Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRQM010000211.1194.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRQM010000211.1194.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_QRQM010000211.1194.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_QRQM010000211.1194.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 3 3 479 474 474 9.67 99 - - 99 - - - +3 648 651 803 153 150 2.47 0 - - 0 - - 99 +3 804 840 971 165 129 -2.28 0 - - 0 - - 99 +2 947 968 1105 156 135 -11.89 0 - 0 0 - - 99 +1 1264 1267 1398 132 129 -7.04 0 0 - - - - 99 -2 1702 1600 1469 231 129 -5.34 0 - - 0 - 0 99 +3 1377 1629 1763 384 132 -4.37 0 - - 0 - - 99 0002 -3 1808 1805 570 1236 1233 8.90 99 - - - - - 99 0003 +1 1696 1732 1923 225 189 3.33 99 99 - - - - - +2 1835 1946 2203 366 255 -6.81 0 - 0 - 99 - - +1 2176 2179 2367 189 186 1.03 0 0 - - 99 - - -3 2582 2555 2322 258 231 -3.23 0 - - - 99 - 0 +1 2368 2524 2655 285 129 0.36 0 0 - - 99 - - +3 2610 2637 2771 159 132 -9.07 0 - - 0 99 0 - -2 2797 2791 2624 171 165 -5.84 0 - - - 99 0 - 0004 +2 2705 2732 2857 150 123 0.47 28 0 28 - 71 - - -2 2989 2980 2831 156 147 -11.30 0 - - - 99 0 - -3 3062 3020 2844 216 174 -6.82 0 - - - 99 - 0 +1 2869 3082 3228 357 144 -0.65 0 0 - - 99 - - +2 3512 3566 3721 207 153 -2.77 0 0 0 - 99 - - +1 3229 3640 3903 672 261 -1.02 0 0 - - 99 - - +2 3875 3911 4114 237 201 -5.95 0 0 0 - 99 - - +1 3904 3934 4128 222 192 -1.69 0 0 - - 99 - - 0005 -1 4272 4260 1831 2439 2427 4.36 99 - - - 99 - - 0006 +2 4115 4205 4345 228 138 4.11 99 - 99 - - - - 0007 -1 4581 4581 4402 177 177 1.27 97 2 - - 97 - - -3 4640 4604 4482 156 120 -4.41 0 2 - - - 97 0 0008 -2 4684 4672 4460 222 210 -1.25 99 - - - - 99 - 0009 -1 4851 4851 4699 150 150 2.95 99 - - - 99 - - -1 5214 5121 4987 225 132 -7.21 0 - 99 - 0 0 - -2 5290 5269 4970 318 297 -1.73 0 - 99 - - 0 - +3 5331 5400 5534 201 132 -9.22 0 - 99 0 - 0 - +3 5805 5862 6014 207 150 -14.61 0 - 99 0 - 0 - 0010 +2 4751 4775 6022 1269 1245 9.70 99 - 99 - - - - -2 6058 5944 5666 390 276 4.90 0 - 99 - - 0 - 0011 -2 6385 6214 6059 324 153 4.64 99 - - - - 99 - -3 6497 6356 6216 279 138 -4.08 0 - - 99 - 0 0 -3 6638 6626 6498 138 126 -8.70 0 - - 99 - 0 0 -2 6667 6565 6443 222 120 2.73 0 - - 99 - 0 - -3 6827 6824 6639 186 183 -0.62 0 - - 99 - - 0 -3 7016 6956 6828 186 126 -3.93 0 - - 99 - - 0 0012 +3 6072 6081 7034 960 951 11.46 99 - - 99 - - - 0013 +3 7035 7110 7262 225 150 3.61 50 49 - 50 - - - -1 7467 7353 7216 249 135 2.14 0 99 - - 0 - 0 -2 7630 7555 7223 405 330 -7.98 0 99 - - - 0 - -3 7784 7748 7608 174 138 -3.37 0 99 - - - - 0 +3 7674 7680 7838 162 156 -10.12 0 99 - 0 - - - 0014 +1 7102 7225 7866 762 639 9.36 99 99 - - - - - 0015 -3 8090 8003 7863 225 138 3.56 99 - - - - - 99 -1 8136 8085 7894 240 189 -9.83 0 - - - 0 - 99 -3 8339 8273 8112 225 159 -1.87 0 - - 99 - - 0 -2 8518 8503 8381 135 120 -9.08 0 - - 99 - 0 - -3 8864 8753 8442 420 309 0.04 0 - - 99 - - 0 -2 8971 8944 8804 165 138 -4.57 0 - - 99 - 0 - 0016 +3 7914 7926 8999 1083 1071 8.95 99 - - 99 - - - +3 9000 9060 9200 198 138 -7.81 0 - 99 0 - - - -2 9397 9361 9104 291 255 1.29 0 - 99 - - 0 - +3 9216 9243 9401 183 156 -3.54 0 - 99 0 - 0 - -1 9615 9540 9409 204 129 -0.43 0 - 99 - 0 0 - -2 9634 9526 9398 234 126 -1.07 0 - 99 - - 0 - 0017 +2 8984 8996 9970 984 972 11.47 99 - 99 - - - - -1 10182 10128 9988 192 138 -4.52 0 - - 99 0 - 0 -2 10681 10657 10511 168 144 -5.14 0 - - 99 - 0 0 -1 10818 10785 10615 201 168 -3.16 0 - - 99 0 - - -2 10903 10891 10727 174 162 -3.33 0 - - 99 - 0 - +1 10942 10945 11091 147 144 -4.07 0 0 - 99 - - - 0018 +3 9978 9990 11147 1167 1155 9.86 99 - - 99 - - - -3 11201 11129 10953 246 174 2.83 0 - - 99 - - 0 -3 11399 11363 11202 195 159 -5.98 0 - 99 - - - 0 -1 11406 11406 11251 153 153 -0.58 0 - 99 - 0 - - -2 11536 11488 11360 174 126 -3.95 0 0 99 - - 0 - -1 11559 11556 11407 150 147 1.71 0 - 99 - 0 - - 0019 +2 11138 11156 11842 702 684 10.23 99 - 99 - - - - 0020 -2 11905 11875 11738 165 135 9.21 99 - - - - 99 - -2 12166 12151 12017 147 132 -1.26 0 - - 99 - 0 - +1 12073 12103 12228 153 123 -1.56 0 0 - 99 - - - 0021 +3 11775 11826 12236 459 408 13.76 99 - - 99 - - - 0022 -3 12284 12278 12108 174 168 1.21 99 - - - - - 99 +3 12237 12348 12479 240 129 -5.71 0 - - 0 - 99 - 0023 -2 12520 12493 12332 186 159 6.21 99 - - - - 99 - 0024 +2 12404 12446 12574 168 126 1.51 99 - 99 - - - - -1 12822 12792 12652 168 138 -0.42 0 - 99 - 0 0 - -2 12898 12763 12605 291 156 1.71 0 - 99 - - 0 - 0025 +2 12575 12596 13249 672 651 13.81 99 - 99 - - - - 0026 -2 13276 13267 12899 375 366 -3.15 99 - - - - 99 - 0027 -1 13446 13404 13225 219 177 3.06 99 - - - 99 - - 0028 -2 13636 13549 13382 252 165 -6.94 99 - - - - 99 - -3 13718 13637 13455 261 180 0.06 0 - - 99 - 0 0 -3 14090 14075 13719 369 354 -0.22 0 - - 99 - - 0 +2 14231 14282 14419 186 135 -6.64 0 0 0 98 - - 1 0029 +3 13446 13464 14453 1005 987 10.34 99 - - 99 - - - +1 14254 14335 14457 201 120 -0.56 0 0 - - - - 99 +3 14454 14496 14648 192 150 -6.86 0 99 - 0 - - 0 -3 14810 14576 14454 354 120 -1.17 0 99 - 0 - - 0 +3 14670 14670 14942 270 270 -13.51 0 99 0 0 - - - -3 15128 14984 14811 315 171 -10.53 0 99 - - - - 0 0030 +1 14458 14473 15159 699 684 10.70 99 99 - - - - - -1 15171 15105 14968 201 135 -6.33 0 99 - 0 0 - 0 0031 +1 15394 15406 15717 321 309 9.52 99 99 - - - - - 0032 -3 15944 15725 15501 441 222 -1.18 99 - - - - - 99 +2 15767 15806 15979 210 171 -11.49 0 99 0 - - - - -1 16188 16122 15967 219 153 -2.33 0 99 - - 0 - - +2 16046 16058 16243 195 183 -7.43 0 99 0 - - - - -3 16325 16310 16176 147 132 -7.99 0 99 - - - 0 0 -1 16521 16383 16189 330 192 -0.71 0 99 - - 0 - - 0033 +1 15733 15763 16527 792 762 6.67 99 99 - - - - - +3 16587 16602 16751 162 147 -5.10 0 - 99 0 - - - -2 17104 17041 16874 228 165 -6.28 0 - 99 - - 0 - -1 17163 17139 16942 219 195 -2.18 0 - 99 - 0 - - +3 17094 17094 17243 147 147 -1.96 0 - 99 0 - - - -2 17368 17356 17153 213 201 2.35 0 - 99 - - 0 - -2 17614 17557 17369 243 186 -1.37 0 - 99 - - 0 - -1 17715 17562 17434 279 126 -4.35 0 - 99 - 0 0 - -3 18005 17996 17802 201 192 -0.98 0 - 99 - - - 0 -2 18136 18109 17972 162 135 -3.65 0 - 99 - 0 0 - -3 18227 18224 18066 159 156 -4.20 0 - 99 0 0 - 0 -1 18258 18216 17968 288 246 -5.21 0 - 99 - 0 - - +3 18015 18177 18335 318 156 -4.63 0 - 99 0 - - - -2 18400 18373 18221 177 150 -2.48 0 - 99 - - 0 - 0034 +2 16568 16574 18433 1863 1857 10.09 99 - 99 - - - - 0035 -2 18748 18658 18500 246 156 1.46 99 - - - - 99 - 0036 +2 18536 18548 18757 219 207 9.00 99 - 99 - - - - +1 18865 18937 19080 213 141 -0.98 0 0 - - - - 99 +2 19025 19073 19258 231 183 -7.20 0 - 0 0 - - 99 +1 19081 19102 19281 198 177 1.06 0 0 - - - - 99 +1 19405 19420 19611 204 189 -0.25 0 0 - - - - 99 -2 19912 19900 19778 132 120 -3.76 0 - - 0 - 0 99 0037 +3 19476 19476 20264 786 786 -1.57 0 - - 0 - - 99 0038 -3 20294 20282 18882 1410 1398 8.63 99 - - - - - 99 0039 +3 20313 20313 20483 168 168 0.49 99 - - 99 - - - +2 20747 20909 21046 297 135 -3.25 0 0 0 - 99 - - 0040 -1 21117 21096 20464 651 630 14.23 99 - - - 99 - -