Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRWT010000151.866.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRWT010000151.866.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRWT010000151.866.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRWT010000151.866.AOI_01 Sequence length = 21308 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -2 412 400 269 141 129 -5.44 0 - - 99 - 0 0 -2 787 769 593 192 174 -5.18 0 - - 99 - 0 0 -2 1129 1045 890 237 153 -5.61 0 - - 99 - 0 0 0001 -3 1223 1163 168 1053 993 -0.78 0 - - 99 - - 0 +1 1303 1306 1473 168 165 -4.78 0 0 - 99 - - - -2 1585 1552 1376 207 174 0.64 0 - - 99 - 0 0 -3 1997 1610 1338 657 270 -2.79 0 - - 99 - - 0 -3 2240 2234 1998 240 234 -0.98 0 - - 99 - - 0 0002 +3 3 24 2345 2340 2319 7.85 99 - - 99 - - - 0003 -1 2451 2448 2314 135 132 1.69 99 - - - 99 - - -2 2596 2560 2435 159 123 0.91 0 - 99 - - 0 - 0004 +3 2442 2454 2642 198 186 5.91 99 - - 99 - - - +3 2643 2802 2924 279 120 -4.67 0 - - 0 99 - - +2 2999 3005 3130 129 123 0.33 0 0 0 - 99 - - +1 2929 3031 3153 222 120 -0.23 0 0 - 0 99 - - +2 3341 3341 3472 129 129 -0.72 0 0 0 - 99 - - +1 3208 3217 3600 390 381 1.76 0 0 - - 99 - - 0005 -1 3648 3594 2677 969 915 11.39 99 - - - 99 - - +2 3638 3677 3883 243 204 -3.46 0 - 0 - - 99 - -1 4185 4164 4033 150 129 -3.93 0 - - - 0 99 - +2 4058 4307 4435 375 126 0.76 0 - 0 - - 99 - +3 4341 4347 4487 144 138 -4.96 0 - - 0 - 99 - -1 4629 4569 4432 195 135 -6.57 0 - 7 - 0 92 - 0006 +2 4436 4484 4702 264 216 2.67 20 - 20 - - 79 - -1 4767 4752 4630 135 120 -4.44 0 - - - 0 99 - +3 4641 4668 4796 153 126 5.00 9 - - 9 - 90 - +2 4784 4871 5044 258 171 -0.33 0 - 0 - - 99 - +2 5135 5192 5338 201 144 1.59 0 - 0 - - 99 - -1 5763 5754 5626 135 126 -2.86 0 - 0 - 0 99 - +2 5468 5618 5821 351 201 -4.61 0 - 0 - - 99 - +1 6160 6238 6372 210 132 -6.58 0 0 0 - - 99 - +2 5822 5954 6376 552 420 -0.83 0 - 0 - - 99 - 0007 -2 6460 6319 3632 2826 2685 6.58 99 - - - - 99 - -1 6957 6930 6763 192 165 -4.94 0 - - - 0 99 - +1 6859 6877 7002 141 123 0.72 0 0 - - - 99 - 0008 -2 7267 7249 6722 543 525 8.49 99 - - - - 99 - +1 7003 7111 7389 384 276 -6.21 0 0 99 - - - - 0009 +2 7010 7220 7450 438 228 1.72 99 - 99 - - - - 0010 -2 7474 7474 7271 201 201 2.95 99 - - - - 99 - 0011 +3 7311 7416 7565 252 147 -3.28 99 - - 99 - - - +2 8042 8051 8212 168 159 -0.80 0 - 0 0 - - 99 -2 8410 8401 8273 135 126 -8.77 0 - - 0 - 0 99 +1 8344 8365 8505 159 138 -1.83 0 0 0 0 - - 99 0012 +3 7761 7941 8582 819 639 -3.50 0 - 0 0 - - 99 +1 8536 8554 8715 177 159 -5.07 0 0 - - - - 99 -2 9421 9397 9269 150 126 -6.62 0 - - 0 - 0 99 +3 9111 9348 9488 375 138 1.43 0 - - 0 - - 99 0013 -3 9653 9653 7455 2196 2196 12.37 99 - - - - - 99 0014 -3 9947 9893 9771 174 120 0.60 99 - - - - - 99 0015 -1 9993 9969 9817 174 150 6.92 99 - - - 99 - - +1 10000 10015 10155 153 138 -1.36 0 0 - 99 - - - -2 10303 10300 10175 126 123 -4.83 0 - - 99 - 0 - -3 10442 10439 10242 198 195 4.26 0 - - 99 - - 0 -2 10801 10795 10652 147 141 2.25 1 - 0 98 - 1 - +2 10562 10625 10873 309 246 -6.75 0 - 0 99 - - - -2 11329 11299 11147 180 150 3.02 0 - - 99 0 0 - -1 11340 11166 11035 303 129 -2.62 0 - - 99 0 - - 0016 +3 9975 9996 11420 1443 1422 9.52 99 - - 99 - - - +1 11827 12037 12309 480 270 -2.96 0 0 - - 99 - - 0017 -1 12429 12408 11521 906 885 10.54 99 - - - 99 - - +2 12473 12479 12601 126 120 -10.85 0 - 0 0 - - 99 +3 12450 12534 12680 228 144 -2.11 0 0 - 0 - - 99 0018 -3 13634 13586 12444 1188 1140 10.12 99 - - - - - 99 0019 -1 13710 13689 13552 156 135 2.79 99 - 0 - 99 - - 0020 +1 13639 13651 13782 141 129 -2.06 99 99 - - - - - 0021 -1 13953 13926 13783 168 141 5.46 99 - 0 - 99 - - 0022 +2 13751 13757 13978 225 219 -2.68 99 - 99 - - - - -2 14278 14254 14123 153 129 -1.88 0 99 - - 0 0 - +3 14154 14193 14360 204 165 -1.69 0 99 - 0 0 - - -1 14385 14235 14071 312 162 0.06 0 99 - - 0 - - 0023 +1 13822 13828 14700 876 870 10.83 99 99 - - - - - 0024 -3 14870 14750 14607 261 141 2.87 99 - - - - - 99 +3 14919 14925 15080 159 153 1.31 0 - - 0 - 99 - +2 15179 15179 15556 375 375 -2.89 0 - 0 - - 99 - +3 15519 15549 15722 201 171 -4.67 0 - - 0 - 99 - +2 15557 15788 15931 372 141 -1.40 0 - 0 0 - 99 - +1 15913 15913 16044 129 129 -6.39 0 0 - - - 99 - +2 16148 16163 16354 204 189 0.14 0 - 0 - - 99 - 0025 -2 16687 16663 14861 1824 1800 11.49 99 - - - - 99 - +3 16515 16530 16691 174 159 -3.51 0 - - 0 - 99 - 0026 -1 16875 16845 16684 189 159 2.22 99 - - - 99 - - 0027 +2 16781 16796 16942 159 144 2.02 99 - 99 - - - - -3 17279 17276 17013 264 261 -2.16 0 99 - - - - 0 -3 17483 17447 17289 192 156 -1.95 0 99 - - - - 0 -3 17747 17738 17586 159 150 1.72 0 99 - - 0 - 0 -2 17842 17818 17672 168 144 -4.66 0 99 - - 0 0 - -1 17946 17523 17377 567 144 -6.38 0 99 - - 0 - - -3 17993 17957 17829 162 126 0.35 0 99 - - - - 0 -1 18174 18165 17947 225 216 0.64 0 99 - - 0 - - -1 18378 18375 18175 201 198 -4.28 0 99 - - 0 - - +2 18221 18299 18421 198 120 -2.95 0 99 0 - - - - -1 18669 18516 18379 288 135 3.67 0 99 - - 0 - - -3 18917 18911 18777 138 132 -5.83 0 99 - - - - 0 +2 18950 19001 19234 282 231 -3.73 0 99 0 - - - - +3 19056 19062 19250 192 186 -5.55 0 99 - 0 - - - -1 19416 19392 19129 285 261 0.41 0 99 - - 0 - - -3 19829 19829 19653 174 174 -4.88 0 99 - - 0 - 0 -1 19848 19647 19453 393 192 -2.02 0 99 - - 0 - - -2 19957 19948 19775 180 171 -7.55 0 99 - - - 0 - 0028 +1 16939 16954 20061 3120 3105 12.05 99 99 - - - - - 0029 -1 20073 20064 19861 210 201 2.12 99 - - - 99 - - +3 20049 20133 20288 237 153 -10.18 0 99 - 0 0 - - -1 20349 20349 20116 231 231 -1.21 0 99 - - 0 - - +2 20222 20231 20377 153 144 -5.72 0 99 0 - - - - -2 20620 20593 20435 183 156 -5.02 0 99 - - - 0 - +2 20546 20570 20695 147 123 -4.99 0 99 0 - - - - -2 20809 20806 20621 186 183 0.91 0 99 - - 0 0 - -1 21147 20796 20590 555 204 -1.80 0 99 - - 0 - - -1 21306 21297 21148 156 147 -1.12 0 99 - - 0 - -