Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_KQ9687371.686.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_KQ9687371.686.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_KQ9687371.686.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_KQ9687371.686.AOI_01 Sequence length = 21392 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 +1 1 64 243 240 177 -5.28 0 0 4 - - 95 - -1 384 303 121 261 180 -7.88 0 - 82 - 0 17 - +2 2 233 400 396 165 2.49 0 - 0 - - 99 - +3 240 270 407 165 135 -1.59 0 0 - 0 - 99 - +2 425 467 595 168 126 -6.08 0 - 0 - - 99 - +1 703 721 912 207 189 -3.82 0 0 - 99 - - - -3 926 899 774 150 123 -2.70 0 0 - 99 - - 0 -3 1097 1088 927 168 159 -5.90 0 - - 99 - 0 0 -2 1129 1129 788 339 339 -4.23 0 - - 99 - 0 - 0001 +3 672 687 1334 660 645 7.21 99 - - 99 - - - -2 1369 1294 1130 237 162 1.48 0 - - 99 - 0 - 0002 -1 1572 1500 1267 303 231 -1.03 99 - - - 99 - - 0003 -3 1676 1658 1512 162 144 -0.15 99 - - - - - 99 0004 +2 1748 1760 1966 216 204 25.80 99 - 99 - 0 - - -2 2032 1975 1817 213 156 -8.29 0 - - 99 0 0 - -3 2075 2063 1824 249 237 -4.69 5 - - - 94 - 5 0005 -1 2097 1806 1663 432 141 5.62 99 - - - 99 - - 0006 -1 2283 2220 2098 183 120 -3.16 55 - 44 - 55 - - 0007 +3 2265 2301 2429 162 126 1.67 98 1 - 98 - - - -3 2471 2450 2328 141 120 -0.31 0 0 - - 99 - 0 -3 2702 2687 2565 135 120 -4.46 1 0 7 - 91 - 1 +2 2402 2639 2782 378 141 -3.37 0 0 0 - 99 - - +2 2999 3035 3196 195 159 -1.07 0 0 0 - 99 - - 0008 +1 2305 2317 3450 1143 1131 -3.28 0 0 - - 99 - 0 -3 3494 3461 3300 192 159 -2.95 0 - - - 99 - 0 +2 3323 3467 3598 273 129 -3.10 0 0 0 - 91 8 - +1 3451 3487 3732 279 243 0.93 0 0 - - 99 - - +1 3853 3889 4041 186 150 2.31 0 0 - - 99 - - 0009 -1 4155 4146 2305 1848 1839 3.74 99 - - - 99 - - 0010 +2 3977 4034 4159 180 123 0.41 21 - 21 - 78 - - 0011 -1 4461 4401 4219 240 180 3.09 99 - - - 99 - - +1 4459 4459 4686 225 225 -3.02 0 0 99 - - - - +3 4644 4683 4823 177 138 -7.94 0 0 99 0 - - - -3 5036 4976 4830 204 144 -1.60 0 - 99 - - - 0 -1 5127 5064 4942 183 120 -3.24 0 - 99 - 0 - - +3 5211 5211 5345 132 132 -9.76 0 0 99 0 - - - +1 5041 5053 5355 312 300 -3.63 0 0 99 - - - - -3 5408 5408 5247 159 159 -1.83 1 - 98 - - - 1 -3 5549 5540 5409 138 129 -6.31 0 - 99 - - - 0 +1 5425 5488 5619 192 129 3.96 0 0 99 - - - - -2 5755 5749 5606 147 141 -0.47 0 - 99 - - 0 - 0012 +2 4328 4343 6106 1776 1761 5.99 99 - 99 - - - - 0013 -2 6184 6184 5993 189 189 0.69 99 - - - - 99 - 0014 +3 6078 6093 6230 150 135 10.62 99 - - 99 - - - -3 6512 6482 6357 153 123 -3.90 0 - 90 - - 9 0 +3 6423 6534 6665 240 129 -3.28 0 - 98 0 - 1 - -2 6775 6544 6209 564 333 0.83 0 - 99 - - 0 - +3 6666 6672 6839 171 165 -8.26 0 - 99 0 - - - 0015 -2 7369 7036 6776 591 258 -2.06 97 - 2 - - 97 - -2 7909 7771 7538 369 231 -2.60 4 - 95 - - 4 - 0016 +2 6137 6143 7969 1830 1824 0.85 99 - 99 - - - - 0017 -3 8003 7973 7848 153 123 -2.44 99 - - - - - 99 0018 -1 8022 7989 7864 156 123 0.43 75 - - - 75 - 24 0019 -1 8181 8151 8023 156 126 9.80 99 - - - 99 - - 0020 -3 8468 8465 8343 123 120 5.19 38 - - - 61 - 38 -3 8747 8696 8553 192 141 0.88 0 0 0 - 99 - 0 +3 8655 8661 8858 201 195 -1.03 0 - - 0 99 - - -3 8948 8933 8808 138 123 -4.18 0 - - - 99 - 0 +3 9177 9243 9368 189 123 1.70 0 - - 0 99 - - 0021 -1 9867 9858 8212 1653 1644 13.30 99 - - - 99 - - +2 10289 10307 10432 141 123 0.87 0 - 0 - - 99 - +3 10440 10461 10598 156 135 -5.16 0 - - 0 0 99 - -1 10632 10581 10429 201 150 -5.74 0 - - - 0 99 - +2 10655 10658 10798 141 138 2.86 0 - 0 - - 99 - +1 11005 11209 11397 390 186 1.81 0 0 - - - 99 - 0022 -2 11413 11395 9998 1413 1395 14.74 99 - - - - 99 - 0023 +2 11582 11588 11728 144 138 4.62 99 - 99 - - - - +2 11915 11918 12049 132 129 0.70 0 - 0 - - 99 - 0024 -2 12643 12637 11681 960 954 12.44 99 - - - - 99 - -2 13138 12997 12815 321 180 6.52 0 - - 99 - 0 - 0025 +3 12807 12846 13475 666 627 11.26 99 - - 99 - - - +2 13994 14006 14182 186 174 6.21 0 - 0 - - - 99 0026 -3 14363 14333 13497 864 834 14.94 99 - - - - - 99 0027 -2 14494 14485 14330 162 153 8.82 99 - - - - 99 - +2 15098 15107 15256 156 147 -1.45 0 - 0 - 99 - - 0028 -1 15366 15357 14371 993 984 15.73 99 - - - 99 - - 0029 +1 15160 15274 15417 255 141 5.68 99 99 - - - - - +1 15418 15472 15669 249 195 -0.95 0 0 - - - - 99 +2 15803 15890 16018 213 126 0.60 0 - 0 - - - 99 +2 16298 16325 16486 186 159 5.99 0 - 0 - - - 99 0030 -3 16577 16565 15429 1146 1134 14.56 99 - - - - - 99 +2 16568 16760 16888 318 126 6.84 0 - 0 - 99 - - +1 17155 17239 17376 219 135 4.74 0 0 - - 99 - - 0031 -1 17460 17445 16570 888 873 16.78 99 - - - 99 - - +2 17588 17588 17731 141 141 -3.68 0 - 0 - - 99 - 0032 -2 18637 18634 17465 1170 1167 14.54 99 - - - - 99 - +2 18935 18971 19111 174 138 3.29 0 - 0 - - 99 - -1 19392 19377 19201 189 174 4.24 0 - - - 0 99 - -1 19782 19776 19654 126 120 -2.19 0 - - - 0 99 - +2 19673 19688 19912 237 222 -8.64 0 - 0 - - 99 - 0033 -2 19942 19903 18662 1278 1239 14.33 99 - - - - 99 - +1 20014 20023 20160 144 135 1.45 0 0 - - 99 - - -3 20264 20219 20055 207 162 -0.90 0 - - - 99 - 0 -3 20567 20474 20346 219 126 -1.80 0 0 - - 99 - 0 +1 20350 20398 20592 240 192 -3.39 0 0 - - 99 - - +2 20456 20489 20635 177 144 -7.18 0 - 0 - 99 - - +3 20538 20550 20687 147 135 -4.49 0 - - 0 99 - - 0034 -1 20712 20709 19900 810 807 7.60 99 - - - 99 - - +3 20862 20943 21086 222 141 -0.05 0 - - 0 - 99 - +2 20975 21050 21235 258 183 0.15 0 - 0 - - 99 - 0035 -2 21256 21226 20732 522 492 10.06 99 - - - - 99 - 0036 -1 21390 21369 21238 150 129 9.78 99 0 - - 99 - -