Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_CP0413791.691.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_CP0413791.691.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_CP0413791.691.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_CP0413791.691.AOI_01 Sequence length = 21224 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 329 317 186 141 129 -5.28 0 99 - - 0 - 0 -3 704 686 510 192 174 -5.51 0 99 - - 0 - 0 -3 1046 962 807 237 153 -6.11 0 99 - - 0 - 0 0001 -1 1140 1080 85 1053 993 -0.71 0 99 - - 0 - - +2 1220 1223 1390 168 165 -5.51 0 99 0 - - - - -3 1502 1469 1293 207 174 0.55 0 99 - - 0 - 0 -1 1914 1578 1255 657 321 -2.53 0 99 - - 0 - - -1 2157 2151 1915 240 234 -1.84 0 99 - - 0 - - 0002 +1 1 109 2262 2259 2151 8.09 99 99 - - - - - 0003 -2 2368 2365 2231 135 132 1.65 99 - - - - 99 - -3 2513 2477 2352 159 123 0.10 0 - - 99 - - 0 0004 +1 2359 2371 2559 198 186 6.77 99 99 - - - - - +1 2560 2719 2841 279 120 -4.16 0 0 - - - 99 - +3 2916 2922 3047 129 123 0.69 0 - 0 0 - 99 - +2 2846 2948 3070 222 120 -0.57 0 0 0 - - 99 - +3 3258 3258 3389 129 129 -1.45 0 - 0 0 - 99 - +2 3125 3134 3517 390 381 1.75 0 - 0 - - 99 - 0005 -2 3565 3511 2594 969 915 11.68 99 - - - - 99 - +3 3555 3594 3800 243 204 -4.18 0 - - 0 - - 99 -2 4102 4081 3950 150 129 -4.85 0 - - - - 0 99 +3 3975 4224 4352 375 126 1.19 0 - - 0 - - 99 +1 4258 4264 4404 144 138 -5.64 0 0 - - - - 99 -2 4546 4486 4349 195 135 -7.15 0 - - 1 - 0 98 +3 4353 4401 4619 264 216 2.29 4 - - 4 - - 95 -2 4684 4669 4547 135 120 -4.31 0 - - - - 0 99 0006 +1 4558 4585 4713 153 126 5.65 15 15 - - - - 84 +3 4701 4788 4961 258 171 -0.52 0 - - 0 - - 99 +3 5052 5109 5255 201 144 1.24 0 - - 0 - - 99 -2 5680 5671 5543 135 126 -3.29 0 - - 0 - 0 99 +3 5385 5535 5738 351 201 -4.23 0 - - 0 - - 99 +2 6077 6155 6289 210 132 -6.85 0 - 0 0 - - 99 +3 5739 5871 6293 552 420 -1.14 0 - - 0 - - 99 0007 -3 6377 6236 3549 2826 2685 6.50 99 - - - - - 99 -2 6874 6847 6680 192 165 -5.67 0 - - - - 0 99 +2 6776 6794 6919 141 123 0.06 0 - 0 - - - 99 0008 -3 7184 7166 6639 543 525 8.31 99 - - - - - 99 +2 6920 7028 7306 384 276 -5.87 0 - 0 99 - - - 0009 +3 6927 7137 7367 438 228 1.53 99 - - 99 - - - 0010 -3 7391 7391 7188 201 201 3.06 99 - - - - - 99 0011 +1 7228 7333 7482 252 147 -3.11 99 99 - - - - - +3 7959 7968 8129 168 159 -1.00 0 0 - 0 99 - - -3 8327 8318 8190 135 126 -9.35 0 0 - - 99 - 0 +2 8261 8282 8422 159 138 -1.49 0 0 0 0 99 - - 0012 +1 7678 7858 8499 819 639 -3.16 0 0 - 0 99 - - +2 8453 8471 8632 177 159 -5.24 0 - 0 - 99 - - -3 9338 9314 9186 150 126 -7.46 0 0 - - 99 - 0 +1 9028 9265 9405 375 138 1.99 0 0 - - 99 - - 0013 -1 9570 9570 7372 2196 2196 12.16 99 - - - 99 - - 0014 -1 9864 9810 9688 174 120 1.34 99 - - - 99 - - 0015 -2 9910 9886 9734 174 150 7.00 99 - - - - 99 - +2 9917 9932 10072 153 138 -0.84 0 99 0 - - - - -3 10220 10217 10092 126 123 -4.84 0 99 - - - - 0 -1 10359 10356 10159 198 195 3.67 0 99 - - 0 - - -3 10718 10712 10569 147 141 1.22 0 99 - 0 - - 0 +3 10479 10542 10790 309 246 -7.46 0 99 - 0 - - - -3 11246 11216 11064 180 150 3.28 0 99 - - - 0 0 -2 11257 11083 10952 303 129 -2.88 0 99 - - - 0 - 0016 +1 9892 9913 11337 1443 1422 9.74 99 99 - - - - - +2 11744 11954 12226 480 270 -3.03 0 - 0 - - 99 - 0017 -2 12346 12325 11438 906 885 10.13 99 - - - - 99 - +3 12390 12396 12518 126 120 -10.81 0 0 - 0 99 - - +1 12367 12451 12597 228 144 -2.02 0 0 0 - 99 - - 0018 -1 13551 13503 12361 1188 1140 10.11 99 - - - 99 - - 0019 -2 13627 13606 13469 156 135 1.85 97 - - 2 - 97 - 0020 +2 13556 13568 13699 141 129 -1.35 99 - 99 - - - - 0021 -2 13870 13843 13700 168 141 5.20 99 - - 0 - 99 - 0022 +3 13668 13674 13895 225 219 -2.42 99 - - 99 - - - -3 14195 14171 14040 153 129 -0.95 0 - 99 - - 0 0 +1 14071 14110 14277 204 165 -2.20 0 0 99 - - 0 - -2 14302 14152 13988 312 162 -0.09 0 - 99 - - 0 - 0023 +2 13739 13745 14617 876 870 10.75 99 - 99 - - - - 0024 -1 14787 14667 14524 261 141 3.15 99 - - - 99 - - +1 14836 14842 14997 159 153 1.23 0 0 - - - - 99 +3 15096 15096 15473 375 375 -2.46 0 - - 0 - - 99 +1 15436 15466 15639 201 171 -4.77 0 0 - - - - 99 +3 15474 15705 15848 372 141 -0.49 0 0 - 0 - - 99 +2 15830 15830 15961 129 129 -6.02 0 - 0 - - - 99 +3 16065 16080 16271 204 189 0.37 0 - - 0 - - 99 0025 -3 16604 16580 14778 1824 1800 11.46 99 - - - - - 99 +1 16432 16447 16608 174 159 -2.74 0 0 - - - - 99 0026 -2 16792 16762 16601 189 159 2.25 99 - - - - 99 - 0027 +3 16698 16713 16859 159 144 2.20 99 - - 99 - - - -1 17196 17193 16930 264 261 -2.35 0 - 99 - 0 - - -1 17400 17364 17206 192 156 -1.02 0 - 99 - 0 - - -1 17664 17655 17503 159 150 1.47 0 - 99 - 0 0 - -3 17759 17735 17589 168 144 -4.56 0 - 99 - - 0 0 -2 17863 17440 17294 567 144 -5.94 0 - 99 - - 0 - -1 17910 17874 17746 162 126 -0.22 0 - 99 - 0 - - -2 18091 18019 17864 225 153 0.77 0 - 99 - - 0 - -2 18295 18292 18092 201 198 -3.17 0 - 99 - - 0 - +3 18138 18216 18338 198 120 -2.92 0 - 99 0 - - - -2 18586 18433 18296 288 135 3.22 0 - 99 - - 0 - -1 18834 18828 18694 138 132 -5.04 0 - 99 - 0 - - +1 18973 18979 19116 141 135 -5.92 0 0 99 0 - - - +3 18867 18918 19151 282 231 -3.48 0 - 99 0 - - - -2 19216 19192 19046 168 144 0.07 0 - 99 - - 0 - -3 19262 19256 19134 126 120 -4.48 0 - 99 - - - 0 -2 19708 19564 19439 267 123 0.10 0 - 99 - - 0 - -1 19746 19746 19570 174 174 -4.80 0 - 99 - 0 - - -3 19874 19865 19692 180 171 -5.97 0 - 99 - - - 0 0028 +2 16856 16871 19978 3120 3105 12.09 99 - 99 - - - - 0029 -2 19990 19981 19778 210 201 2.92 99 - - - - 99 - +1 19966 20050 20205 237 153 -10.40 0 0 99 - - 0 - -2 20266 20266 20033 231 231 -1.92 0 - 99 - - 0 - +3 20139 20148 20294 153 144 -5.53 0 - 99 0 - - - -3 20537 20510 20352 183 156 -5.14 0 - 99 - - - 0 +3 20463 20487 20612 147 123 -4.58 0 - 99 0 - - - -3 20726 20723 20538 186 183 0.14 0 - 99 - - 0 0 -2 21064 20713 20507 555 204 -1.27 0 - 99 - - 0 - -2 21223 21214 21065 156 147 -0.08 0 - 99 - - 0 -