Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_heparinolyticus.result/NZ_RQYF010000031.72.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_heparinolyticus.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_heparinolyticus.result/NZ_RQYF010000031.72.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_heparinolyticus.result/NZ_RQYF010000031.72.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_heparinolyticus.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_RQYF010000031.72.AOI_01 Sequence length = 21140 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 0001 +3 15 240 377 360 135 3.44 99 - - 99 - - - 0002 -3 653 647 411 240 234 -6.41 99 - - - - - 99 -1 825 792 625 198 165 -20.35 0 - - 99 0 0 - +2 710 752 940 228 186 -6.56 0 - 0 99 - 0 0 -2 1057 661 521 534 138 -4.00 0 - 0 99 - 0 - -1 1230 1143 979 249 162 -24.55 0 - 0 99 0 - 0 0003 +3 525 537 1310 783 771 10.42 99 - - 99 - - - -3 1316 956 654 660 300 0.38 0 - - 99 - 0 0 0004 -2 1342 1324 1112 228 210 2.63 99 - 0 - - 99 - 0005 +2 941 1214 1348 405 132 -4.61 99 - 99 - - - - -2 1810 1738 1616 192 120 -9.61 0 51 - - 48 0 - -1 1902 1800 1582 318 216 2.27 0 99 - - 0 - - +2 1943 1952 2080 135 126 -5.49 0 99 0 0 0 - - -1 2169 2133 1903 264 228 3.67 0 99 - - 0 - - -3 2183 2180 2034 147 144 -5.05 0 99 - 0 - - 0 +3 1956 1995 2243 285 246 -13.48 0 99 - 0 - - - -2 2257 2173 2042 213 129 -17.37 0 99 - 0 0 0 0 -3 2339 2324 2187 150 135 -7.16 0 99 - - - - 0 +3 2304 2385 2543 237 156 -14.28 0 99 - 0 0 - - -2 2557 2554 2411 144 141 -25.15 0 99 - - 0 0 - -1 2658 2541 2227 429 312 0.62 0 99 - - 0 - - -3 2762 2594 2472 288 120 -2.99 0 99 - - 0 - 0 0006 +1 1357 1369 3168 1809 1797 12.09 99 99 - - - - - -1 3171 2832 2704 465 126 1.69 0 99 - - 0 - - -3 3206 3077 2934 270 141 0.35 0 99 - 0 0 - 0 -1 3420 3399 3241 177 156 -5.08 0 - 99 - 0 0 - +3 3312 3324 3446 132 120 -10.63 0 - 99 0 - 0 - +3 3486 3489 3674 186 183 -14.89 0 - 99 0 - 0 - -2 3697 3082 2960 735 120 -23.70 0 99 - 0 0 0 0 0007 +2 3230 3248 3802 570 552 15.85 99 - 99 - - - - 0008 -1 3828 3810 3640 186 168 -1.41 99 0 - - 99 - - 0009 -2 3865 3820 3698 165 120 -0.89 13 0 - - 86 13 - -1 4086 4080 3958 126 120 -9.73 0 0 99 - 0 0 - +3 3972 3972 4109 135 135 -9.16 0 0 99 0 - 0 - -1 4386 4365 4237 147 126 0.38 0 0 99 - 0 0 - +1 3841 4243 4488 645 243 -9.87 0 0 99 - - 0 - -1 4515 4515 4387 126 126 1.72 0 - 99 - 0 0 - -2 4522 4324 3923 597 399 1.78 0 0 99 - - 0 - -1 4662 4656 4516 144 138 -2.27 0 0 99 - 0 - - +3 4641 4659 4880 237 219 -16.67 0 - 99 0 - 0 - -1 5085 4983 4843 240 138 -2.35 0 - 99 - 0 0 - -1 5418 5355 5218 198 135 -3.52 0 0 99 - 0 0 - +1 5002 5278 5424 420 144 -8.61 0 0 99 - - 0 - 0010 +2 3851 3863 5530 1677 1665 8.83 99 - 99 - - - - 0011 -2 5647 5617 4523 1122 1092 -2.73 0 0 99 - - 0 - +1 5512 5644 5772 258 126 -10.26 0 0 0 99 - - 0 -3 5879 5870 5619 258 249 -0.20 0 - - 99 - - 0 +1 5884 5926 6060 174 132 -11.23 0 0 - 99 - - 0 -3 6263 6158 5880 381 276 -4.07 0 - - 99 - - 0 -2 6307 6238 6098 207 138 1.64 4 - - 95 - 4 0 +2 6254 6332 6472 216 138 -10.73 0 - 0 99 0 - 0 +1 6352 6442 6576 222 132 -14.00 0 0 - 99 - 0 0 0012 +3 5412 5508 6791 1377 1281 5.40 99 - - 99 - - - -3 6812 6725 6264 546 459 -0.83 0 - - 99 - - 0 -1 6927 6888 6763 162 123 -13.17 0 - - - 0 99 - 0013 -2 7048 6895 6755 291 138 -3.25 99 - - - - 99 - 0014 -3 7106 7061 6813 291 246 -3.44 99 - - - - - 99 0015 +2 6989 6998 7141 150 141 -2.13 99 - 99 - - - - 0016 +3 7011 7032 7172 159 138 -4.38 99 - - 99 - - - +1 7207 7267 7446 237 177 -13.12 0 0 99 - - 0 - -3 7529 7466 7278 249 186 -19.80 0 - 99 - - 0 0 0017 -2 7840 7351 7154 684 195 3.85 99 - - - - 99 - +1 7447 7678 7851 402 171 -10.62 0 0 99 - 0 - 0 0018 +2 7220 7223 7879 657 654 11.06 99 - 99 - - - - -1 8010 7701 7534 474 165 2.15 0 0 99 - 0 0 - -1 8166 8145 8011 153 132 -7.13 0 - 99 - 0 0 0 -3 8192 7892 7638 552 252 -13.29 0 - - - 99 - 0 -3 8684 8534 8349 333 183 -24.13 0 - 99 - - 0 0 +1 8392 8539 8709 315 168 -17.78 0 0 99 - - 0 - 0019 -2 8884 8047 7841 1041 204 -2.47 99 - - - - 99 0 +1 8842 8842 8967 123 123 -13.99 0 0 99 - 0 - - -1 8976 8949 8809 165 138 -1.98 0 - 99 - 0 - - 0020 +2 7880 7907 9004 1122 1095 12.53 99 - 99 - - - - +2 9026 9032 9178 150 144 -9.14 0 99 0 0 0 - - 0021 -1 9399 9249 8977 420 270 1.63 99 - - - 99 - - -3 9620 9512 9342 276 168 1.21 0 99 - - - - 0 -3 9824 9815 9690 132 123 -9.90 0 99 - - 0 - 0 0022 +1 8989 9001 9975 984 972 13.31 99 99 - - - - - -1 10104 9807 9400 702 405 -0.71 0 99 - - 0 - - +2 10076 10076 10216 138 138 -7.01 0 99 0 0 - - - -3 10676 10634 10497 177 135 -3.35 0 99 - - 0 - 0 -3 10928 10928 10797 129 129 -1.05 0 99 - - 0 - 0 +3 10803 10848 10973 168 123 -7.95 0 99 - 0 0 0 - -2 10987 10960 10835 150 123 -24.01 0 99 - 0 0 0 - -1 11100 10821 10477 621 342 -2.87 0 99 - - 0 - - 0023 +1 9988 10000 11154 1164 1152 12.30 99 99 - - - - - -3 11450 11351 11130 318 219 -13.78 0 - 99 - - - 0 -1 11547 11520 11395 150 123 -7.89 0 - 99 - 0 0 - -2 11800 11734 11372 426 360 1.69 0 - 99 - - 0 - 0024 +2 11126 11159 11842 714 681 7.51 99 - 99 - - - - +2 11843 11900 12097 252 195 -6.66 0 - 0 99 - - 0 -3 12107 12089 11859 246 228 2.32 0 - 0 99 - - 0 -2 12175 12055 11903 270 150 -1.38 0 - 0 99 - 0 0 0025 +3 11805 11850 12236 429 384 5.84 99 - - 99 - - - +1 12406 12436 12588 180 150 -13.53 0 0 94 5 - - - +3 12237 12510 12665 426 153 -7.81 0 - 99 0 - - - -3 13400 13250 13125 273 123 -12.31 0 - 0 - - 99 0 0026 +2 12359 12428 13498 1137 1068 -3.10 0 - 0 - - 99 - +3 13167 13260 13505 336 243 0.96 0 - - 0 - 99 - 0027 -2 13738 13453 12518 1218 933 8.00 99 - 0 - - 99 - -3 13922 13823 13671 249 150 -11.32 0 0 - - 99 - 0 +2 13904 13913 14059 153 144 -8.63 0 24 0 - 75 - - -3 14135 14135 13974 159 159 -5.29 0 7 - - 92 - 0 -2 14311 14302 14144 165 156 -16.14 0 0 - - 99 0 - +3 14202 14202 14375 171 171 -14.84 0 0 - 0 99 - - 0028 +1 13612 13696 14658 1044 960 -0.06 0 0 - - 99 - - +2 14396 14615 14779 381 162 -5.51 0 - 0 - 99 - - 0029 -1 14865 14715 13495 1368 1218 5.65 99 - - - 99 - - -1 15114 15105 14974 138 129 -11.54 0 - 0 0 0 99 - +2 14780 14834 15118 336 282 -2.11 0 - 0 0 - 99 - +3 14790 15135 15269 477 132 -2.00 0 - 0 0 - 99 - +3 15342 15348 15524 180 174 0.64 0 - 0 0 - 99 - +2 15119 15287 15595 474 306 0.22 0 - 0 - - 99 - +2 15596 15680 15925 327 243 -2.84 0 - 0 0 - 99 - 0030 +3 15606 15822 15959 351 135 -5.64 79 - - 79 - 20 - 0031 -2 15967 15865 14765 1200 1098 5.53 99 - - - - 99 - +1 15913 15949 16104 189 153 -5.19 0 0 - - - - 99 0032 -3 16106 16094 15855 249 237 6.70 99 - - - - - 99 0033 -1 16290 16203 16078 210 123 -8.65 99 - - - 99 - - -3 16460 16418 16287 171 129 -9.64 0 - - - - 99 0 +3 16644 16653 16841 195 186 0.24 0 - 0 0 - 99 - -1 16932 16875 16732 198 141 -14.03 0 - 6 - 0 93 - +2 16538 16640 16936 396 294 -4.00 0 - 0 - - 99 - 0034 -2 17017 17008 16169 846 837 6.01 99 - - - - 99 - 0035 +3 16902 16929 17072 168 141 0.65 99 - - 99 - - - 0036 -3 17141 17090 16962 177 126 -0.65 99 - - - - - 99 +3 17283 17292 17447 162 153 -10.92 0 0 - 0 99 - - +1 17056 17299 17607 549 306 1.95 0 0 - - 99 - - 0037 -1 17637 17595 17119 516 474 10.57 99 0 - - 99 - - 0038 +2 17552 17570 17698 144 126 -4.51 99 - 99 - - - - +3 17835 17862 17987 150 123 -2.78 0 0 0 0 - 99 - 0039 -2 18208 18196 17681 525 513 11.15 99 - - - - 99 - +3 18213 18264 18494 279 228 0.15 0 - - 0 - - 99 +2 18404 18629 18757 351 126 -19.57 0 - 0 - 0 - 99 -1 18765 18765 18613 150 150 -12.08 0 - - - 0 - 99 -2 19363 19297 19079 282 216 -10.29 0 - - 0 - 0 99 0040 +3 18720 18768 19961 1239 1191 -1.45 0 - - 0 - - 99 +1 19849 19852 19995 144 141 -3.60 0 0 - - - - 99 +3 19962 20118 20594 630 474 1.44 0 - - 0 - - 99 0041 -3 20879 20879 18240 2637 2637 11.25 99 - - - - - 99 0042 -2 21085 21037 20891 192 144 -2.37 99 - - - - 99 - 0043 -3 21140 21107 20907 231 198 6.61 99 - - - - - 99