Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRWT010000311.853.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRWT010000311.853.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRWT010000311.853.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRWT010000311.853.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -2 325 313 176 147 135 2.19 99 - - - - 99 - +1 436 439 591 153 150 3.04 0 0 - - 99 - - +1 592 628 759 165 129 -1.98 0 0 - - 99 - - +3 735 756 893 156 135 -12.35 0 0 - 0 99 - - +2 1052 1055 1186 132 129 -8.58 0 - 0 - 99 - - -3 1490 1388 1257 231 129 -4.59 0 0 - - 99 - 0 +1 1165 1225 1497 330 270 -3.20 0 0 - - 99 - - 0002 -1 1596 1593 358 1236 1233 8.55 99 - - - 99 - - +2 1622 1838 1969 345 129 -3.20 0 - 0 - 99 - - -3 2108 2057 1923 183 132 -3.41 0 - - - 99 - 0 +1 1954 1966 2154 198 186 1.91 0 0 - - 99 - - -3 2369 2258 2109 258 147 -7.28 0 - - - 99 - 0 +1 2155 2311 2442 285 129 1.82 3 3 - - 96 - - +3 2397 2424 2558 159 132 -7.93 0 - - 0 99 0 - -2 2584 2569 2411 171 156 -5.41 0 - - - 99 0 - +2 2492 2519 2644 150 123 0.34 9 0 9 - 90 - - -2 2776 2767 2618 156 147 -10.41 0 0 - - 99 0 - -3 2849 2807 2631 216 174 -8.77 0 0 - - 99 - 0 +1 2443 2869 3015 570 144 -0.97 0 0 - - 99 - - +2 3299 3395 3586 285 189 -1.47 0 0 0 - 99 - - +1 3016 3427 3690 672 261 1.07 0 0 - - 99 - - +2 3662 3698 3901 237 201 -7.54 0 0 0 - 99 - - +1 3691 3703 3915 222 210 -0.95 0 0 - - 99 - - 0003 -1 4116 4077 1618 2496 2457 4.84 99 - - - 99 - - +2 3902 3992 4120 216 126 5.10 10 - 10 - 89 - - 0004 -3 4367 4349 4188 177 159 0.86 94 - - 5 - - 94 -2 4426 4390 4268 156 120 -2.16 1 - - 5 93 1 - 0005 +3 4431 4452 4601 168 147 -0.57 99 - - 99 - - - 0006 -2 4702 4702 4550 150 150 3.69 99 - - - - 99 - -2 5065 4972 4838 225 132 -7.43 0 - - 99 - 0 0 -3 5141 5120 4821 318 297 -0.58 0 - - 99 - - 0 +1 5182 5251 5385 201 132 -9.29 0 0 - 99 - - 0 +1 5656 5713 5865 207 150 -13.97 0 0 - 99 - - 0 0007 +3 4602 4626 5873 1269 1245 9.29 99 - - 99 - - - 0008 -2 5917 5914 5792 123 120 -8.35 32 - - - - 32 67 -3 5924 5795 5517 405 276 6.24 0 - - 99 - - 0 0009 -3 6251 6197 5925 324 270 2.03 99 - - - - - 99 -1 6363 6333 6082 279 249 0.34 0 99 - - 0 - - -1 6504 6492 6364 138 126 -8.24 0 99 - - 0 - 0 -3 6533 6431 6309 222 120 1.10 0 99 - - - - 0 -1 6693 6690 6505 186 183 0.16 0 99 - - 0 - - -1 6882 6822 6694 186 126 -2.09 0 99 - - 0 - - 0010 +1 5938 5947 6900 960 951 11.87 99 99 - - - - - 0011 +1 6901 6904 7074 171 168 1.46 99 99 - - - - - -2 7414 7300 7163 249 135 2.23 0 - 99 - 0 0 - -3 7586 7493 7170 414 321 -8.49 0 - 99 - - - 0 -1 7731 7695 7555 174 138 -2.74 0 - 99 - 0 - - 0012 +2 6968 7040 7813 843 771 9.41 99 - 99 - - - - 0013 -2 8083 8032 7841 240 189 -9.90 99 - - - - 99 - -1 8286 8259 8059 225 198 -1.17 0 99 - - 0 - - -3 8465 8450 8328 135 120 -7.61 0 99 - 0 0 - 0 -1 8811 8754 8287 522 465 0.45 0 99 - - 0 - - -3 8918 8891 8751 165 138 -3.97 0 99 - - - - 0 0014 +1 7861 7873 8946 1083 1071 9.85 99 99 - - - - - +1 8947 9007 9147 198 138 -8.74 0 0 - 99 - - - -3 9311 9308 9051 258 255 1.61 0 - - 99 - - 0 +1 9163 9190 9315 150 123 -1.28 0 0 - 99 - - 0 -2 9562 9487 9356 204 129 -1.45 0 - - 99 - 0 0 -3 9581 9473 9345 234 126 0.18 0 - - 99 - - 0 -3 9869 9851 9720 147 129 3.00 0 - - 99 - - 0 0015 +3 8931 8943 9917 984 972 11.45 99 - - 99 - - - -2 10183 10153 9989 192 162 -5.71 0 99 - - 0 0 - -3 10682 10658 10512 168 144 -5.59 0 99 - - 0 - 0 -2 10819 10786 10616 201 168 -4.09 0 99 - - - 0 - -1 10839 10800 10660 177 138 -0.22 0 99 - 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