Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_CP0413791.691.AOI_02.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_CP0413791.691.AOI_02 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_CP0413791.691.AOI_02.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0413791.691.AOI_02 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 -3 323 311 174 147 135 2.16 99 - - - - - 99 +2 434 437 589 153 150 3.08 0 - 0 - - 99 - +2 590 626 757 165 129 -1.96 0 - 0 - - 99 - +1 733 754 891 156 135 -12.65 0 0 0 - - 99 - +3 1050 1053 1184 132 129 -8.67 0 - - 0 - 99 - -1 1488 1386 1255 231 129 -4.35 0 - 0 - 0 99 - +2 1163 1223 1495 330 270 -3.16 0 - 0 - - 99 - 0002 -2 1594 1591 356 1236 1233 8.55 99 - - - - 99 - +3 1620 1836 1967 345 129 -3.14 0 - - 0 - 99 - -1 2106 2055 1921 183 132 -3.40 0 - - - 0 99 - +2 1952 1964 2152 198 186 1.97 0 - 0 - - 99 - -1 2367 2256 2107 258 147 -7.30 0 - - - 0 99 - +2 2153 2309 2440 285 129 1.82 3 - 3 - - 96 - +1 2395 2422 2556 159 132 -7.92 0 0 - - - 99 0 -3 2582 2567 2409 171 156 -5.43 0 - - - - 99 0 +3 2490 2517 2642 150 123 0.28 9 - 0 9 - 90 - -3 2774 2765 2616 156 147 -10.30 0 - 0 - - 99 0 -1 2847 2805 2629 216 174 -8.70 0 - 0 - 0 99 - +2 2441 2867 3013 570 144 -1.04 0 - 0 - - 99 - +3 3297 3393 3584 285 189 -1.53 0 - 0 0 - 99 - +2 3014 3425 3688 672 261 1.03 0 - 0 - - 99 - +3 3660 3696 3899 237 201 -7.44 0 - 0 0 - 99 - +2 3689 3701 3913 222 210 -1.00 0 - 0 - - 99 - 0003 -2 4114 4075 1616 2496 2457 4.86 99 - - - - 99 - +3 3900 3990 4118 216 126 4.96 9 - - 9 - 90 - 0004 -1 4365 4347 4186 177 159 0.84 95 4 - - 95 - - -3 4424 4388 4266 156 120 -2.20 0 5 - - - 93 0 0005 +1 4429 4450 4599 168 147 -0.59 99 99 - - - - - 0006 -3 4700 4700 4548 150 150 3.74 99 - - - - - 99 -3 5063 4970 4836 225 132 -7.28 0 99 - - 0 - 0 -1 5139 5118 4819 318 297 -0.54 0 99 - - 0 - - +2 5180 5249 5383 201 132 -9.29 0 99 0 - 0 - - +2 5654 5711 5863 207 150 -14.08 0 99 0 - 0 - - 0007 +1 4600 4624 5871 1269 1245 9.31 99 99 - - - - - 0008 -3 5915 5912 5790 123 120 -8.24 39 - - - 60 - 39 -1 5922 5793 5515 405 276 6.19 0 99 - - 0 - - 0009 -1 6249 6195 5923 324 270 2.08 99 - - - 99 - - -2 6361 6331 6080 279 249 0.45 0 - 99 - - 0 - -2 6502 6490 6362 138 126 -8.18 0 - 99 - 0 0 - -1 6531 6429 6307 222 120 1.12 0 - 99 - 0 - - -2 6691 6688 6503 186 183 0.14 0 - 99 - - 0 - -2 6880 6820 6692 186 126 -2.19 0 - 99 - - 0 - 0010 +2 5936 5945 6898 960 951 11.83 99 - 99 - - - - 0011 +2 6899 6902 7072 171 168 1.44 99 - 99 - - - - -3 7412 7298 7161 249 135 2.15 0 - - 99 - 0 0 -1 7584 7491 7168 414 321 -8.55 0 - - 99 0 - - -2 7729 7693 7553 174 138 -3.00 0 - - 99 - 0 - 0012 +3 6966 7038 7811 843 771 9.36 99 - - 99 - - - 0013 -3 8081 8030 7839 240 189 -9.86 99 - - - - - 99 -2 8284 8257 8057 225 198 -1.19 0 - 99 - - 0 - -1 8463 8448 8326 135 120 -7.67 0 0 99 - 0 0 - -2 8809 8752 8285 522 465 0.36 0 - 99 - - 0 - -1 8916 8889 8749 165 138 -4.14 0 - 99 - 0 - - 0014 +2 7859 7871 8944 1083 1071 9.86 99 - 99 - - - - +2 8945 9005 9145 198 138 -8.68 0 99 0 - - - - -1 9309 9306 9049 258 255 1.54 0 99 - - 0 - - +2 9161 9188 9313 150 123 -1.51 0 99 0 - 0 - - -3 9560 9485 9354 204 129 -1.44 0 99 - - 0 - 0 -1 9579 9471 9343 234 126 0.20 0 99 - - 0 - - -1 9867 9849 9718 147 129 3.00 0 99 - - 0 - - 0015 +1 8929 8941 9915 984 972 11.43 99 99 - - - - - -3 10181 10151 9987 192 162 -5.73 0 - 99 - - 0 0 -1 10680 10656 10510 168 144 -5.84 0 - 99 - 0 0 - -3 10817 10784 10614 201 168 -4.12 0 - 99 - - - 0 -2 10837 10798 10658 177 138 -0.27 0 - 99 - - 0 0 -1 10902 10890 10726 174 162 -3.14 0 - 99 - 0 - - +3 10941 10944 11090 147 144 -6.19 0 - 99 0 - - - 0016 +2 9977 9989 11146 1167 1155 10.08 99 - 99 - - - - 0017 -2 11200 11155 10952 246 201 2.42 99 - - - - 99 - -2 11398 11362 11201 195 159 -5.99 0 99 - - - 0 - -3 11405 11405 11250 153 153 -1.12 0 99 - - - - 0 -3 11558 11555 11406 150 147 -0.90 0 99 - - - - 0 +2 11621 11624 11773 150 147 2.08 0 99 0 - - - - 0018 +1 11152 11155 11844 690 687 9.72 99 99 - - - - - 0019 -1 11904 11874 11737 165 135 7.05 99 - - - 99 - - -1 12165 12150 12016 147 132 -3.63 0 - 99 0 0 - - +3 12000 12060 12227 225 165 0.45 0 - 99 0 - - - 0020 +2 11774 11825 12235 459 408 9.40 99 - 99 - - - - 0021 -2 12283 12262 12107 174 153 0.38 99 - - - - 99 - 0022 +2 12236 12254 12478 240 222 -3.38 99 - 99 - - - - 0023 -1 12519 12492 12331 186 159 5.75 99 - - - 99 - - 0024 +1 12403 12445 12573 168 126 -0.14 99 99 - - - - - -3 12821 12791 12651 168 138 0.18 0 99 - - 0 - 0 -1 12897 12762 12604 291 156 1.22 0 99 - - 0 - - 0025 +1 12574 12595 13248 672 651 14.24 99 99 - - - - - 0026 -1 13275 13266 12898 375 366 -2.32 99 - - - 99 - - -1 13446 13404 13276 168 126 4.84 4 95 - - 4 - - 0027 -2 13636 13549 13382 252 165 -7.19 99 - - - - 99 - -3 13718 13637 13455 261 180 0.78 0 - - 99 - 0 0 -3 14090 14075 13719 369 354 0.40 0 - - 99 - - 0 +2 14231 14282 14419 186 135 -6.46 0 - 0 99 - - 0 0028 +3 13446 13464 14453 1005 987 10.53 99 - - 99 - - - +1 14290 14335 14457 165 120 -1.90 0 0 - - - - 99 +3 14454 14496 14648 192 150 -5.97 0 99 - 0 - - 0 -3 14810 14576 14454 354 120 -2.08 0 99 - 0 - - 0 +3 14670 14670 14840 168 168 -11.68 0 99 0 0 - - - -1 14967 14931 14764 201 165 -2.93 0 99 0 - 0 - - +2 14657 14837 14971 312 132 -8.24 0 99 0 - 0 - 0 -3 15128 14984 14811 315 171 -8.77 0 99 - - - - 0 0029 +1 14458 14473 15159 699 684 11.41 99 99 - - - - - -1 15171 15105 14968 201 135 -5.56 0 99 - 0 0 - 0 0030 +1 15394 15406 15717 321 309 10.93 99 99 - - - - - 0031 -3 15944 15746 15501 441 243 -1.72 99 - - - - - 99 +2 15767 15806 15979 210 171 -11.36 0 99 0 - 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99 - - - - 0036 -2 18748 18658 18500 246 156 1.48 99 - - - - 99 - 0037 +2 18536 18548 18757 219 207 8.82 99 - 99 - - - - +1 18865 18937 19080 213 141 -1.37 0 0 - 0 - - 99 +3 18882 18996 19199 315 201 -3.85 0 - - 0 - - 99 +2 19025 19046 19225 198 177 -7.61 0 - 0 - - - 99 +1 19081 19102 19281 198 177 0.48 0 0 - - - - 99 +1 19405 19420 19611 204 189 -0.05 0 0 - - - - 99 -2 19912 19900 19778 132 120 -5.07 0 - - 0 - 0 99 0038 +3 19476 19476 20264 786 786 -1.36 0 - - 0 - - 99 0039 -3 20294 20282 18882 1410 1398 8.18 99 - - - - - 99 0040 +3 20313 20313 20483 168 168 -1.17 99 - - 99 - - - +2 20747 20909 21046 297 135 -4.84 0 0 0 - 99 - - 0041 -1 21117 21096 20464 651 630 14.14 99 - - - 99 - -