Command: /data/pg-molgen/software/bagel4/tools/glimmer3.02/bin/glimmer3 -C 51.5 -o 12 -g 120 -t 12 -r -l /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000061.8188.AOI_02.fna /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000061.8188.AOI_02 Sequence file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/NZ_WCIE010000061.8188.AOI_02.fna Number of sequences = 1 ICM model file = /data/pg-molgen/USERS/Vicky/Results_BAGEL4_Peregrine/Results_Bacteroidaceae//Bacteroides_fragilis.result/GLIMMER.icm Excluded regions file = none List of orfs file = none Input is NOT separate orfs Independent (non-coding) scores are NOT used Circular genome = false Truncated orfs = false Minimum gene length = 120 bp Maximum overlap bases = 12 Threshold score = 12 Use first start codon = false Start codons = atg,gtg,ttg Start probs = 0.600,0.300,0.100 Stop codons = taa,tag,tga GC percentage = 51.5% >NZ_WCIE010000061.8188.AOI_02 Sequence length = 21005 ----- Start ----- --- Length ---- ----------- Scores ------------ ID Frame of Orf of Gene Stop of Orf of Gene Raw InFrm F1 F2 F3 R1 R2 R3 -1 306 237 49 255 186 1.76 0 99 - 0 0 - - 0001 +1 1 40 420 417 378 4.03 99 99 - - - - - -3 425 401 261 162 138 -2.99 0 99 - 0 - - 0 0002 -1 441 429 307 132 120 -1.47 28 - 0 - 28 - 71 +2 311 320 445 132 123 -4.78 0 - 0 - 99 - - 0003 -2 553 550 407 144 141 -2.28 61 - - 38 - 61 - +1 637 661 792 153 129 3.47 0 0 - 0 - - 99 -2 955 811 689 264 120 -0.37 0 - - 0 - 0 99 -1 1161 1104 910 249 192 -2.88 0 - - 0 0 - 99 +1 1156 1174 1353 195 177 1.06 0 0 - - - - 99 +3 1218 1386 1562 342 174 -2.46 0 - - 0 - - 99 -2 1624 1621 1463 159 156 -5.58 0 - - - - 0 99 +3 1632 1641 1787 153 144 -1.52 0 - - 0 - - 99 +2 1754 1784 1957 201 171 -6.83 0 - 0 - - - 99 +2 1958 1970 2113 153 141 -3.78 0 - 0 - - - 99 0004 -3 2327 2270 426 1899 1842 8.98 99 - - - - - 99 0005 +3 2211 2283 2417 204 132 3.64 99 - - 99 - - - -1 2877 2637 2479 396 156 -2.81 0 99 - - 0 - - -3 2903 2903 2778 123 123 0.94 0 99 - - - - 0 -3 3077 3077 2940 135 135 2.40 0 99 - 0 - - 0 -3 3209 3206 3078 129 126 -1.39 0 99 - - 0 - 0 0006 +1 2323 2359 3294 969 933 11.07 99 99 - - - - - 0007 -2 3346 3298 3167 177 129 -1.64 99 - - - - 99 - 0008 -3 3431 3413 3210 219 201 -0.43 99 - - - - - 99 0009 +3 3225 3363 3518 291 153 -0.46 99 - - 99 - - - 0010 +2 3422 3440 3607 183 165 -1.76 99 - 99 - - - - 0011 -1 3690 3621 3466 222 153 1.36 99 - - - 99 - - 0012 -2 3763 3751 3602 159 147 1.94 99 - - - - 99 - 0013 -3 3770 3770 3618 150 150 0.68 99 - - - - - 99 0014 +1 3646 3709 3840 192 129 2.95 62 62 - 0 37 - - -1 3852 3831 3691 159 138 0.46 1 98 - 0 1 - - 0015 +3 3663 3687 3884 219 195 -0.78 99 - - 99 - - - 0016 +2 3731 3731 4012 279 279 0.55 99 - 99 - - - - 0017 -3 4118 4037 3903 213 132 -1.13 99 - - - - - 99 0018 +1 3988 4000 4137 147 135 -0.76 99 99 - - - - - 0019 +2 4013 4256 4402 387 144 5.63 99 - 99 - - - - +3 4422 4449 4595 171 144 -12.48 0 99 - 0 - - - -1 4701 4647 4516 183 129 -4.12 0 99 - - 0 - - -3 4853 4808 4671 180 135 -2.64 0 99 - - - - 0 -3 5057 4979 4854 201 123 -0.90 0 99 - 0 0 - 0 -1 5193 5187 4822 369 363 -1.41 0 99 - - 0 - - -2 5317 5266 5069 246 195 -8.82 0 99 - 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- - 0 - -3 9548 9518 9375 171 141 -0.17 0 99 - - - - 0 -1 9735 9735 9580 153 153 -0.82 0 99 - - 0 - - +2 9617 9638 9763 144 123 3.77 0 99 0 - - - - 0025 +1 8476 8560 9927 1449 1365 9.34 99 99 - - - - - 0026 +3 9894 9897 10046 150 147 1.61 99 - - 99 - - - -3 10424 10352 10230 192 120 -2.26 0 99 - - - - 0 +2 10628 10628 10792 162 162 1.91 0 99 0 - - - - -3 10832 10772 10647 183 123 -1.79 0 99 0 - - - 0 -3 11183 11132 10872 309 258 -2.21 0 99 - - - - 0 0027 +1 9982 9994 11454 1470 1458 6.72 99 99 - - - - - 0028 -1 11556 11523 11365 189 156 2.43 99 - - - 99 - - +2 11612 11702 11872 258 168 -0.75 0 - 0 - 99 - - +1 11716 11815 11949 231 132 -6.73 0 0 - - 99 0 - +1 12226 12301 12441 213 138 -4.32 0 0 - - 99 - - +3 12366 12426 12572 204 144 -2.44 0 - 0 0 99 - - +2 12398 12452 12595 195 141 -0.37 0 0 0 - 99 - - +1 12442 12457 12672 228 213 -0.52 0 0 - - 99 - - -3 12695 12686 12561 132 123 -5.52 0 - - - 99 0 0 +2 12728 12728 12907 177 177 3.03 0 0 0 - 99 - - +1 12673 12799 12936 261 135 -8.88 0 0 - 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0 - - 99 - -3 15902 15887 15708 192 177 -1.94 0 0 - - - 99 0 +1 15652 15808 15930 276 120 -5.77 0 0 0 - - 99 - +2 15737 15827 16228 489 399 -0.98 0 - 0 - - 99 - 0034 -2 16231 16177 15356 873 819 6.25 99 - - - - 99 - 0035 -3 16604 16565 16413 189 150 5.92 99 - - - - - 99 -1 16692 16629 16507 183 120 -2.88 0 - - 99 0 - - 0036 +3 16479 16509 16811 330 300 5.54 99 - - 99 - - - -3 16928 16850 16671 255 177 2.42 2 97 - - - - 2 -1 17028 16893 16693 333 198 2.78 3 96 - - 3 - 0 0037 +1 16669 16744 17040 369 294 5.93 99 99 - - - - - +3 17250 17292 17417 165 123 -0.81 0 0 - 0 99 - - +1 17290 17341 17484 192 141 -2.40 0 0 - - 99 - - +3 17727 17769 17891 162 120 -4.29 0 0 - 0 99 - - +1 17617 18031 18258 639 225 -0.45 0 0 - - 99 - - +3 18138 18186 18329 189 141 -3.91 0 - - 0 99 - - +2 18275 18281 18409 132 126 0.65 0 0 0 - 99 - - +1 18262 18436 18696 432 258 -1.17 0 0 - - 99 - - -3 18758 18737 18570 186 165 0.01 0 - - - 99 - 0 -3 19022 18974 18759 261 213 -0.07 0 - - - 99 - 0 +3 19032 19071 19202 168 129 -4.87 0 - - 0 99 - - +1 19117 19135 19281 162 144 -3.35 0 0 - - 99 - - -3 19379 19298 19158 219 138 -6.97 0 - - - 99 - 0 0038 -1 19470 19407 17125 2343 2280 9.06 99 - - - 99 - - +3 19422 19527 19652 228 123 2.77 0 - - 0 - - 99 +1 19540 19546 19725 183 177 -0.51 0 0 - - - - 99 +2 19670 19682 19834 162 150 -4.06 0 - 0 - - - 99 +3 19704 19791 19949 243 156 -1.57 0 - - 0 - - 99 -2 20002 19957 19826 174 129 -5.79 0 - - - - 0 99 -2 20137 20128 20003 132 123 -0.50 0 - 0 - - 0 99 0039 -3 20168 20123 19449 717 672 8.51 99 - - - - - 99 +2 19871 20234 20563 690 327 2.02 0 - 0 - - 99 - +2 20618 20648 20977 357 327 2.51 0 - 0 - - 99 - 0040 -2 21004 20980 20138 864 840 11.38 99 - - - - 99 -