Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/NZ_FNVX010000061.1.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/NZ_FNVX010000061.1.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/NZ_FNVX010000061.1.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_ihuae.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_FNVX010000061.1.AOI_01 Sequence length = 21041 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -3 653 548 414 237 132 -4.22 0 99 - - - - 0 -3 950 890 747 201 141 -2.57 0 99 - - - - 0 0001 +1 259 301 1074 813 771 12.15 99 99 - - - - - 0002 -3 1109 1109 951 156 156 9.49 99 - - - - - 99 -3 1283 1247 1110 171 135 -2.12 0 99 - - - - 0 0003 +1 1102 1135 1644 540 507 12.26 99 99 - - - - - -3 1721 1607 1458 261 147 -1.65 0 99 - - - - 0 0004 -2 1750 1750 1604 144 144 2.61 99 - - - - 99 - -1 1779 1764 1639 138 123 0.82 0 - 99 - 0 - - -3 2075 2048 1902 171 144 0.65 0 - 99 - - - 0 0005 +2 1628 1634 2143 513 507 13.15 99 - 99 - - - - -3 2384 2381 2199 183 180 4.82 0 99 - - - - 0 0006 +1 2128 2140 2613 483 471 14.00 99 99 - - - - - 0007 -3 2675 2645 2388 285 255 8.68 99 - - - - - 99 0008 -1 2895 2811 2623 270 186 9.95 99 - - - 99 - - 0009 +3 2823 2835 2981 156 144 10.35 99 - - 99 - - - +3 3033 3099 3275 240 174 -1.18 0 - - 0 - 99 - +3 3360 3414 3542 180 126 2.21 0 - - 0 - 99 - 0010 -2 3712 3712 2927 783 783 10.02 99 - - - - 99 - 0011 +3 3564 3693 3821 255 126 4.34 99 - - 99 - - - -2 3883 3850 3728 153 120 0.60 0 - - - - 0 99 +1 3859 3961 4104 243 141 -1.09 0 0 - - - - 99 +3 3978 4167 4382 402 213 0.53 0 - - 0 - - 99 0012 -3 4472 4457 3717 753 738 11.75 99 - - - - - 99 0013 -3 4733 4694 4572 159 120 2.88 99 - - - - - 99 0014 -1 4752 4719 4591 159 126 0.64 40 - - - 40 - 59 +3 4710 4725 4862 150 135 3.47 0 - 99 0 - - - -1 5055 5040 4918 135 120 2.77 0 - 99 - 0 - - 0015 +2 4625 4637 5335 708 696 8.84 99 - 99 - - - - 0016 +3 5277 5280 5408 129 126 3.67 99 - - 99 - - - +1 5323 5359 5601 276 240 -0.93 0 0 - - - - 99 0017 -3 5807 5738 5337 468 399 11.97 99 - - - - - 99 +2 5972 6023 6175 201 150 0.11 0 - 0 - 99 - - +3 6069 6087 6209 138 120 -1.30 0 - - 0 99 - 0 -3 6242 6200 6075 165 123 2.44 0 - - 0 99 - 0 0018 -1 6306 6294 5761 543 531 9.98 99 - - - 99 - - 0019 +1 6247 6304 6435 186 129 10.27 99 99 - - - - - +2 6740 6749 6874 132 123 -0.40 0 - 0 0 - 99 - +2 6875 6914 7054 177 138 1.35 0 - 0 - - 99 - 0020 -2 7054 7045 6428 624 615 12.12 99 - - - - 99 - 0021 -2 7267 7237 7082 183 153 2.05 99 - - - - 99 - -3 7346 7271 7086 258 183 0.43 0 - - - - 99 0 -1 7530 7506 7315 213 189 -0.04 0 - 99 - 0 - - -3 7571 7526 7380 189 144 -6.79 0 - 99 - 0 - 0 0022 +2 7145 7157 7780 633 621 8.89 99 - 99 - - - - 0023 -1 7821 7821 7576 243 243 -1.51 99 - - - 99 - - 0024 +1 7765 7777 7902 135 123 0.27 99 99 - - - - - +2 7787 7799 8017 228 216 -3.60 0 - 0 - - 99 - -1 8199 8160 8038 159 120 -2.37 0 - 0 - 0 99 - +2 8042 8147 8281 237 132 1.25 0 - 0 - - 99 - +2 8393 8393 8542 147 147 -1.66 0 - 0 - - 99 - +3 8472 8481 8612 138 129 -0.29 0 - - 0 - 99 - +2 8711 8777 8968 255 189 -0.69 0 - 0 - - 99 - +3 8946 8988 9221 273 231 -0.41 0 - - 0 - 99 - 0025 -2 9622 9613 7781 1839 1830 10.40 99 - - - - 99 - 0026 -3 9794 9761 9636 156 123 2.10 99 - - - - - 99 0027 +3 9693 9717 9893 198 174 2.45 75 - - 75 - 24 - 0028 -2 9901 9841 9680 219 159 4.47 99 - - - - 99 - -2 10135 10111 9989 144 120 -0.24 0 - - 99 - 0 - -1 10920 10896 10774 144 120 1.67 0 - - 99 0 - - -1 11280 11268 11029 249 237 -0.13 0 - - 99 0 - - 0029 +3 9969 9999 11462 1491 1461 11.67 99 - - 99 - - - 0030 -3 11537 11501 11334 201 165 0.55 99 - - - - - 99 0031 -1 11571 11556 11428 141 126 2.52 99 - - - 99 - - +2 11870 11876 12010 138 132 4.87 0 - 0 - - - 99 +2 12146 12170 12337 189 165 1.48 0 - 0 - - - 99 +1 12577 12583 12714 135 129 8.06 0 0 - - - - 99 0032 -3 12806 12791 11610 1194 1179 12.63 99 - - - - - 99 +1 12736 12823 12969 231 144 2.74 0 0 - - - 99 - 0033 -2 13483 13468 12788 693 678 9.25 99 - - - - 99 - 0034 +3 13323 13323 13553 228 228 4.97 99 - - 99 - - - -2 13906 13900 13760 144 138 -0.09 0 - - 98 - 0 1 +1 13771 13789 14040 267 249 -1.30 0 0 - 0 - - 99 +3 13752 13812 14126 372 312 3.25 0 - - 0 - - 99 0035 +2 14081 14126 14311 228 183 2.89 89 - 89 - - - 10 +3 14136 14163 14339 201 174 3.59 0 - - 0 - - 99 0036 -3 14435 14348 13458 975 888 6.36 99 - - - - - 99 +1 14293 14329 14496 201 165 -3.74 0 0 - - 99 - - +3 14355 14406 14576 219 168 -4.23 0 - - 0 99 - - 0037 -1 14970 14895 14314 654 579 5.48 99 - - - 99 - - 0038 +2 14822 14894 15028 204 132 1.03 99 - 99 - - - - -2 15118 15109 14981 135 126 -3.81 0 - - 15 - 0 84 +3 14985 15051 15194 207 141 -1.52 0 - - 0 - - 99 -2 15343 15295 15143 198 150 -1.93 0 - - - - 0 99 0039 -3 15629 15629 14898 729 729 6.27 99 - - - - - 99 0040 +1 15175 15301 15690 513 387 5.15 99 99 - - - - - -1 15690 15666 15502 186 162 5.68 3 96 - - 3 - - +2 16082 16163 16468 384 303 5.53 0 - 0 - 99 - - 0041 -1 17091 17058 15946 1143 1110 12.89 99 - - - 99 - - 0042 +3 17361 17361 17564 201 201 5.36 26 - - 26 - - 73 0043 -2 17626 17623 17489 135 132 4.10 37 - - - - 37 62 +2 17615 17648 17908 291 258 2.64 0 - 0 - - - 99 0044 -3 18146 18146 17100 1044 1044 7.98 99 - - - - - 99 +2 18131 18164 18292 159 126 3.45 0 - 0 0 - 98 - +3 18168 18168 18362 192 192 4.76 2 - - 2 - 97 - 0045 -2 19210 19204 18098 1110 1104 8.11 99 - - - - 99 - 0046 +2 19028 19046 19237 207 189 1.09 99 - 99 - - - - 0047 -2 19651 19459 19211 438 246 10.87 99 - - - - 99 - -3 19751 19733 19608 141 123 -6.71 11 88 - - - - 11 0048 +2 19664 19664 19831 165 165 4.49 99 - 99 - - - - 0049 +1 19786 19789 19917 129 126 1.85 99 99 - - - - - 0050 -3 20039 19976 19800 237 174 1.61 99 - - - - - 99 -1 20160 20115 19960 198 153 -4.17 0 - 99 - 0 - - +3 20100 20148 20288 186 138 1.91 0 - 86 0 - 13 - -2 20446 20431 20006 438 423 4.25 0 - 99 - - 0 - +1 20275 20359 20487 210 126 -5.86 0 0 99 - - - - -1 20520 20493 20371 147 120 2.57 0 - 99 - 0 - - -2 21040 21040 20447 591 591 1.68 0 - 99 - - 0 -