - +3 1803 1812 1964 159 150 1.51 0 - 0 0 - 99 - +3 2067 2103 2261 192 156 -0.59 0 - 0 0 - 99 - +2 1604 1994 2296 690 300 -1.78 0 - 0 - - 99 - +3 2271 2274 2537 264 261 -1.98 0 - - 0 - 99 - 0001 -1 2769 2733 2608 159 123 1.98 99 - - - 99 - - 0002 +3 2790 2829 2978 186 147 2.57 99 - - 99 - - - -3 3035 3020 2859 174 159 -0.95 0 99 - - - - 0 -3 3305 3281 3156 147 123 0.51 0 99 - - - - 0 -1 3375 3375 3196 177 177 -2.40 0 99 - - 0 - - +2 3335 3344 3496 159 150 -2.67 0 99 0 - - - - -1 3771 3711 3580 189 129 -4.09 0 99 - - 0 - - -1 4083 3951 3772 309 177 -2.85 0 99 - - 0 - - -2 4624 4606 4466 156 138 1.63 0 99 - - - 0 0 0003 +1 2863 2887 4689 1824 1800 11.97 99 99 - - - - - -3 4925 4916 4764 159 150 -0.71 0 - 95 4 - - 0 0004 +3 4680 4800 4943 261 141 4.81 33 - 66 33 - - - 0005 +2 4685 4772 5011 324 237 -0.30 99 - 99 - - - - +3 5097 5097 5291 192 192 2.06 0 - - 0 - 99 - +1 5275 5305 5427 150 120 -5.80 0 0 0 - - 99 - -1 5571 5472 5347 222 123 -4.80 0 - 0 - 0 99 - +2 5150 5303 5596 444 291 -1.56 0 - 0 - - 99 - 0006 -2 5728 5722 4850 876 870 10.33 99 - - - - 99 - 0007 +2 5597 5624 5767 168 141 4.94 99 - 99 - 0 - - 0008 -1 5799 5793 5572 225 219 -2.77 99 - - - 99 - - 0009 -2 5911 5899 5768 141 129 -0.90 99 - - - - 99 - 0010 +2 5840 5861 6061 219 198 -1.57 89 - 89 - 10 - - 0011 +3 5916 5928 7088 1170 1158 10.03 99 - - 99 - - - 0012 -3 7169 7145 6870 297 273 -1.09 99 - - - - - 99 -1 7704 7647 7489 213 156 2.32 0 99 - - 0 - - -2 7906 7882 7598 306 282 3.65 0 99 - - - 0 - -3 8045 8003 7839 204 162 0.48 0 99 - - 0 - 0 +2 8165 8204 8356 189 150 0.23 0 99 0 - 0 - - -1 8406 7947 7771 633 174 -4.01 0 99 - - 0 - - -1 8730 8592 8407 321 183 1.66 0 99 - - 0 - - 0013 +1 7204 7231 8847 1641 1614 9.91 99 99 - - - - - 0014 +2 8690 8711 8866 174 153 -1.55 99 - 99 - - - - -1 9120 9003 8863 255 138 -3.01 0 - - 99 0 - - -3 9482 9272 9000 480 270 -1.13 0 - - 99 - - 0 0015 +3 8859 8904 9788 927 882 9.87 99 - - 99 - - - +2 9980 10010 10162 180 150 -0.57 0 - 0 0 99 - - +3 9969 10221 10367 396 144 1.48 0 - - 0 99 - - +2 10508 10514 10657 147 141 -0.70 0 - 0 - 99 0 - +1 10867 10870 11112 243 240 1.37 0 0 - - 99 - - -3 11309 11294 11154 153 138 2.44 0 - - - 99 - 0 0016 -1 11334 11313 9889 1443 1422 9.36 99 - - - 99 - - 0017 +3 11352 11382 11519 165 135 -2.65 99 - - 99 - - - +3 11544 11553 11852 306 297 3.52 0 - - 0 - 99 - +2 11774 11792 11914 138 120 3.54 0 - 0 - - 99 - +1 12727 12814 13008 279 192 -1.35 0 0 - - - 99 - 0018 -2 13054 13006 11438 1614 1566 9.68 99 - - - - 99 - 0019 +3 12834 12933 13067 231 132 3.59 99 - - 99 - - - -1 13569 13560 13336 231 222 3.13 0 - 99 - 0 - - +3 13749 13749 13877 126 126 -6.75 0 - 99 0 - 0 - -2 14029 13867 13676 351 189 -1.02 0 - 99 - - 0 - -2 14356 14332 14030 324 300 -0.56 0 - 99 - - 0 - -1 14586 14577 14452 132 123 0.05 0 - 99 - 0 0 - -2 14959 14773 14357 600 414 -0.54 0 - 99 - - 0 - -2 15307 15265 14960 345 303 0.93 0 - 99 - - 0 - 0020 +2 13250 13280 15601 2349 2319 12.50 99 - 99 - - - - +2 15866 15890 16018 150 126 -8.85 0 99 0 - 0 - - -1 16176 15939 15799 375 138 1.72 0 99 - - 0 - - -3 16751 16733 16572 177 159 -4.21 0 99 - - - - 0 -3 16943 16922 16782 159 138 -2.47 0 99 - - 0 - 0 +2 16877 16886 17014 135 126 -8.33 0 99 0 - 0 - - -2 17245 17236 17075 168 159 0.37 0 99 - - 0 0 - -1 17427 16905 16705 720 198 -5.79 0 99 - - 0 - - +3 17271 17301 17447 174 144 -5.08 0 99 - 0 - - - 0021 +1 15634 15634 17832 2196 2196 12.80 99 99 - - - - - 0022 -1 17886 17874 17722 162 150 0.41 99 - - - 99 - - 0023 -2 18469 18298 18113 354 183 -0.65 99 - - - - 99 - -1 18495 18393 18241 252 150 -2.00 0 - 99 - 0 0 - -1 19059 18927 18796 261 129 -10.38 0 - 99 - 0 0 - -2 19069 18856 18608 459 246 -2.69 0 - 99 - - 0 - +1 18991 19072 19194 201 120 -10.53 0 0 99 - - - - -1 19299 19236 19081 216 153 -1.58 0 - 99 - 0 - - -3 19481 19370 19236 243 132 -5.27 0 - 99 - - 0 0 -1 19548 19542 19354 192 186 -2.62 0 - 99 - 0 - - -1 19704 19686 19549 153 135 -2.67 0 - 99 - 0 0 - -2 19915 19690 19433 480 255 -0.83 0 - 99 - - 0 - -1 19962 19830 19705 255 123 6.00 0 0 99 - 0 0 - 0024 +2 18176 18191 19966 1788 1773 10.65 99 - 99 - - - - -2 20209 20125 20003 204 120 -9.67 0 - 10 - 88 0 - 0025 +2 20000 20180 20317 315 135 1.40 99 - 99 - 0 - 0 -3 20333 20213 20013 318 198 -11.86 0 - 1 - 98 0 0 0026 -2 20374 20359 20210 162 147 -2.45 97 - - - 2 97 - 0027 -1 20466 20217 19996 468 219 -1.77 99 - 0 - 99 - - 0028 -2 20767 20557 20381 384 174 3.15 99 - - - - 99 0 0029 -3 20774 20666 20334 438 330 -3.28 99 - - - - - 99 -3 20948 20900 20775 171 123 1.13 0 - 99 - - - 0 +3 20820 20850 21014 192 162 -6.44 0 - 97 0 2 - - 0030 +2 20510 20528 21055 543 525 5.52 99 - 99 - - - -