Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRZF010000011.961.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRZF010000011.961.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRZF010000011.961.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRZF010000011.961.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +1 1 55 372 369 315 4.99 99 99 - - - - - +1 538 541 693 153 150 0.73 0 0 - - 99 - - +1 694 730 861 165 129 -2.88 0 0 - - 99 - - +1 862 1006 1140 276 132 -3.53 0 0 - - 99 - - +2 1154 1157 1288 132 129 -2.85 0 - 0 - 99 - - -3 1592 1490 1359 231 129 -7.08 0 0 - - 99 - 0 +1 1267 1531 1653 384 120 -2.59 0 0 - - 99 - - 0002 -1 1698 1695 460 1236 1233 8.93 99 - - - 99 - - 0003 +2 1586 1604 1813 225 207 1.70 99 - 99 - - - - +3 1725 1836 2093 366 255 -5.47 0 - - 0 - 99 - -1 2211 2160 2026 183 132 -3.81 0 - 0 - 0 99 - -1 2472 2421 2212 258 207 -8.96 0 - 5 - 0 94 - +2 1949 2414 2545 594 129 1.09 1 - 1 0 - 98 - -3 2687 2681 2514 171 165 -4.82 0 0 - - - 99 0 +1 2500 2527 2691 189 162 -9.63 0 0 - - - 99 0 0004 +3 2595 2622 2747 150 123 1.28 23 - 0 23 - 76 - -3 3068 3056 2880 186 174 -1.58 0 - 0 - - 99 0 +2 2546 2960 3118 570 156 0.82 0 - 0 - - 99 - +3 3402 3498 3689 285 189 -1.16 0 - 0 0 - 99 - +3 3810 3840 4004 192 162 -7.02 0 - 0 0 - 99 - 0005 +2 3119 3191 4018 897 825 -0.69 0 - 0 - - 99 - 0006 -2 4219 4180 1721 2496 2457 4.82 99 - - - - 99 - 0007 +3 4005 4095 4223 216 126 4.07 43 - - 43 - 56 - 0008 -2 4429 4408 4220 207 186 -2.24 99 - - - - 99 - 0009 -3 4790 4790 4638 150 150 2.98 99 - - - - - 99 -3 5153 5060 4926 225 132 -7.01 0 99 - - 0 - 0 -1 5229 5208 4909 318 297 -1.72 0 99 - - 0 - - +2 5270 5339 5473 201 132 -5.37 0 99 0 - 0 - - +2 5744 5801 5953 207 150 -13.85 0 99 0 - 0 - - 0010 +1 4690 4714 5961 1269 1245 10.04 99 99 - - - - - -1 6012 5883 5605 405 276 5.71 0 99 - - 0 - - 0011 -3 6332 6161 6006 324 153 5.03 99 - - - - - 99 +3 6099 6249 6380 279 129 -8.43 0 99 - 0 0 - - -1 6444 6303 6163 279 138 -0.97 0 99 - 0 0 - 0 -1 6585 6573 6445 138 126 -7.84 0 99 - - 0 - 0 -3 6614 6530 6390 222 138 3.92 0 99 - - - - 0 -1 6774 6771 6586 186 183 1.78 0 99 - - 0 - - -1 6963 6903 6775 186 126 -3.14 0 99 - - 0 - - 0012 +1 6019 6028 6981 960 951 11.14 99 99 - - - - - 0013 +1 6982 7057 7209 225 150 4.22 96 96 3 - - - - -2 7414 7300 7163 249 135 1.24 0 - 99 - 0 0 - -3 7577 7502 7170 405 330 -7.70 0 - 99 - - - 0 -1 7731 7695 7555 174 138 -4.95 0 - 99 - 0 - - +1 7621 7627 7785 162 156 -9.57 0 0 99 - - - - 0014 +2 7049 7172 7813 762 639 9.68 99 - 99 - - - - 0015 -1 8037 7950 7810 225 138 2.37 99 - - - 99 - - -2 8083 8032 7841 240 189 -10.56 0 - - - 99 0 - -3 8465 8450 8328 135 120 -8.35 0 99 - - 0 - 0 -1 8811 8220 8059 750 159 -2.10 0 99 - - 0 - - -3 8918 8891 8751 165 138 -2.60 0 99 - - - - 0 0016 +1 7861 7873 8946 1083 1071 5.33 99 99 - - - - - +1 8947 9007 9147 198 138 -10.96 0 0 - 99 - - - -3 9215 9191 9051 162 138 2.16 0 - - 99 - - 0 +1 9163 9202 9348 183 144 -4.43 0 0 - 99 - - - -2 9562 9487 9356 204 129 -1.14 0 - - 99 - 0 0 -3 9581 9473 9345 234 126 -0.19 0 - - 99 - - 0 -3 9869 9851 9720 147 129 1.87 0 - - 99 - - 0 0017 +3 8931 8943 9917 984 972 11.13 99 - - 99 - - - -2 10183 10129 9989 192 138 -3.95 0 99 - - 0 0 - +3 10119 10143 10280 159 135 -5.06 0 99 - 0 - - - -3 10682 10658 10512 168 144 -4.64 0 99 - - 0 - 0 -2 10819 10786 10616 201 168 -1.69 0 99 - - - 0 - -3 10904 10892 10728 174 162 -2.91 0 99 - - - - 0 +2 10943 10946 11092 147 144 -2.18 0 99 0 - - - - 0018 +1 9979 9991 11148 1167 1155 9.75 99 99 - - - - - -1 11202 11130 10954 246 174 3.73 0 99 - - 0 - - -1 11400 11364 11203 195 159 -5.06 0 - - 99 0 - - -2 11407 11407 11252 153 153 1.00 0 - - 99 - 0 - -3 11537 11489 11361 174 126 -3.59 0 - 0 99 - - 0 -2 11560 11557 11408 150 147 0.49 0 - - 99 - 0 - 0019 +3 11154 11157 11843 687 684 10.44 99 - - 99 - - - 0020 -3 12017 11966 11739 276 225 8.40 99 - - - - - 99 -1 12078 12021 11893 183 126 1.58 0 99 - - 0 - 0 -3 12167 12152 12018 147 132 -3.77 0 99 - - - - 0 0021 +1 11776 11827 12237 459 408 12.72 99 99 - - - - - 0022 -2 12283 12277 12155 126 120 -1.73 99 - - - - 99 - 0023 +2 12230 12254 12388 156 132 -2.14 36 63 36 - - - - 0024 +1 12253 12295 12480 225 183 -3.08 99 99 - - - - - 0025 -3 12521 12494 12333 186 159 5.08 99 - - - - - 99 0026 +3 12405 12447 12575 168 126 0.08 99 - - 99 - - - -2 12823 12793 12653 168 138 0.46 0 - - 99 - 0 - 0027 +3 12576 12597 13250 672 651 12.77 99 - - 99 - - - 0028 -1 13671 13599 13330 339 267 -1.81 99 - - - 99 - - 0029 +2 13409 13418 13741 330 321 3.64 99 - 99 - - - - 0030 -2 13939 13852 13691 246 159 -5.38 99 - - - - 99 - -3 14021 13940 13758 261 180 0.20 0 - - 99 - 0 0 -3 14393 14378 14022 369 354 0.90 0 - - 99 - - 0 +2 14534 14585 14722 186 135 -5.74 0 0 0 98 - - 1 0031 +3 13734 13767 14756 1020 987 10.64 99 - - 99 - - - +1 14557 14638 14760 201 120 -2.15 0 0 - - - - 99 +3 14757 14799 14951 192 150 -4.71 0 99 - 0 - - 0 -3 15113 15056 14796 315 258 -0.17 0 99 - - - - 0 +3 14952 14973 15245 291 270 -12.06 0 99 0 0 - - - -3 15431 15287 15114 315 171 -10.16 0 99 - - - - 0 0032 +1 14761 14776 15462 699 684 10.84 99 99 - - - - - -1 15471 15408 15271 198 135 -6.73 0 99 - 0 0 - 0 0033 +3 15813 15825 16136 321 309 9.26 99 - - 99 - - - 0034 -2 16363 16144 15920 441 222 -1.04 99 - - - - 99 - +1 16186 16225 16398 210 171 -11.19 0 0 - 99 - - 0 -3 16607 16439 16221 384 216 1.24 0 - - 99 - - 0 +1 16408 16477 16662 252 183 -5.87 0 0 - 99 - - - -2 16744 16729 16595 147 132 -7.84 0 - - 99 0 0 - -3 16940 16802 16608 330 192 -0.87 0 - - 99 - - 0 0035 +3 16152 16182 16946 792 762 6.54 99 - - 99 - - - 0036 -3 17141 17087 16941 198 144 -0.77 99 - - - - - 99 +2 17006 17021 17170 162 147 -5.38 0 99 0 - 0 - - -1 17523 17415 17293 228 120 -4.57 0 99 - - 0 - - -3 17582 17558 17361 219 195 -2.73 0 99 - - - - 0 +2 17513 17513 17662 147 147 -1.19 0 99 0 - - - - -1 17787 17757 17572 213 183 4.90 0 99 - - 0 - - -1 18033 18030 17788 243 240 -0.92 0 99 - - 0 - - -3 18134 17981 17853 279 126 -3.03 0 99 - - 0 - 0 -2 18424 18415 18221 201 192 -0.26 0 99 - - - 0 - -1 18555 18528 18391 162 135 -3.52 0 99 - - 0 - 0 -2 18646 18643 18485 159 156 -1.83 0 99 0 - - 0 0 -3 18677 18635 18387 288 246 -3.58 0 99 - - - - 0 +2 18434 18596 18754 318 156 -6.95 0 99 0 - - - - -1 18819 18792 18640 177 150 -1.38 0 99 - - 0 - - 0037 +1 16987 16993 18852 1863 1857 10.62 99 99 - - - - - 0038 -1 19167 19077 18919 246 156 3.40 99 - - - 99 - - 0039 +1 18955 18967 19176 219 207 8.87 99 99 - - - - - +3 19284 19356 19499 213 141 0.56 3 - 0 3 - 96 - +1 19444 19465 19644 198 177 -9.23 0 0 0 - - 99 - +2 19301 19415 19693 390 276 -2.57 0 - 0 - - 99 - +3 19500 19521 19700 198 177 0.54 0 - - 0 - 99 - +3 19824 19839 20030 204 189 -0.88 0 - - 0 - 99 - 0040 +2 19895 19895 20683 786 786 -0.98 0 - 0 - - 99 - 0041 -2 20713 20701 19301 1410 1398 7.47 99 - - - - 99 - 0042 -1 20868 20844 20698 168 144 3.67 99 - - - 99 - - 0043 -1 21117 21117 20884 231 231 10.68 99 - - - 99 - -