Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_ABJL020000061.0.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_ABJL020000061.0.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/NZ_ABJL020000061.0.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_intestinalis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_ABJL020000061.0.AOI_01 Sequence length = 21119 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +2 2 104 421 417 315 5.16 99 - 99 - - - - 0002 -1 483 471 334 147 135 1.31 99 - - - 99 - - +3 594 597 749 153 150 1.67 0 - - 0 - - 99 +3 750 786 917 165 129 -2.57 0 - - 0 - - 99 +2 893 914 1051 156 135 -10.93 0 - 0 0 - - 99 +1 1210 1213 1344 132 129 -7.09 0 0 - - - - 99 -2 1648 1546 1415 231 129 -5.29 0 - - 0 - 0 99 +3 1323 1575 1709 384 132 -3.98 0 - - 0 - - 99 0003 -3 1754 1751 516 1236 1233 9.98 99 - - - - - 99 0004 +1 1642 1678 1869 225 189 2.97 99 99 - - - - - +2 1781 1892 2149 366 255 -6.31 0 - 0 - 99 - - +1 2122 2125 2313 189 186 0.90 0 0 - - 99 - - -3 2528 2501 2268 258 231 -3.86 0 - - - 99 - 0 +1 2314 2455 2601 285 144 -0.31 0 0 - - 99 - - +3 2556 2583 2717 159 132 -6.50 0 - - 0 99 0 - -2 2743 2737 2570 171 165 -6.62 0 - - - 99 0 - +2 2651 2678 2803 150 123 0.54 0 0 0 - 99 - - -2 2935 2926 2777 156 147 -11.00 0 - - - 99 0 - -3 3008 2966 2790 216 174 -7.64 0 - - - 99 - 0 +1 2815 2986 3174 357 186 -1.06 0 0 - - 99 - - +2 3458 3554 3745 285 189 -0.27 0 0 0 - 99 - - +1 3175 3586 3849 672 261 -0.69 0 0 - - 99 - - +2 3821 3857 4060 237 201 -6.49 0 0 0 - 99 - - +1 3850 3862 4074 222 210 -0.90 0 0 - - 99 - - 0005 -1 4218 4206 1777 2439 2427 9.22 99 - - - 99 - - 0006 +2 4061 4151 4291 228 138 3.34 99 - 99 - - - - 0007 -1 4527 4527 4348 177 177 2.12 97 2 - - 97 - - -3 4586 4550 4428 156 120 -3.87 0 9 - - - 90 0 0008 -2 4630 4618 4406 222 210 -0.85 99 - - - - 99 - 0009 -1 4797 4797 4645 150 150 3.24 99 - - - 99 - - -1 5160 5067 4933 225 132 -7.67 0 - 99 - 0 0 - -2 5236 5215 4916 318 297 -1.02 0 - 99 - - 0 - +3 5277 5346 5480 201 132 -10.69 0 - 99 0 - 0 - +3 5751 5808 5960 207 150 -14.42 0 - 99 0 - 0 - 0010 +2 4697 4721 5968 1269 1245 9.24 99 - 99 - - - - -2 6004 5890 5612 390 276 4.04 0 - 99 - - 0 - 0011 -2 6331 6160 6005 324 153 4.41 99 - - - - 99 - -3 6443 6302 6162 279 138 -4.69 0 - - 99 - 0 0 -3 6584 6572 6444 138 126 -7.61 0 - - 99 - 0 0 -2 6613 6583 6389 222 192 1.72 0 - - 99 - 0 - -3 6773 6770 6585 186 183 -1.71 0 - - 99 - - 0 -3 6962 6902 6774 186 126 -3.87 0 - - 99 - - 0 0012 +3 6018 6027 6980 960 951 11.81 99 - - 99 - - - 0013 +3 6981 7056 7208 225 150 4.32 98 1 - 98 - - - -1 7413 7299 7162 249 135 2.57 0 99 - - 0 - 0 -2 7585 7492 7169 414 321 -9.28 0 99 - - - 0 - -3 7730 7694 7554 174 138 -1.27 0 99 - - - - 0 0014 +1 7048 7171 7812 762 639 11.27 99 99 - - - - - 0015 -3 8036 7961 7809 225 150 1.22 99 - - - - - 99 -1 8082 8031 7840 240 189 -9.25 0 - - - 0 - 99 -3 8285 8258 8058 225 198 -2.47 0 - - 99 - - 0 -2 8464 8449 8327 135 120 -9.69 0 - 0 99 - 0 0 -3 8810 8732 8286 522 444 -0.09 0 - - 99 - - 0 -2 8917 8890 8750 165 138 -3.76 0 - - 99 - 0 - 0016 +3 7860 7872 8945 1083 1071 9.61 99 - - 99 - - - +3 8946 9006 9146 198 138 -8.43 0 - 99 0 - - - -2 9310 9190 9050 258 138 1.89 0 - 99 - - 0 - +3 9162 9189 9314 150 123 -2.06 0 - 99 0 - 0 - -1 9561 9486 9355 204 129 -0.74 0 - 99 - 0 0 - -2 9580 9472 9344 234 126 -0.34 0 - 99 - - 0 - -2 9868 9850 9719 147 129 2.27 0 - 99 - - 0 - 0017 +2 8930 8942 9916 984 972 12.11 99 - 99 - - - - -1 10182 10128 9988 192 138 -3.46 0 - - 99 0 - 0 -2 10681 10657 10511 168 144 -5.38 0 - - 99 - 0 0 -1 10818 10785 10615 201 168 -3.38 0 - - 99 0 - - -3 10838 10793 10659 177 132 2.05 0 - - 99 0 - 0 -2 10903 10891 10727 174 162 -3.89 0 - - 99 - 0 - +1 10942 10945 11091 147 144 -4.20 0 0 - 99 - - - 0018 +3 9978 9990 11147 1167 1155 10.52 99 - - 99 - - - -3 11201 11129 10953 246 174 3.18 0 - - 99 - - 0 -3 11399 11363 11202 195 159 -5.37 0 - 99 - - - 0 -1 11406 11406 11251 153 153 -0.85 0 - 99 - 0 - - -2 11536 11488 11360 174 126 -4.75 0 0 99 - - 0 - -1 11559 11556 11407 150 147 1.38 0 - 99 - 0 - - 0019 +2 11153 11156 11842 687 684 9.86 99 - 99 - - - - 0020 -2 11905 11875 11738 165 135 8.02 99 - - - - 99 - -2 12166 12151 12017 147 132 -4.32 0 - - 99 - 0 - 0021 +3 11775 11826 12236 459 408 8.91 99 - - 99 - - - 0022 -3 12284 12263 12078 204 183 -1.09 99 - - - - - 99 +3 12237 12255 12389 150 132 -3.00 2 - 97 2 - - - 0023 +2 12242 12296 12481 237 183 -1.61 99 - 99 - - - - 0024 -1 12522 12495 12334 186 159 5.69 99 - - - 99 - - 0025 +1 12406 12448 12576 168 126 0.64 99 99 - - - - - 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99 - - - -3 16190 16124 15969 219 153 -1.89 0 - - 99 - - 0 +1 16048 16060 16245 195 183 -8.40 0 0 - 99 - - - -2 16327 16312 16178 147 132 -7.19 0 - - 99 0 0 - -3 16523 16385 16191 330 192 0.83 0 - - 99 - - 0 0034 +3 15735 15765 16529 792 762 11.19 99 - - 99 - - - +2 16589 16604 16753 162 147 -5.20 0 99 0 - - - - -1 17106 17064 16876 228 186 -4.40 0 99 - - 0 - - -3 17165 17141 16944 219 195 -2.27 0 99 - - - - 0 +2 17096 17096 17245 147 147 -0.95 0 99 0 - - - - -1 17370 17358 17155 213 201 3.17 0 99 - - 0 - - -1 17616 17559 17371 243 186 -1.37 0 99 - - 0 - - -3 17717 17564 17436 279 126 -3.82 0 99 - - 0 - 0 -2 18007 17998 17804 201 192 -0.72 0 99 - - - 0 - -1 18138 18111 17974 162 135 -2.79 0 99 - - 0 - 0 -2 18229 18226 18068 159 156 -1.55 0 99 0 - - 0 0 -3 18260 18218 17970 288 246 -6.38 0 99 - - - - 0 +2 18017 18179 18337 318 156 -6.23 0 99 0 - - - - -1 18402 18375 18223 177 150 -2.83 0 99 - - 0 - - 0035 +1 16570 16576 18435 1863 1857 10.30 99 99 - - - - - 0036 -1 18750 18660 18502 246 156 0.50 99 - - - 99 - - 0037 +1 18538 18550 18759 219 207 10.29 99 99 - - - - - +3 18867 18939 19082 213 141 -1.56 0 - - 0 - 99 - +1 19027 19075 19260 231 183 -6.84 0 0 - - - 99 - +3 19083 19104 19283 198 177 0.91 0 - - 0 - 99 - +3 19407 19422 19613 204 189 -0.23 0 - - 0 - 99 - -1 19914 19902 19780 132 120 -4.98 0 - 0 - 0 99 - 0038 +2 19478 19478 20266 786 786 -2.34 0 - 0 - - 99 - 0039 -2 20296 20284 18884 1410 1398 8.81 99 - - - - 99 - 0040 +2 20315 20315 20485 168 168 -0.57 99 - 99 - - - - +1 20749 20911 21048 297 135 -4.72 0 0 - 0 - - 99 0041 -3 21119 21098 20466 651 630 14.52 99 - - - - - 99