Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_ABJL020000081.1.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_ABJL020000081.1.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_ABJL020000081.1.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_ABJL020000081.1.AOI_01 Sequence length = 21311 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 386 356 192 192 162 -5.10 0 - - - 99 - 0 +3 288 306 431 141 123 2.42 0 - - 0 99 - - 0001 -1 696 678 151 543 525 5.52 99 - - - 99 - - +3 432 540 707 273 165 -4.45 0 99 - 0 - - - 0002 +2 668 704 826 156 120 2.26 29 2 29 - - 67 - 0003 +1 439 517 1101 660 582 3.49 99 99 - - - - - +3 978 1098 1298 318 198 -10.70 0 - 75 0 24 - - 0004 -1 1320 1131 994 324 135 0.50 96 - 3 0 96 - - 0005 +2 935 1094 1324 387 228 -2.21 92 - 92 - 7 - - 0006 +1 1180 1219 1350 168 129 -1.36 99 99 - - - - - +1 1351 1489 1764 411 273 2.71 0 0 - - - - 99 -2 1825 1825 1703 120 120 -15.27 0 - - 0 - 0 99 +3 1506 1623 1880 372 255 -3.95 0 - - 0 - - 99 0007 -3 2063 1898 1347 714 549 5.84 99 - - - - - 99 +1 1765 1924 2073 306 147 -3.64 0 0 0 - - 99 - +2 1832 1910 2086 252 174 -1.23 0 - 0 - - 99 - +3 2010 2118 2246 234 126 -3.01 0 - - 0 - 99 - +3 2250 2382 2513 261 129 -8.48 0 - 0 0 - 99 - +2 2144 2453 2701 555 246 -1.98 0 - 0 - - 99 - +3 2814 2916 3068 252 150 -1.50 0 - 0 0 - 99 - 0008 -2 3133 3118 1826 1305 1290 4.66 99 - - - - 99 - 0009 +2 2840 3011 3196 354 183 -0.56 99 - 99 - - - - 0010 -3 3338 3257 3123 213 132 6.79 99 - - - - - 99 0011 +2 3425 3437 3589 162 150 1.02 99 - 99 - - - - +1 4066 4075 4236 168 159 1.71 0 0 0 - - 99 - -1 4434 4425 4297 135 126 -10.86 0 - 0 - 0 99 - +3 4368 4389 4529 159 138 -0.60 0 0 0 0 - 99 - 0012 +2 3785 3965 4606 819 639 -2.64 0 0 0 - - 99 - -1 5445 5421 5293 150 126 -4.63 0 - 0 - 0 99 - +2 5135 5372 5512 375 138 1.79 0 - 0 - - 99 - 0013 -2 5677 5677 3479 2196 2196 12.26 99 - - - - 99 - +1 6004 6157 6351 345 192 0.72 0 0 - - 99 - - +1 6352 6538 6954 600 414 1.18 0 0 - - 99 - - +1 6955 6979 7281 324 300 0.66 0 0 - - 99 - - -3 7562 7562 7434 126 126 -7.02 0 0 - - 99 - 0 +1 7282 7444 7704 420 258 -0.45 0 0 - - 99 - - +1 7705 7753 7953 246 198 -6.07 0 0 0 - 99 - - +2 7742 7841 7975 231 132 4.36 0 - 0 - 99 - - 0014 -1 8061 8031 5710 2349 2319 12.19 99 - - - 99 - - 0015 -3 8477 8378 8244 231 132 5.29 99 - - - - - 99 -2 8563 8497 8303 258 192 0.67 0 99 - - - 0 - -2 9439 9418 9296 141 120 4.47 0 99 - - - 0 - -1 9537 9519 9397 138 120 3.09 0 99 - - 0 - - -3 9767 9758 9459 306 297 4.54 0 99 - - - - 0 0016 +1 8257 8266 9873 1614 1605 9.93 99 99 - - - - - -1 9936 9795 9649 285 144 3.07 0 99 - - 0 - - 0017 -2 9949 9940 9818 129 120 -0.29 91 - - - 2 91 6 0018 -3 9959 9929 9792 165 135 -4.37 16 - - - 83 - 16 +3 10002 10017 10157 153 138 1.52 0 - 99 0 - - - -3 10406 10328 10185 219 141 -4.08 0 - 99 - - - 0 +3 10374 10383 10577 201 192 -1.89 0 - 99 0 - - - -1 10821 10707 10510 309 195 0.99 0 - 99 - 0 - - +1 10600 10771 10899 297 126 -4.75 0 0 99 - - - - -2 11023 11020 10850 171 168 4.57 0 - 99 - - 0 - -1 11331 11301 11149 180 150 0.14 0 - 99 - 0 - 0 -3 11342 11168 10944 396 222 1.58 0 - 99 - - - 0 0019 +2 9977 9998 11422 1443 1422 9.68 99 - 99 - - - - +3 11829 12039 12311 480 270 -1.26 0 - - 0 - - 99 +2 12191 12308 12448 255 138 -1.44 0 - 0 - - - 99 0020 -3 12452 12407 11523 927 882 9.97 99 - - - - - 99 0021 -1 12621 12600 12445 174 153 0.76 99 - - - 99 - - +2 12581 12719 12904 321 183 2.32 0 - 0 - - 99 - -1 13146 13140 13000 144 138 0.24 0 - 0 - 0 99 - +2 12905 13304 13540 633 234 -2.68 0 - 0 - - 99 - +1 13405 13429 13713 306 282 4.90 0 0 - - - 99 - +2 13607 13664 13822 213 156 2.65 0 - 0 - - 99 - 0022 -2 14209 14104 12461 1746 1641 10.09 99 - - - - 99 - 0023 +3 13989 14013 14216 225 201 0.02 99 - - 99 - - - +1 14020 14197 14343 321 144 -2.10 0 0 0 - 99 - - 0024 -1 15297 15285 14125 1170 1158 9.40 99 - - - 99 - - 0025 -2 15373 15352 15215 156 135 1.15 95 - - 4 - 95 - 0026 +2 15302 15314 15445 141 129 -2.01 99 - 99 - - - - 0027 -2 15616 15589 15446 168 141 5.86 99 - - 0 - 99 - 0028 +3 15414 15420 15641 225 219 -1.72 99 - - 99 - - - -3 15941 15917 15786 153 129 -0.91 0 - 99 - - 0 0 -2 16048 15898 15734 312 162 1.82 0 - 99 - - 0 - 0029 +2 15485 15491 16363 876 870 10.65 99 - 99 - - - - 0030 -1 16533 16413 16270 261 141 3.05 99 - - - 99 - - +3 16842 16842 17009 165 165 1.80 0 - - 0 - - 99 -1 17202 17202 17050 150 150 -5.56 0 - - 0 0 - 99 +3 17010 17079 17219 207 138 -10.93 0 - - 0 - - 99 +3 17313 17451 17699 384 246 -1.76 0 - - 0 - - 99 +2 17576 17576 17707 129 129 -6.40 0 - 0 - - - 99 +3 17811 17826 18017 204 189 0.59 0 - - 0 - - 99 0031 -3 18350 18326 16524 1824 1800 11.99 99 - - - - - 99 +1 18178 18193 18354 174 159 -1.56 0 0 - - - - 99 0032 -1 18423 18384 18235 186 147 1.43 99 - - - 99 - - 0033 +3 18444 18459 18605 159 144 2.11 99 - - 99 - - - -1 18942 18939 18676 264 261 -3.04 0 - 99 - 0 - - -1 19146 19101 18952 192 147 -2.37 0 - 99 - 0 0 - -2 19372 19045 18920 450 123 3.44 0 - 99 - - 0 - -1 19410 19401 19249 159 150 2.15 0 - 99 - 0 - - -3 19505 19481 19335 168 144 -2.60 0 - 99 - - - 0 -2 19609 19495 19373 234 120 -8.49 0 - 99 - - 0 0 -1 19656 19620 19492 162 126 -0.10 0 - 99 - 0 - - -2 19837 19828 19649 186 177 2.90 0 - 99 - - 0 - -2 20041 20038 19838 201 198 -1.83 0 - 99 - - 0 - +3 19884 19962 20084 198 120 -2.65 0 - 99 0 - - - -2 20332 20179 20042 288 135 1.38 0 - 99 - - 0 - -1 20580 20574 20440 138 132 -7.28 0 - 99 - 0 - - +3 20613 20757 20897 282 138 -0.52 0 0 99 0 - - - -2 21079 21055 20792 285 261 0.02 0 - 99 - - 0 - -2 21310 21310 21116 192 192 -2.92 0 - 99 - - 0 -