Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_graminisolvens.result/NZ_ATZI010000011.0.AOI_01.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_graminisolvens.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_graminisolvens.result/NZ_ATZI010000011.0.AOI_01 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_graminisolvens.result/NZ_ATZI010000011.0.AOI_01.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_graminisolvens.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_ATZI010000011.0.AOI_01 Sequence length = 21134 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 471 438 262 207 174 -3.69 0 99 - - 0 - - -3 617 428 303 312 123 -1.05 0 99 - - 0 - 0 +2 485 539 721 234 180 -0.94 0 99 0 - - - - -3 794 791 663 129 126 -4.37 0 99 - - - - 0 +3 747 774 1022 273 246 -4.46 0 99 - 0 - - - -3 1034 998 795 237 201 2.34 0 99 - 0 - - 0 -1 1257 1212 1039 216 171 -0.97 0 99 - - 0 - - -3 1373 1334 1209 162 123 -1.59 0 99 - - - - 0 -3 1985 1844 1641 342 201 -6.39 0 99 - - 0 - 0 -1 2019 1746 1507 510 237 -0.33 0 99 - - 0 - - -3 2480 2384 2256 222 126 0.70 0 99 - - 0 - 0 +3 2355 2412 2555 198 141 -2.91 0 99 - 0 - - - 0001 +1 1 55 2613 2610 2556 8.91 99 99 - - - - - 0002 +2 2444 2513 2635 189 120 0.85 99 - 99 - - - - 0003 -3 2729 2705 2571 156 132 -0.49 99 - - - - - 99 -3 3221 3152 3012 207 138 -2.13 0 99 - - - - 0 0004 +1 2614 2629 3333 717 702 10.34 99 99 - - - - - -2 3634 3586 3431 201 153 -5.91 0 - - 99 - 0 - -2 3787 3784 3647 138 135 5.73 0 - - 99 0 0 - -1 3801 3777 3607 192 168 -2.52 0 - - 99 0 - - -2 3958 3949 3824 132 123 -4.06 0 - - 99 - 0 - -3 4070 4007 3834 234 171 1.94 0 - - 99 - - 0 -2 4165 4156 4004 159 150 0.11 0 - - 99 - 0 - -2 4426 4396 4262 162 132 -3.86 0 - - 99 - 0 - 0005 +3 3297 3321 4601 1302 1278 9.44 99 - - 99 - - - +2 4637 4640 4783 144 141 -2.32 0 - 0 99 - - - 0006 -2 4960 4960 4829 129 129 0.17 14 - - 85 - 14 - 0007 +3 4644 4647 4994 348 345 1.82 99 - - 99 - - - 0008 -2 5158 5140 4982 174 156 2.02 99 - - - - 99 - -1 5268 5247 5110 156 135 -3.58 0 - - 99 0 - - -2 5596 5575 5381 213 192 -5.34 0 - - 99 - 0 0 +1 5407 5446 5610 201 162 -14.23 0 0 - 99 - - 0 -2 5953 5845 5675 276 168 2.92 0 - - 99 - 0 - -2 6226 6205 6050 174 153 -7.48 0 - - 99 - 0 0 -3 6269 6011 5871 396 138 -4.37 0 - - 99 0 - 0 -1 6345 6339 6202 141 135 -8.26 0 - - 99 0 - - -2 6652 6622 6464 186 156 -2.48 0 - - 99 - 0 0 0009 +3 5043 5076 6749 1704 1671 9.23 99 - - 99 - - - 0010 +1 6652 6655 6795 141 138 2.04 37 37 - - - - 62 -3 6797 6515 6387 408 126 -4.04 0 - - 99 - - 0 0011 +1 6796 6829 7158 360 327 8.80 99 99 - - - - - 0012 +2 7028 7052 7231 201 177 2.38 99 - 99 - - - - 0013 -2 7384 7327 7187 195 138 6.92 99 - - - - 99 - -1 7683 7665 7495 186 168 -7.57 0 - - 99 0 - 0 0014 -3 7787 7397 7224 561 171 2.11 99 - - - - - 99 -2 7921 7804 7652 267 150 -3.48 0 - - 99 - 0 - 0015 +3 7260 7269 7925 663 654 10.63 99 - - 99 - - - 0016 -3 8105 7934 7788 315 144 -8.38 99 - - - - - 99 +3 8478 8490 8657 177 165 -9.85 0 - 99 0 0 0 - -1 8676 8541 8404 270 135 -4.33 0 - 99 - 0 0 - 0017 -2 9016 8926 7967 1047 957 -3.07 0 - 99 - - 0 - 0018 +2 7916 7952 9025 1107 1071 10.26 99 - 99 - - - - -3 9254 9224 9099 153 123 -7.86 0 99 - - 0 - 0 0019 -1 9294 9270 8998 294 270 -1.26 99 - - - 99 - - +2 9242 9281 9430 186 147 -4.99 0 99 0 0 - - - -3 9455 9437 9303 150 132 1.14 2 97 - 0 - - 2 -1 9480 9444 9316 162 126 -1.93 0 96 - 0 0 - 2 +3 9285 9333 9497 210 162 -1.73 0 99 - 0 - - - -1 9990 9867 9655 333 210 -2.91 0 99 - - 0 - - 0020 +1 9013 9022 9996 981 972 11.50 99 99 - - - - - 0021 -3 10190 10031 9846 342 183 -4.75 99 - - - - - 99 +1 10066 10066 10209 141 141 -10.16 0 0 - 99 - - - +1 10210 10216 10347 135 129 -12.11 0 0 - 99 - - 0 +2 10259 10391 10582 321 189 -6.55 0 - 0 99 - - - -2 10687 10648 10496 189 150 -4.63 0 - - 99 - 0 0 -3 10742 10577 10422 318 153 -10.19 0 - 0 99 - - 0 -1 11049 11013 10825 222 186 -3.68 0 - - 99 0 - - +1 10897 10951 11094 195 141 -3.76 0 0 - 99 - - - 0022 +3 9990 9993 11141 1149 1146 11.13 99 - - 99 - - - -1 11373 11373 11230 141 141 -0.30 0 - 99 - 0 - - -3 11471 11447 11277 192 168 -10.87 0 - 99 - - - 0 -2 11719 11584 11444 273 138 -3.48 0 - 99 - - 0 - 0023 +2 11120 11138 11818 696 678 9.28 99 - 99 - - - - -2 12049 12031 11909 138 120 -3.78 0 - - 99 - 0 0 0024 +3 11781 11865 12224 441 357 6.53 99 - - 99 - - 0 -3 12287 12008 11850 435 156 -1.34 0 - - 99 - - 0 +1 12418 12421 12681 261 258 -3.10 0 0 - - 99 - - +1 12682 12841 13086 402 243 -1.16 0 0 - - 99 - - 0025 -1 13284 13245 12283 999 960 9.84 99 - - - 99 - - 0026 +2 12935 13028 13309 372 279 1.17 99 - 99 - - - - +3 13230 13338 13463 231 123 0.25 0 - - 0 - 0 99 -2 13552 13390 13268 282 120 -2.65 0 - - 0 - 0 99 +3 13464 13494 13616 150 120 -1.80 0 0 - 0 - - 99 +1 13387 13405 13629 240 222 1.33 0 0 - - - - 99 -2 13765 13756 13610 153 144 -12.01 0 - - - - 0 99 +3 13713 14016 14258 543 240 -2.50 0 - - 0 - - 99 -2 14446 14443 14315 129 126 -5.37 0 0 - - - 0 99 0027 -3 14522 14513 13260 1260 1251 4.17 99 - - - - - 99 +1 14161 14380 14526 363 144 1.25 0 0 - - - - 99 +2 14555 14609 14749 192 138 -1.03 0 0 0 - 99 - - -2 14935 14809 14678 255 129 -14.16 0 0 - - 99 0 - +1 14587 14872 14997 408 123 1.67 0 0 0 - 99 - - +2 14876 14885 15010 132 123 -1.64 0 - 0 - 99 - - +1 15343 15370 15498 153 126 -5.99 0 0 0 - 99 - - +2 15353 15419 15604 249 183 -3.63 0 - 0 - 99 - - 0028 -1 15642 15612 14530 1110 1080 9.51 99 - - - 99 - - 0029 -1 15882 15879 15697 183 180 3.30 97 - - - 97 2 - 0030 -2 15928 15886 15581 345 303 0.11 99 - - - - 99 - +3 15831 15909 16043 210 132 -4.79 0 - 99 0 - - - -2 16258 16234 16109 147 123 -4.81 0 - 99 0 - 0 - -3 16280 16262 16134 144 126 -7.58 0 - 99 0 - 0 0 +3 16107 16155 16286 177 129 -14.42 0 - 99 0 - - - +3 16662 16662 16796 132 132 -6.20 0 - 99 0 - 0 - -2 16906 16543 16289 615 252 -3.02 0 - 99 - - 0 - 0031 +2 15779 15782 16921 1140 1137 10.05 99 - 99 - - - - -2 17128 17101 16967 159 132 -9.05 0 - - - 99 0 - 0032 -1 17205 17151 16918 285 231 7.36 99 - - - 99 - - +2 17015 17030 17209 192 177 0.56 0 - 0 - 99 - - +1 17236 17317 17457 219 138 0.57 0 0 - - 99 - - +2 17501 17531 17656 153 123 -2.67 0 0 0 - 99 - - +2 17780 17798 17926 144 126 -0.93 0 - 0 - 99 - - +1 17848 17881 18003 153 120 -0.08 0 0 - - 99 - 0 0033 -1 18150 18069 17224 924 843 7.87 99 - - - 99 - - +2 18014 18320 18526 510 204 2.77 0 - 0 - - 99 - -1 18594 18516 18376 216 138 -3.25 0 - 0 - 0 99 - 0034 -2 18676 18661 18146 528 513 13.02 99 - - - - 99 - +2 18869 18869 18991 120 120 3.07 0 0 0 - 99 - - +1 18733 18838 19002 267 162 -2.33 0 0 - - 99 - - +3 18900 18942 19088 186 144 -3.18 0 - - 0 99 - - +2 19103 19106 19249 144 141 4.20 0 - 0 - 99 - - 0035 -1 19260 19257 18715 543 540 11.42 99 - - - 99 - - +2 19295 19310 19477 180 165 -2.66 0 - 0 - 99 - - +3 19434 19530 19685 249 153 -8.11 0 - - 0 99 - - -2 19789 19780 19637 150 141 -4.69 0 - - - 99 0 - +3 19749 19758 19883 132 123 2.75 0 - - 0 99 - - -3 20363 20345 20205 156 138 -2.93 0 - - - 99 - 0 +1 20524 20569 20817 291 246 -1.43 0 0 - - 99 - - 0036 -1 21132 21117 19261 1869 1854 9.73 99 - - - 99 - -