Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/NZ_FNVX010000061.1.AOI_02.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/NZ_FNVX010000061.1.AOI_02 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/NZ_FNVX010000061.1.AOI_02.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_FNVX010000061.1.AOI_02 Sequence length = 21128 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 699 672 466 231 204 -0.06 0 - 99 - 0 - - -2 868 844 548 318 294 4.94 0 - 99 - - 0 - -3 1070 1001 849 219 150 -3.10 0 - 99 - - - 0 -3 1223 1220 1071 150 147 -3.03 0 - 99 - - - 0 -2 1303 1303 1178 123 123 0.79 0 - 99 - - 0 - +3 1512 1563 1727 213 162 1.27 0 - 99 0 - - - -3 1757 1748 1602 153 144 -0.26 0 - 99 - - - 0 0001 +2 83 83 2674 2589 2589 10.64 99 - 99 - - - - -2 3100 3070 2930 168 138 4.18 0 - 99 - 0 0 - 0002 +2 2675 2675 3214 537 537 13.12 99 - 99 - - - - -2 3397 3361 3206 189 153 2.92 0 - - 99 - 0 - -3 3407 3401 3267 138 132 -3.62 0 0 - 99 - 0 0 +1 3271 3286 3420 147 132 -10.30 0 0 - 99 - - - -1 3630 3630 3463 165 165 6.77 0 - - 99 0 - 0 -3 3683 3614 3417 264 195 -0.06 0 - - 99 - - 0 0003 +3 3201 3225 3788 585 561 14.54 99 - - 99 - - - -2 4288 4264 4094 192 168 -3.56 0 - - 99 - 0 - -3 4664 4586 4464 198 120 0.98 0 - - 99 - - 0 0004 +3 3789 3858 4721 930 861 8.26 99 - - 99 - - - -1 4725 4713 4495 228 216 -4.12 0 - - 99 0 - - 0005 -2 4735 4729 4571 162 156 3.01 99 - - - 0 99 - 0006 +1 4783 4792 5025 240 231 9.44 99 99 - - - - - 0007 +1 5026 5140 5262 234 120 0.77 99 99 - - - - - -3 5924 5846 5682 240 162 -2.19 0 - - 99 - - 0 -2 6088 5962 5834 252 126 0.29 0 - - 99 - 0 - -2 6271 6211 6089 180 120 -1.81 0 - - 99 - 0 0 +2 6209 6296 6421 210 123 -9.86 0 - 0 99 - 0 - -2 6454 6406 6272 180 132 -1.92 0 - 0 99 - 0 - -3 6560 6530 6390 168 138 -3.23 0 - - 99 - - 0 0008 +3 5460 5493 6575 1113 1080 8.65 99 - - 99 - - - -3 6938 6812 6669 267 141 0.33 0 99 - - - - 0 -1 7386 7368 7213 171 153 -0.82 0 99 - - 0 - - -1 7644 7638 7483 159 153 3.02 0 99 - - 0 - - +2 7490 7532 7663 171 129 -4.39 0 99 0 - - - - -3 7796 7775 7635 159 138 -4.21 0 99 - - - - 0 0009 +1 6571 6589 7839 1266 1248 8.58 99 99 - - - - - 0010 -2 8182 8011 7829 351 180 3.91 99 - - - - 99 - -3 8435 8405 8277 156 126 -8.41 0 - - 99 - - 0 0011 +3 7872 7878 8834 960 954 9.83 99 - - 99 - - - 0012 -2 8878 8845 8684 192 159 -0.48 99 - - - - 99 - +2 8885 8885 9025 138 138 -3.66 3 96 3 - - - - 0013 -3 9053 9020 8892 159 126 0.41 97 2 0 - - - 97 0014 +1 8869 8881 9060 189 177 -0.98 99 99 - - - - - 0015 -1 9291 9288 8911 378 375 5.10 99 - - - 99 - - +1 9454 9454 9582 126 126 -3.08 0 0 - - - 99 - +2 9494 9518 9667 171 147 1.22 0 - 0 - - 99 - +2 9749 9794 9955 204 159 2.81 0 - 0 - - 99 - 0016 -2 10012 9994 9311 699 681 8.92 99 - - - - 99 - +1 10066 10072 10239 171 165 2.74 0 0 - 0 99 - - +3 10017 10020 10271 252 249 4.65 0 - - 0 99 - - +2 10214 10229 10399 183 168 1.40 0 - 0 - 99 - - +1 10261 10327 10497 234 168 -0.38 0 0 - - 99 - - +2 10466 10484 10645 177 159 -1.23 0 - 0 - 99 - - -3 10796 10694 10542 252 150 -6.28 0 0 - - 99 - 0 +1 10537 10696 10899 360 201 4.02 0 0 - - 99 - - 0017 -1 11142 11139 9994 1146 1143 10.26 99 - - - 99 - - 0018 +1 11035 11047 11205 168 156 0.13 99 99 - - - - - +3 11142 11199 11369 225 168 -2.41 0 - - 0 - - 99 +1 11491 11530 11805 312 273 1.31 0 0 - - - - 99 -2 11890 11887 11738 150 147 -4.85 0 - - 0 - 0 99 0019 -3 12122 12110 11136 984 972 10.72 99 - - - - - 99 0020 +3 11709 11862 12134 423 270 0.14 99 - - 99 - - - +2 12116 12212 12532 414 318 -0.20 0 - 0 - - 99 - +3 12459 12597 12728 267 129 -5.00 0 - - 0 - 99 - 0021 -2 13177 13177 12107 1068 1068 9.51 99 - - - - 99 - 0022 +1 12925 13180 13302 375 120 0.04 99 99 - - - - - +3 13206 13248 13373 165 123 -5.86 0 - - 0 - 99 - +2 13451 13472 13651 198 177 -4.89 0 - 0 - - 99 - 0023 -2 13885 13858 13211 672 645 10.53 99 - - - - 99 - +2 13970 14054 14185 213 129 -3.01 0 - 0 - 99 - - 0024 -1 14220 14199 14041 177 156 3.42 99 - - - 99 - - 0025 +1 14131 14152 14283 150 129 2.81 99 99 - - - - - -1 14577 14565 14443 132 120 2.62 0 99 - - 0 - - -3 14804 14804 14652 150 150 3.58 0 99 - - - - 0 +2 14732 14789 14920 186 129 -8.26 0 99 0 - - - - 0026 +1 14371 14401 14967 594 564 10.88 99 99 - - - - - -3 15269 15227 15060 207 165 -5.78 0 99 - - - - 0 -3 15662 15632 15510 150 120 -1.25 0 99 0 - 0 - 0 +2 15455 15551 15685 228 132 -1.35 0 99 0 - 0 - - -1 15711 15708 15415 294 291 0.84 0 99 - - 0 - - -3 15857 15851 15663 192 186 -0.41 0 99 - - - - 0 0027 +1 15040 15055 16044 1002 987 7.57 99 99 - - - - - 0028 +2 15872 15911 16072 198 159 1.46 99 - 99 - - - - 0029 -3 16178 16160 16035 141 123 2.60 99 - - - - - 99 -3 16379 16334 16179 198 153 -0.48 0 99 - - - - 0 -2 16408 16402 16238 168 162 -10.44 0 99 - - - 0 - +3 16338 16356 16571 231 213 -2.17 0 99 - 0 - - - -3 16691 16685 16563 126 120 -2.22 0 99 - - 0 - 0 0030 +1 16123 16150 16848 723 696 9.34 99 99 - - - - - -1 16854 16695 16516 336 177 3.50 0 99 - - 0 - - -2 17197 17089 16859 336 228 -1.96 0 - 99 - - 0 - 0031 +2 16772 16790 17203 429 411 6.52 99 - 99 - - - - 0032 -1 17328 17232 17083 243 147 0.06 99 - - - 99 - - -2 17590 17587 17444 144 141 -7.20 0 99 - - - 0 - +3 17475 17490 17618 141 126 -6.17 0 99 - 0 - - - -3 17801 17681 17556 243 123 -4.79 0 99 - - - - 0 0033 +1 17182 17200 17964 780 762 6.72 99 99 - - - - - 0034 -1 18261 18249 18121 138 126 0.30 99 - - - 99 - - +3 18222 18396 18641 417 243 0.72 0 0 - 0 - - 99 +1 18400 18502 18699 297 195 2.57 0 0 - - - - 99 -2 18706 18631 18509 195 120 -6.33 0 0 - 0 - 0 99 +3 18642 18690 19019 375 327 2.01 0 - - 0 - - 99 -2 19300 19240 19106 192 132 -3.33 0 - - - - 0 99 +3 19191 19290 19421 228 129 -1.96 0 0 - 0 - - 99 +1 19273 19339 19503 228 162 3.85 0 0 - - - - 99 0035 -3 19757 19685 18285 1470 1398 12.83 99 - - - - - 99 0036 -3 19967 19946 19824 141 120 8.52 88 11 - - - - 88 0037 +1 19792 19870 20040 246 168 1.47 99 99 - - - - - 0038 +2 19943 19946 20071 126 123 2.45 99 - 99 - - - - 0039 +3 19974 19986 20126 150 138 1.94 99 - - 99 - - - -2 20272 20272 20144 126 126 0.60 0 - - 99 - 0 - +2 20165 20189 20332 165 141 -5.07 0 - 0 99 - - - -2 20683 20674 20546 135 126 1.62 0 - - 99 - 0 - -1 20898 20844 20674 222 168 -7.18 0 - - 99 0 - - -1 21033 21033 20905 126 126 -3.70 0 - 0 99 0 - -